IVF0024936 (gene) Melon (IVF77) v1

Overview
NameIVF0024936
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr04: 8006472 .. 8009074 (+)
RNA-Seq ExpressionIVF0024936
SyntenyIVF0024936
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAAAAAGAAAAGTAATAATATTTATAATATAATAATAATATATTATACTTATTATTATTATTATTATTAAACCCTCGTCAAATTGTGTGCCCTCATCTCTTCCTCATTCTTCCTCTTCACTGTGCCTTAGCATCGGTGCAGTCTCATCACCGCCATTGTCCGACGTCTGCGCATCGCCATCTCGGACAGAGCCGGTCCTCACTGTCCGTCACTCTTTGTCATCTATCGAAGCCAAAGCTTGTCGTCTCTAGTCGTTCATTGTTGACCTGAGCTGAATGACGTAGCATCTTGTCGCCTCGCGCCTGCATCATCTTTTTCATTGCAAGCTTCCCATCGTTGAGGTTTGTGGTAAGGGTGAAATTTGTGGATTTGTGGTTGTTTCCGTAGCCATTGTTTAAGTACTGATGTTGTAGTAACTGGTAGCTTTATTTATAGGGCAGTGTACTGTTGCAAGCACGGTGTCCCAAGAGATCCTACATGTGATCCCACATGTTGTGCATCCTTTGATATGTATATCCTTTAGGATTACTAGACTGATTGATGTGTATCTTATAGGATCTCAAAGACTATTATGATGTAGGAAGCTATTCATTTTTTTCCTTAGTGGGTCTATTTTATATTCATCTTTGTTATGTTCAACTTTTTTAGGTAAAGGTAATACGAGAGACAAATCGGCAGGGGCAAGAAGGGGTTGTGATCTCGATATGGGAACATTTTTTAAAACACTTTCGCCTATAGTTTTAATGTCTTATGTTTTATTGTTTTCTTGCTTTGAGTTCTATTAATTGGAATAACTATTGTCTCTGGTGACTCATACAAGAACGTCATCGTTAAAGATGGTTTAGAACCAAAAGATTATATTAGAGCGAAACTTCAAGGGGCTAAGAATGAGTTTAAGTTTTTTAATTAGCTTGTAGCTACAGTACTTGTGAAGATTTTCATTTCATTTTAGATTATTAAGTGTTTGCTTTTTTAGATATTGAGATCACTCTTGATAGGGTTTTCATTAATAAGGGGCTGGGGATGAGTTTAAGCTTCTCAATTAGATTAGAGCTGTACTGCTTGTTAAGGTTTCCATCATCAGAGATTAAGTGTGTGGTTTTCTAGTTATTGAGATTAAAGTTAGACGGGGTTATGATTTGATTCCCATTTTGGAATCTTTTTTTTTCTTCTGCCATTATTTGATGGGGATGATCTTGATCCAGTGCAGCAATTGTTATTTCTGCATTCACTGTTTCTTTGTTGATTGTGATATGTACATCTGTATATTAATATCAAACTATCTTTGTATGCTTTGATGGGTAGGTTTATTACAAAGGCTATTTCTAGATTATCTGGTTCATTGACGAACAATGGAAGATAAAGTCACTGTCCCACCTAAAAGAGATTGGAAACAAATGGGACATGAAGAGGCAACTGTAGCTGTTCATGAAGAAATGAAACGAGTGCAAAAGTTTCCTTCTAACAGTACCTATGCTACTCATCGTTTGCGGGTTTTAAACAAAATTCTGCAGCTTTTATCAATTCAGGTTTGTATCATGAAACAGAAGCAATCATTTGGTCGGTTTGTGTTAATAATTAATGTAGTAGAAGTAGGGTAATGTGGGCTTTCTTGTTCAAATATTGAGATTAGGATTAGATTCCTTCTAAGAAGTACAAATACGACTGGGATACAACACAATGTTATTTTTTAAAAAAAAATATCTAGGACATAGATGACAAGACAAAGATCCATAAAATAAAATAAAAAAGATGAATGAAGCACAGCTTTTCATACTTTTATCATAAGTTTTCAGAGATGTAGAAGTTGACTGTATAATTGATTATGATTAACTTGCTGGAGACTATGCTAAGTTTATGTATCACCTATTCATCTTAAGTTTCTCTTCAATGAAGAAATGGATTGCTATTGATGATCCCATTGCTATGCAATTGTTATACGTTTACTCTCCGTTTTCCTATTTTCTTGTTTGTAATTGCAGAGCTTCAAATTCAATT

mRNA sequence

AAAAAAAAAAGAAAAGTAATAATATTTATAATATAATAATAATATATTATACTTATTATTATTATTATTATTAAACCCTCGTCAAATTGTGTGCCCTCATCTCTTCCTCATTCTTCCTCTTCACTGTGCCTTAGCATCGGTGCAGTCTCATCACCGCCATTGTCCGACGTCTGCGCATCGCCATCTCGGACAGAGCCGGTCCTCACTGTCCGTCACTCTTTGTCATCTATCGAAGCCAAAGCTTGTCGTCTCTAGTCGTTCATTGTTGACCTGAGCTGAATGACGTAGCATCTTGTCGCCTCGCGCCTGCATCATCTTTTTCATTGCAAGCTTCCCATCGTTGAGGTTTGTGGTTTATTACAAAGGCTATTTCTAGATTATCTGGTTCATTGACGAACAATGGAAGATAAAGTCACTGTCCCACCTAAAAGAGATTGGAAACAAATGGGACATGAAGAGGCAACTGTAGCTGTTCATGAAGAAATGAAACGAGTGCAAAAGTTTCCTTCTAACAGTACCTATGCTACTCATCGTTTGCGGGTTTTAAACAAAATTCTGCAGCTTTTATCAATTCAGGTTTGTATCATGAAACAGAAGCAATCATTTGGTCGGTTTGTGTTAATAATTAATGTAGTAGAAGTAGGGTAATGTGGGCTTTCTTGTTCAAATATTGAGATTAGGATTAGATTCCTTCTAAGAAGTACAAATACGACTGGGATACAACACAATGTTATTTTTTAAAAAAAAATATCTAGGACATAGATGACAAGACAAAGATCCATAAAATAAAATAAAAAAGATGAATGAAGCACAGCTTTTCATACTTTTATCATAAGTTTTCAGAGATGTAGAAGTTGACTGTATAATTGATTATGATTAACTTGCTGGAGACTATGCTAAGTTTATGTATCACCTATTCATCTTAAGTTTCTCTTCAATGAAGAAATGGATTGCTATTGATGATCCCATTGCTATGCAATTGTTATACGTTTACTCTCCGTTTTCCTATTTTCTTGTTTGTAATTGCAGAGCTTCAAATTCAATT

Coding sequence (CDS)

ATGGAAGATAAAGTCACTGTCCCACCTAAAAGAGATTGGAAACAAATGGGACATGAAGAGGCAACTGTAGCTGTTCATGAAGAAATGAAACGAGTGCAAAAGTTTCCTTCTAACAGTACCTATGCTACTCATCGTTTGCGGGTTTTAAACAAAATTCTGCAGCTTTTATCAATTCAGGTTTGTATCATGAAACAGAAGCAATCATTTGGTCGGTTTGTGTTAATAATTAATGTAGTAGAAGTAGGGTAA

Protein sequence

MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQVCIMKQKQSFGRFVLIINVVEVG
Homology
[Close]
BLAST of IVF0024936 vs. ExPASy TrEMBL
Match: A0A5A7SZV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001550 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.4e-24
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQV 60
          MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 
Sbjct: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 CIMKQKQ 68
           + ++++
Sbjct: 61 TVSQEEE 67

[Close]
BLAST of IVF0024936 vs. ExPASy TrEMBL
Match: A0A0A0LFX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.6e-21
Identity = 54/67 (80.60%), Postives = 61/67 (91.04%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQV 60
          MEDKV VP KRDWKQMGHE ATVAVHEEMKRVQ+FPSNSTYATHRLR+LNKILQLLSIQ 
Sbjct: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60

Query: 61 CIMKQKQ 68
           + ++++
Sbjct: 61 TLSQEEE 67

[Close]
BLAST of IVF0024936 vs. ExPASy TrEMBL
Match: A0A6J1CCW1 (uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010342 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 60
          ME KV+ PPK +WKQMGHEE TV VH+EMKRVQ+ PSNS YATHR RVLNKILQLLSIQ
Sbjct: 1  MESKVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQ 59

[Close]
BLAST of IVF0024936 vs. ExPASy TrEMBL
Match: A0A6J1IHD5 (uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-15
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 60
          ME KV+V PK + KQMGH+EA V V EEMKRVQ+ PSNSTYATHRLRVLNKILQLLSIQ
Sbjct: 1  MEGKVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQ 59

[Close]
BLAST of IVF0024936 vs. ExPASy TrEMBL
Match: A0A6J1F6C2 (uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC111442587 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-15
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 60
          ME KV+V PK + KQMGH+EA V V EEMKRVQ+ PSNSTYATHRLRVLNKILQLLSIQ
Sbjct: 1  MEGKVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQ 59

[Close]
BLAST of IVF0024936 vs. NCBI nr
Match: KAA0036794.1 (uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95861.1 uncharacterized protein E5676_scaffold110G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (295), Expect = 1.10e-32
Identity = 59/67 (88.06%), Postives = 64/67 (95.52%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQV 60
          MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 
Sbjct: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 CIMKQKQ 67
           + ++++
Sbjct: 61 TVSQEEE 67

[Close]
BLAST of IVF0024936 vs. NCBI nr
Match: XP_004150100.1 (uncharacterized protein LOC101214758 [Cucumis sativus] >XP_004150101.1 uncharacterized protein LOC101214758 [Cucumis sativus] >KGN59879.1 hypothetical protein Csa_002033 [Cucumis sativus])

HSP 1 Score: 108 bits (269), Expect = 9.88e-29
Identity = 54/59 (91.53%), Postives = 56/59 (94.92%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 59
          MEDKV VP KRDWKQMGHE ATVAVHEEMKRVQ+FPSNSTYATHRLR+LNKILQLLSIQ
Sbjct: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQ 59

[Close]
BLAST of IVF0024936 vs. NCBI nr
Match: XP_038898294.1 (uncharacterized protein LOC120085994 [Benincasa hispida] >XP_038898295.1 uncharacterized protein LOC120085994 [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 2.60e-24
Identity = 50/67 (74.63%), Postives = 57/67 (85.07%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQV 60
          ME K TV PKR WKQM H+EAT AVHEEMKRVQ+ PSNSTYATHRLRVLNKILQLLSIQ 
Sbjct: 1  MEGKFTVSPKRGWKQMEHKEATGAVHEEMKRVQRLPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 CIMKQKQ 67
           + ++++
Sbjct: 61 TVSQEEE 67

[Close]
BLAST of IVF0024936 vs. NCBI nr
Match: XP_022139403.1 (uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncharacterized protein LOC111010342 [Momordica charantia])

HSP 1 Score: 97.1 bits (240), Expect = 2.60e-24
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 59
          ME KV+ PPK +WKQMGHEE TV VH+EMKRVQ+ PSNS YATHR RVLNKILQLLSIQ
Sbjct: 1  MESKVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQ 59

[Close]
BLAST of IVF0024936 vs. NCBI nr
Match: KAG7024864.1 (hypothetical protein SDJN02_13683 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 1.01e-21
Identity = 47/59 (79.66%), Postives = 51/59 (86.44%), Query Frame = 0 

Query: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQ 59
          ME KV+V PK D KQMGH+EA V V EEMKRVQ+ PSNSTYATHR+RVLNKILQLLSIQ
Sbjct: 1  MESKVSVLPKNDGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRMRVLNKILQLLSIQ 59

[Close]
BLAST of IVF0024936 vs. TAIR 10
Match: AT3G13677.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 3.7e-09
Identity = 28/55 (50.91%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 13 WKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQVCIMKQKQ 68
          W +M  +E +  + EE+KRV K PSNS YA HRL+VLNKI  LLS+Q  + ++K+
Sbjct: 12 WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQRTLSQEKE 66

[Close]
BLAST of IVF0024936 vs. TAIR 10
Match: AT3G13677.1 (unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.4e-08
Identity = 27/53 (50.94%), Postives = 37/53 (69.81%), Query Frame = 0 

Query: 13 WKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQVCIMKQ 66
          W +M  +E +  + EE+KRV K PSNS YA HRL+VLNKI  LLS+Q  + ++
Sbjct: 12 WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQNIVSRE 64

The following BLAST results are available for this feature:
BLAST of IVF0024936 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024936 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SZV05.4e-2488.06Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LFX05.6e-2180.60Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1[more]
A0A6J1CCW12.2e-1779.66uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010... [more]
A0A6J1IHD53.5e-1579.66uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958... [more]
A0A6J1F6C23.5e-1579.66uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC1114425... [more]
BLAST of IVF0024936 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036794.11.10e-3288.06uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95... [more]
XP_004150100.19.88e-2991.53uncharacterized protein LOC101214758 [Cucumis sativus] >XP_004150101.1 uncharact... [more]
XP_038898294.12.60e-2474.63uncharacterized protein LOC120085994 [Benincasa hispida] >XP_038898295.1 unchara... [more]
XP_022139403.12.60e-2479.66uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncha... [more]
KAG7024864.11.01e-2179.66hypothetical protein SDJN02_13683 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of IVF0024936 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G13677.23.7e-0950.91unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G13677.11.4e-0850.94unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bac... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024936.3IVF0024936.3mRNA