IVF0024894 (gene) Melon (IVF77) v1

Overview


Name	IVF0024894
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 28065099 .. 28065362 (+)
RNA-Seq Expression	IVF0024894
Synteny	IVF0024894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGCTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGA

mRNA sequence

ATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGCTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGA

Coding sequence (CDS)

ATGGCCTCTCCCTCCAAACTCTTCCTCTGCTTCTGTTTTTTCATTTTCTTGATAATTAGCAGTAGCCTTGCTGCTGTGCAGCGGCCCAATGGCGGCGGTGGTGGAGGAGGTGGAGGAGGGTCTGGTAGCGCATCGAGTAGCGGCGGAGGTTCAGCTTCTGGGTCTGGGTCTGGGTCCGGATCCGGTAGTGGCGGTGGGTCCGGTTTCAATGGAGTTTCTGCTGATCAGGCCAGTGGGTTGAACCACAGGAAGGTTTCTCCTTGA

Protein sequence

MASPSKLFLCFCFFIFLIISSSLAAVQRPNGGGGGGGGGGSGSASSSGGGSASGSGSGSGSGSGGGSGFNGVSADQASGLNHRKVSP

Homology

[Close]

BLAST of IVF0024894 vs. ExPASy TrEMBL
Match: A0A0A0LBI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 8.9e-17
Identity = 70/88 (79.55%), Postives = 73/88 (82.95%), Query Frame = 0


Query: 1  MASPSKLFLCFCFFIFLIISSSLAAVQRPN-GGGGGGGGGGSGSASSSGGGSASGSGSGS 60
          MAS SKLFLCFCFFIFLI SS+LAAVQRPN GGGGGGGGGGSGS SSSG GSASGSGSGS
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGSGS 60

Query: 61 GSGSGGGSGFNGVSADQASGLNHRKVSP 88
          GSG G G    G+S+DQA G  HRK SP
Sbjct: 61 GSGGGSGDSV-GISSDQAGGSTHRKASP 87

[Close]

BLAST of IVF0024894 vs. NCBI nr
Match: KGN59380.1 (hypothetical protein Csa_000800 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 6.91e-23
Identity = 72/89 (80.90%), Postives = 76/89 (85.39%), Query Frame = 0


Query: 1  MASPSKLFLCFCFFIFLIISSSLAAVQRPNGGGGGGGGGG-SGSASSSGGGSASGSGSGS 60
          MAS SKLFLCFCFFIFLI SS+LAAVQRPNGGGGGGGGGG SGS SSSG GSASGSGS  
Sbjct: 1  MASSSKLFLCFCFFIFLISSSALAAVQRPNGGGGGGGGGGGSGSGSSSGSGSASGSGS-- 60

Query: 61 GSGSGGGSGFN-GVSADQASGLNHRKVSP 87
          GSGSGGGSG + G+S+DQA G  HRK SP
Sbjct: 61 GSGSGGGSGDSVGISSDQAGGSTHRKASP 87

The following BLAST results are available for this feature:

BLAST of IVF0024894 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBI4	8.9e-17	79.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G815440 PE=4 SV=1	[more]

BLAST of IVF0024894 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59380.1	6.91e-23	80.90	hypothetical protein Csa_000800 [Cucumis sativus]	[more]

BLAST of IVF0024894 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024894.1	IVF0024894.1	mRNA