IVF0024910 (gene) Melon (IVF77) v1

Overview
NameIVF0024910
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description40S ribosomal protein S20
Locationtig00000656: 117713 .. 119293 (+)
RNA-Seq ExpressionIVF0024910
SyntenyIVF0024910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTCACTCTCGTTCTCCTTCTTTCAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGGTTTCTCTATTTTTCTTATCTCCATTGCTTATTGTTTCTTGTATTTTGGAATTGTTTCCTGTGGTTGAGTTCTTTTTGTCAATATTGAAACCACTGTTTGGTTGGTTCAACAGATTCATTTTGGAAACAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGGTATTCACTTTTACATGCTGGATTATTGTTGTTTTTTTTTTCTTCTTCTTTTGTAATTTAGTGAATATGGGACGCAAATGAGACTGCGTTTTCGTTTGTTTAGTTTGTTAACTTTCATGTCAAGTGAGTAGAGGATGATTGGTTGGTAATTTTCTTGCAATGCTCTGATTATGAATTGAATACGATATAATATTGTAAACACGTGAACAAATTATTGAGAGATAGTATTGTTGGATAAAATGGATGAATGATCCTTACGCGAGTTTAGGGGTTGTTAAATTACTTCTTAAGATTGTAGTTTGTTTTTCTGGATGTTGGTGCATTGTTAATCCTCACTCTATTGATTTCTACTGCATAGTTGGCTTATCATGTAATTGGGTTTAGGGTTTTTCAAAGTTGTCCAATTTACGGCCCTTCTGTCAATTAGTTTGTTTGATGTCATTTTTAATCAATAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTATTTTGTTTTCCACTTATCTATGATCTTCTGAGTTTAAGTTCATCTTTTCGTGGATTTGAAACTAATATATGTAATATCCCTTCATCGCGGTCCATTGCCATTTGGGAACTCATTTCTTGTGACGTCATTTCAATATTTGCTATCAAATTTGGAAAGAGGGGTGGATTCTTTTGGTTTTTATAGATATGAGTCCGATGTTCAAAAATCATCTAAGGCCAATTCTTAGTGAAATCATTTCTTTGTTCGGTTTTTGATTGTAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGAGTGCACTCTTTTTCATGTTTCGACTATTTTTAGTTTCATTAGACAGCTGTTACTTTTTTGGGTTTGGAACATACCTGTCAGGTCATTGGGGTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAATTAAAGACATTGATAGAGTTTTCAATTCCTGGCAAATTTTTCTTGCTTTAGAACTAATGTTAATTTTTCTATCTATGCAGATTTTGTATCTATAGCTGTGTGAATTCTTTCTTAATTCAGATTTAAATGTGCAATGCTTCAATAATCCATATCAC

mRNA sequence

CGTCACTCTCGTTCTCCTTCTTTCAGAGGCAGCTGGATACGCAATTGTTGAGATCTCCTTCGCACCCGCCGTCCCAGATTCATTTTGGAAACAGGAAGTATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGAGTGCACTCTTTTTCATGTTTCGACTATTTTTAGTTTCATTAGACAGCTGTTACTTTTTTGGGTTTGGAACATACCTGTCAGGTCATTGGGGTTTAAATGCAATAGTTGTTCCCATTATATGTTGAAATTAAAGACATTGATAGAGTTTTCAATTCCTGGCAAATTTTTCTTGCTTTAGAACTAATGTTAATTTTTCTATCTATGCAGATTTTGTATCTATAGCTGTGTGAATTCTTTCTTAATTCAGATTTAAATGTGCAATGCTTCAATAATCCATATCAC

Coding sequence (CDS)

ATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGACACACAAGAGCAAATCCATAAGATCAGGATTACACTCTCCTCCAAAAATGTCAAGAACCTCGAGAAAGTCTGCGCCGATTTGGTTCGTGGTGCGAAGGACAAGAGGTTGAGGGTGAAGGGACCAGTGAGAATGCCCACTAAAGTTCTCCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTTGAACTTCGTGTTCACAAGCGGGTTATTGACCTTTTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATTGAACCTGGGGTGGAGGTTGAGGTCACCATCGCCGATCAATGA

Protein sequence

MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ
Homology
[Close]
BLAST of IVF0024910 vs. ExPASy Swiss-Prot
Match: Q9STY6 (40S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 7.7e-56
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of IVF0024910 vs. ExPASy Swiss-Prot
Match: P49200 (40S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2)

HSP 1 Score: 214.5 bits (545), Expect = 6.5e-55
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of IVF0024910 vs. ExPASy Swiss-Prot
Match: P35686 (40S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 9.7e-51
Identity = 103/123 (83.74%), Postives = 111/123 (90.24%), Query Frame = 0 

Query: 1   MAYA-AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRM 60
           +AYA  MK  K G E +QE  H+IRITLSSK+VKNLEKVC DLV+GAKDK L+VKGPVRM
Sbjct: 6   VAYAPPMKSGKIGFESSQEVQHRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGPVRM 65

Query: 61  PTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTI 120
           PTKVLHITTRKSPCGEGTNTWDRFE+RVHKRVIDL SSADVVKQITSITIEPGVEVEVTI
Sbjct: 66  PTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTI 125

Query: 121 ADQ 123
           +DQ
Sbjct: 126 SDQ 128

[Close]
BLAST of IVF0024910 vs. ExPASy Swiss-Prot
Match: P23403 (40S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 6.3e-42
Identity = 80/107 (74.77%), Postives = 98/107 (91.59%), Query Frame = 0 

Query: 15  DTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCG 74
           D +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L ITTRK+PCG
Sbjct: 12  DQEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCG 71

Query: 75  EGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
           EG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 72  EGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of IVF0024910 vs. ExPASy Swiss-Prot
Match: Q3ZBH8 (40S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 8.2e-42
Identity = 82/117 (70.09%), Postives = 101/117 (86.32%), Query Frame = 0 

Query: 5   AMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVL 64
           A K T     + +  IH+IRITL+S+NVK+LEKVCADL+RGAK+K L+VKGPVRMPTK L
Sbjct: 2   AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTL 61

Query: 65  HITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 122
            ITTRK+PCGEG+ TWDRF++R+HKR+IDL S +++VKQITSI+IEPGVEVEVTIAD
Sbjct: 62  RITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118

[Close]
BLAST of IVF0024910 vs. ExPASy TrEMBL
Match: A0A5A7VKH9 (40S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold577G00570 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. ExPASy TrEMBL
Match: A0A6J1IAH1 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. ExPASy TrEMBL
Match: A0A6J1FSX5 (40S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. ExPASy TrEMBL
Match: A0A1S3AXJ9 (40S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-61
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. ExPASy TrEMBL
Match: A0A6J1J8F7 (40S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=3 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.3e-60
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 123
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. NCBI nr
Match: XP_008439109.1 (PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S ribosomal protein S20-2-like [Cucurbita moschata] >XP_022973095.1 40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023516475.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >XP_038878364.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878373.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878380.1 40S ribosomal protein S20-2-like [Benincasa hispida] >XP_038878389.1 40S ribosomal protein S20-2-like [Benincasa hispida] >KAA0067687.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa] >KAG7030825.1 40S ribosomal protein S20-2 [Cucurbita argyrosperma subsp. argyrosperma] >TYK23691.1 40S ribosomal protein S20-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 239 bits (611), Expect = 1.41e-79
Identity = 122/122 (100.00%), Postives = 122/122 (100.00%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. NCBI nr
Match: XP_022985516.1 (40S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosomal protein S20-2-like [Cucurbita pepo subsp. pepo] >KAG7014816.1 40S ribosomal protein S20-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 236 bits (603), Expect = 2.34e-78
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTK GLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKAGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. NCBI nr
Match: XP_024198508.1 (40S ribosomal protein S20-2 [Rosa chinensis] >PRQ59871.1 putative ribosomal protein S10 [Rosa chinensis])

HSP 1 Score: 236 bits (602), Expect = 3.32e-78
Identity = 120/122 (98.36%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLE+TQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEETQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. NCBI nr
Match: XP_008467267.1 (PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_038906766.1 40S ribosomal protein S20-2 [Benincasa hispida] >XP_038906767.1 40S ribosomal protein S20-2 [Benincasa hispida] >KAA0055131.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa] >TYK20728.1 40S ribosomal protein S20-2 [Cucumis melo var. makuwa])

HSP 1 Score: 236 bits (601), Expect = 4.56e-78
Identity = 120/121 (99.17%), Postives = 120/121 (99.17%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLED QEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDAQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

[Close]
BLAST of IVF0024910 vs. NCBI nr
Match: XP_004148131.3 (40S ribosomal protein S20-2 [Cucumis sativus] >XP_031739457.1 40S ribosomal protein S20-2 [Cucumis sativus] >KAE8650433.1 hypothetical protein Csa_010260 [Cucumis sativus])

HSP 1 Score: 235 bits (600), Expect = 6.70e-78
Identity = 121/122 (99.18%), Postives = 121/122 (99.18%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLLITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120

Query: 121 DQ 122
           DQ
Sbjct: 121 DQ 122

[Close]
BLAST of IVF0024910 vs. TAIR 10
Match: AT3G47370.2 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.6 bits (553), Expect = 5.4e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of IVF0024910 vs. TAIR 10
Match: AT3G47370.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.6 bits (553), Expect = 5.4e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of IVF0024910 vs. TAIR 10
Match: AT3G47370.3 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 217.6 bits (553), Expect = 5.4e-57
Identity = 111/121 (91.74%), Postives = 112/121 (92.56%), Query Frame = 0 

Query: 1   MAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
           MAY  MKPTK GLE   EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMP
Sbjct: 1   MAYEPMKPTKAGLEAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMP 60

Query: 61  TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIA 120
           TKVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIA
Sbjct: 61  TKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120

Query: 121 D 122
           D
Sbjct: 121 D 121

[Close]
BLAST of IVF0024910 vs. TAIR 10
Match: AT3G45030.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

[Close]
BLAST of IVF0024910 vs. TAIR 10
Match: AT5G62300.1 (Ribosomal protein S10p/S20e family protein )

HSP 1 Score: 214.5 bits (545), Expect = 4.6e-56
Identity = 109/120 (90.83%), Postives = 111/120 (92.50%), Query Frame = 0 

Query: 2   AYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPT 61
           AY  MKP K GLE+  EQIHKIRITLSSKNVKNLEKVC DLVRGAKDKRLRVKGPVRMPT
Sbjct: 4   AYQPMKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPT 63

Query: 62  KVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIAD 121
           KVL ITTRK+PCGEGTNTWDRFELRVHKRVIDLFSS DVVKQITSITIEPGVEVEVTIAD
Sbjct: 64  KVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 123

The following BLAST results are available for this feature:
BLAST of IVF0024910 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9STY67.7e-5691.7440S ribosomal protein S20-2 OS=Arabidopsis thaliana OX=3702 GN=RPS20B PE=2 SV=1[more]
P492006.5e-5590.8340S ribosomal protein S20-1 OS=Arabidopsis thaliana OX=3702 GN=RPS20A PE=2 SV=2[more]
P356869.7e-5183.7440S ribosomal protein S20 OS=Oryza sativa subsp. japonica OX=39947 GN=RPS20 PE=2... [more]
P234036.3e-4274.7740S ribosomal protein S20 OS=Xenopus laevis OX=8355 GN=rps20 PE=1 SV=1[more]
Q3ZBH88.2e-4270.0940S ribosomal protein S20 OS=Bos taurus OX=9913 GN=RPS20 PE=3 SV=1[more]
BLAST of IVF0024910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VKH96.3e-61100.0040S ribosomal protein S20-2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A6J1IAH16.3e-61100.0040S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111471601 PE=... [more]
A0A6J1FSX56.3e-61100.0040S ribosomal protein S20-2-like OS=Cucurbita moschata OX=3662 GN=LOC111447005 P... [more]
A0A1S3AXJ96.3e-61100.0040S ribosomal protein S20-2-like OS=Cucumis melo OX=3656 GN=LOC103483999 PE=3 SV... [more]
A0A6J1J8F75.3e-6099.1840S ribosomal protein S20-2-like OS=Cucurbita maxima OX=3661 GN=LOC111483503 PE=... [more]
BLAST of IVF0024910 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439109.11.41e-79100.00PREDICTED: 40S ribosomal protein S20-2-like [Cucumis melo] >XP_022941728.1 40S r... [more]
XP_022985516.12.34e-7899.1840S ribosomal protein S20-2-like [Cucurbita maxima] >XP_023551840.1 40S ribosoma... [more]
XP_024198508.13.32e-7898.3640S ribosomal protein S20-2 [Rosa chinensis] >PRQ59871.1 putative ribosomal prot... [more]
XP_008467267.14.56e-7899.17PREDICTED: 40S ribosomal protein S20-2 [Cucumis melo] >XP_016903425.1 PREDICTED:... [more]
XP_004148131.36.70e-7899.1840S ribosomal protein S20-2 [Cucumis sativus] >XP_031739457.1 40S ribosomal prot... [more]
BLAST of IVF0024910 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G47370.25.4e-5791.74Ribosomal protein S10p/S20e family protein [more]
AT3G47370.15.4e-5791.74Ribosomal protein S10p/S20e family protein [more]
AT3G47370.35.4e-5791.74Ribosomal protein S10p/S20e family protein [more]
AT3G45030.14.6e-5690.83Ribosomal protein S10p/S20e family protein [more]
AT5G62300.14.6e-5690.83Ribosomal protein S10p/S20e family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 79..93
score: 52.69
coord: 22..35
score: 44.51
coord: 57..72
score: 42.43
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..121
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 20..119
score: 18.389648
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 24..118
e-value: 2.0E-38
score: 143.7
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 24..118
e-value: 6.5E-28
score: 96.9
IPR036838Ribosomal protein S10 domain superfamilyGENE3D3.30.70.600Ribosomal protein S10 domaincoord: 7..121
e-value: 5.6E-49
score: 167.0
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILY54999Ribosomal protein S10coord: 22..119
IPR005729Ribosomal protein S10, eukaryotic/archaealTIGRFAMTIGR01046TIGR01046coord: 21..119
e-value: 1.7E-40
score: 135.4
NoneNo IPR availablePANTHERPTHR11700:SF27RIBOSOMAL PROTEIN S10-RELATEDcoord: 1..121
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 46..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024910.2IVF0024910.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome