IVF0024794 (gene) Melon (IVF77) v1

Overview


Name	IVF0024794
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	U4/U6 small nuclear ribonucleoprotein Prp3
Location	chr12: 14814813 .. 14815055 (-)
RNA-Seq Expression	IVF0024794
Synteny	IVF0024794

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCGGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACTAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGTAG

mRNA sequence

ATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCGGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACTAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGTAG

Coding sequence (CDS)

ATGGTGGAACCTACCGATATACCATCAGCAAGTGTGCCCCGGAATTTGTTACATCCTAGTCATTCCCTTCCTATCAAGGTATCTTCAATTTCTACCACAAATGAAAATAAGGGAGTTAGTATTACTAGATCTCATGAGGTTCATGGAAAATCTAGTACAGATGGGACATCCTCAACTGCTGGGAAAAGTGGAAATCTCTCTCTTGATGCTTTAGCAAAAGCTAAGAAAGCTTTACAGATGTAG

Protein sequence

MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTAGKSGNLSLDALAKAKKALQM

Homology

[Close]

BLAST of IVF0024794 vs. ExPASy Swiss-Prot
Match: Q9C7E7 (Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 3.0e-08
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 19  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAK 78
           PS +L  KVSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AK
Sbjct: 175 PSQTLLTKVSSISTTDENK-ASVVRSHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAK 234

Query: 79  AKKALQM 81
           A+KALQ+
Sbjct: 235 ARKALQL 240

[Close]

BLAST of IVF0024794 vs. ExPASy TrEMBL
Match: A0A5A7TKU4 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00080 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 2.4e-32
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
          MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 5  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 64

Query: 61 GKSGNLSLDALAKAKKALQM 81
          GKSGNLSLDALAKAKKALQ+
Sbjct: 65 GKSGNLSLDALAKAKKALQI 84

[Close]

BLAST of IVF0024794 vs. ExPASy TrEMBL
Match: A0A5D3D4Z0 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001020 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
          MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 5  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 64

Query: 61 GKSGNLSLDALAKAKKALQM 81
          GKSGNLSLDAL KAKKALQM
Sbjct: 65 GKSGNLSLDALTKAKKALQM 84

[Close]

BLAST of IVF0024794 vs. ExPASy TrEMBL
Match: A0A5D3CTY3 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1779G00330 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 70  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 129

Query: 61  GKSGNLSLDALAKAKKALQM 81
           GKSGNLSLDAL KAKKALQM
Sbjct: 130 GKSGNLSLDALTKAKKALQM 149

[Close]

BLAST of IVF0024794 vs. ExPASy TrEMBL
Match: A0A5A7ULG7 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001890 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 56  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 115

Query: 61  GKSGNLSLDALAKAKKALQM 81
           GKSGNLSLDAL KAKKALQM
Sbjct: 116 GKSGNLSLDALTKAKKALQM 135

[Close]

BLAST of IVF0024794 vs. ExPASy TrEMBL
Match: A0A5D3CZW3 (U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00240 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 6.9e-32
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 81  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 140

Query: 61  GKSGNLSLDALAKAKKALQM 81
           GKSGNLSLDAL KAKKALQM
Sbjct: 141 GKSGNLSLDALTKAKKALQM 160

[Close]

BLAST of IVF0024794 vs. NCBI nr
Match: KAA0033141.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa] >TYK18580.1 U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 3.16e-42
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
          MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 5  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 64

Query: 61 GKSGNLSLDALAKAKKALQM 80
          GKSGNLSLDAL KAKKALQM
Sbjct: 65 GKSGNLSLDALTKAKKALQM 84

[Close]

BLAST of IVF0024794 vs. NCBI nr
Match: TYK14912.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 2.25e-41
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 70  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 129

Query: 61  GKSGNLSLDALAKAKKALQM 80
           GKSGNLSLDAL KAKKALQM
Sbjct: 130 GKSGNLSLDALTKAKKALQM 149

[Close]

BLAST of IVF0024794 vs. NCBI nr
Match: TYK17092.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 3.10e-41
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 81  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 140

Query: 61  GKSGNLSLDALAKAKKALQM 80
           GKSGNLSLDAL KAKKALQM
Sbjct: 141 GKSGNLSLDALTKAKKALQM 160

[Close]

BLAST of IVF0024794 vs. NCBI nr
Match: TYK23452.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (361), Expect = 5.33e-41
Identity = 78/80 (97.50%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1   MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 100 MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 159

Query: 61  GKSGNLSLDALAKAKKALQM 80
           GKSGNLSLDAL KAKKALQM
Sbjct: 160 GKSGNLSLDALTKAKKALQM 179

[Close]

BLAST of IVF0024794 vs. NCBI nr
Match: KAA0047405.1 (U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa])

HSP 1 Score: 143 bits (360), Expect = 5.69e-41
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1   MVEPTDIPSASVPRNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 60
           MVEPTDIPSASVP+NLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA
Sbjct: 64  MVEPTDIPSASVPQNLLHPSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTSSTA 123

Query: 61  GKSGNLSLDALAKAKKALQ 79
           GKSGNLSLDALAKAKKALQ
Sbjct: 124 GKSGNLSLDALAKAKKALQ 142

[Close]

BLAST of IVF0024794 vs. TAIR 10
Match: AT1G28060.1 (Pre-mRNA-splicing factor 3 )

HSP 1 Score: 58.9 bits (141), Expect = 2.1e-09
Identity = 44/67 (65.67%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 19  PSHSLPIKVSSISTTNENKGVSITRSHEVHGKSSTDGTS-STAGK-SGNLSLDA---LAK 78
           PS +L  KVSSISTT+ENK  S+ RSHEV GKSSTDG   STAGK S NL LD+    AK
Sbjct: 175 PSQTLLTKVSSISTTDENK-ASVVRSHEVPGKSSTDGRPLSTAGKSSANLPLDSSALAAK 234

Query: 79  AKKALQM 81
           A+KALQ+
Sbjct: 235 ARKALQL 240

The following BLAST results are available for this feature:

BLAST of IVF0024794 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C7E7	3.0e-08	65.67	Protein RDM16 OS=Arabidopsis thaliana OX=3702 GN=RDM16 PE=2 SV=1	[more]

BLAST of IVF0024794 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TKU4	2.4e-32	98.75	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3D4Z0	6.9e-32	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CTY3	6.9e-32	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5A7ULG7	6.9e-32	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A5D3CZW3	6.9e-32	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of IVF0024794 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033141.1	3.16e-42	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa] >TYK18580....	[more]
TYK14912.1	2.25e-41	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
TYK17092.1	3.10e-41	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
TYK23452.1	5.33e-41	97.50	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]
KAA0047405.1	5.69e-41	98.73	U4/U6 small nuclear ribonucleoprotein Prp3 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0024794 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G28060.1	2.1e-09	65.67	Pre-mRNA-splicing factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024794.1	IVF0024794.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0046540	U4/U6 x U5 tri-snRNP complex
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity