IVF0024789 (gene) Melon (IVF77) v1

Overview


Name	IVF0024789
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Histone H2A
Location	chr01: 28129489 .. 28130297 (+)
RNA-Seq Expression	IVF0024789
Synteny	IVF0024789

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAAAATTGCTACTCTCTCCATAACGACCAACGGATCCCTTCCCAATCTCAACCGGAAAGCAGAGATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCCGCTGAGGTTTGTAATTTCTAACTTCACTTTTAGTTCAATTCTCTCAGTTTACAGCGTTCTGATTTAGGTCTTTTGTTTTTGTTTTAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAGGTTATAGTAGAAATGGCCATTGATGAATAGAAAATCAAATAGTTATTTAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGGGTTCATTCTTCTTTTGGTTTGTAAATTTTGCGAAACGAGTTTCACTTAGATTTGTATCTGTTATCATCGCCGTCGTTCAAATTTTATGTTATTCAATGTAAATGCTGATGAAGTTCAACATTAATGAAATCGTATGTATTTATTT

mRNA sequence

AAACAAAAATTGCTACTCTCTCCATAACGACCAACGGATCCCTTCCCAATCTCAACCGGAAAGCAGAGATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCCGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAGGTTATAGTAGAAATGGCCATTGATGAATAGAAAATCAAATAGTTATTTAGGTTATGTTAGATTTTGTCATTAACTTCAATGAATGGGTTCATTCTTCTTTTGGTTTGTAAATTTTGCGAAACGAGTTTCACTTAGATTTGTATCTGTTATCATCGCCGTCGTTCAAATTTTATGTTATTCAATGTAAATGCTGATGAAGTTCAACATTAATGAAATCGTATGTATTTATTT

Coding sequence (CDS)

ATGAGTTCTACTGAAGTTTCCACCAAGGGCGGCAGAGGCAGGAAAGCTTCCACCAAGTCTGTCTCCAGGTCTCACAAGGCTGGTCTCCAGTTCCCTGTCGGCCGTATCGCCAGGTACCTCAAGAAAGGCCGTTATGCACAGCGTGTCGGCTCAGGCTCCCCGGTCTACCTCTCCGCCGTCCTTGAATACCTTGCCGCTGAGGTTTTGGAGTTGGCGGGGAATGCTGCGAGGGACAACAAGAAGAACAGAATCATTCCAAGACATATCCAGCTTGCGGTGAGGAATGATGAGGAATTGAGCAAGCTTTTGGGATCGGTTACGATTGCAAGCGGAGGAGTGATGCCGAAGATTCATCAATCTCTTTTGCCGAAGAAGGCCGGGAATGCGAAAGACAAAGCTGAAATCGGATCGGCCTCTCAGGAATTCTAG

Protein sequence

MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDKAEIGSASQEF

Homology

[Close]

BLAST of IVF0024789 vs. ExPASy Swiss-Prot
Match: O65759 (Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.9e-56
Identity = 116/142 (81.69%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST  +TKGGRG+  ++KSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAV
Sbjct: 1   MSST-ATTKGGRGKPKASKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNK NRI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+
Sbjct: 61  LEYLAAEVLELAGNAARDNKNNRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQT 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK G  K K EIGSASQEF
Sbjct: 121 LLPKKVG--KGKGEIGSASQEF 139

[Close]

BLAST of IVF0024789 vs. ExPASy Swiss-Prot
Match: P35063 (Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 8.9e-56
Identity = 116/142 (81.69%), Postives = 129/142 (90.85%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS+    KGGRG+  STKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AV
Sbjct: 1   MSSS--GAKGGRGKAKSTKSVSRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRI+PRHIQLAVRNDEELSKLLG+VTIA+GGV+P IHQ 
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQV 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKK+G  KDK EIGSASQEF
Sbjct: 121 LLPKKSG--KDKGEIGSASQEF 138

[Close]

BLAST of IVF0024789 vs. ExPASy Swiss-Prot
Match: A2ZL69 (Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 10  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]

BLAST of IVF0024789 vs. ExPASy Swiss-Prot
Match: Q2QPG9 (Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.5e-55
Identity = 111/133 (83.46%), Postives = 124/133 (93.23%), Query Frame = 0


Query: 10  GGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVL 69
           GGRG+   +KSVSRS KAGLQFPVGRIARYLK G+YA+RVG+G+PVYLSAVLEYLAAEVL
Sbjct: 8   GGRGKSKGSKSVSRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVL 67

Query: 70  ELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNA 129
           ELAGNAARDNKKNRI+PRHIQLAVRNDEELS+LLG+VTIA+GGV+P IHQ+LLPKK G  
Sbjct: 68  ELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG-- 127

Query: 130 KDKAEIGSASQEF 143
           KDKA+IGSASQEF
Sbjct: 128 KDKADIGSASQEF 138

[Close]

BLAST of IVF0024789 vs. ExPASy Swiss-Prot
Match: O04848 (Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 5.8e-55
Identity = 111/136 (81.62%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. ExPASy TrEMBL
Match: A0A1S3BRH7 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. ExPASy TrEMBL
Match: A0A0A0K525 (Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.8e-68
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. ExPASy TrEMBL
Match: A0A6J1GNM4 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 2.2e-65
Identity = 135/142 (95.07%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS +V TKGGRG+K+  KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 11  MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 71  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of IVF0024789 vs. ExPASy TrEMBL
Match: A0A6J1L0A1 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 7.8e-63
Identity = 129/142 (90.85%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST+V  K GRG+K++TKSV+RSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKAGRGKKSATKSVTRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. ExPASy TrEMBL
Match: A0A6J1HB52 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.7e-62
Identity = 128/142 (90.14%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST+V  KGGRG+K++ KSV+RSHKAGLQFPVGRIARYLKKGR+AQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPAKGGRGKKSAAKSVTRSHKAGLQFPVGRIARYLKKGRFAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIASGGV+PKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIASGGVLPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 143
           LLPKKAG+ KDKAEIGSASQEF
Sbjct: 121 LLPKKAGSTKDKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. NCBI nr
Match: XP_008451416.1 (PREDICTED: histone H2AX-like [Cucumis melo])

HSP 1 Score: 271 bits (694), Expect = 1.37e-91
Identity = 142/142 (100.00%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 142
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. NCBI nr
Match: XP_004148882.1 (histone H2AX [Cucumis sativus] >KGN44845.1 hypothetical protein Csa_016006 [Cucumis sativus])

HSP 1 Score: 270 bits (691), Expect = 3.92e-91
Identity = 141/142 (99.30%), Postives = 142/142 (100.00%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSSTEVSTKGGRG+KASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTEVSTKGGRGKKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 142
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. NCBI nr
Match: XP_038896926.1 (histone H2AX-like [Benincasa hispida])

HSP 1 Score: 266 bits (679), Expect = 2.65e-89
Identity = 137/142 (96.48%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST++  KGGRGRKASTKSVSRSHKAGLQFPVGR+ARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDIPAKGGRGRKASTKSVSRSHKAGLQFPVGRVARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 142
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 121 LLPKKAGNAKDKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. NCBI nr
Match: KAG6575875.1 (Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 261 bits (667), Expect = 1.79e-87
Identity = 135/142 (95.07%), Postives = 140/142 (98.59%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSST+V TKGGRG+K++ KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 1   MSSTDVPTKGGRGKKSAAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120

Query: 121 LLPKKAGNAKDKAEIGSASQEF 142
           LLPKKAGNAK+KAEIGSASQEF
Sbjct: 121 LLPKKAGNAKNKAEIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. NCBI nr
Match: XP_022953582.1 (histone H2AX-like [Cucurbita moschata])

HSP 1 Score: 261 bits (666), Expect = 3.57e-87
Identity = 135/142 (95.07%), Postives = 138/142 (97.18%), Query Frame = 0


Query: 1   MSSTEVSTKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 60
           MSS +V TKGGRG+K+  KSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV
Sbjct: 11  MSSNDVPTKGGRGKKSDAKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAV 70

Query: 61  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 120
           LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS
Sbjct: 71  LEYLAAEVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQS 130

Query: 121 LLPKKAGNAKDKAEIGSASQEF 142
           LLPKKAGNAKDKAEIGSASQEF
Sbjct: 131 LLPKKAGNAKDKAEIGSASQEF 152

[Close]

BLAST of IVF0024789 vs. TAIR 10
Match: AT1G08880.1 (Histone superfamily protein )

HSP 1 Score: 214.9 bits (546), Expect = 4.1e-56
Identity = 111/136 (81.62%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKSGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. TAIR 10
Match: AT1G54690.1 (gamma histone variant H2AX )

HSP 1 Score: 214.5 bits (545), Expect = 5.4e-56
Identity = 111/136 (81.62%), Postives = 125/136 (91.91%), Query Frame = 0


Query: 7   STKGGRGRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 66
           +TKGGRG+  +TKSVSRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYLSAVLEYLAA
Sbjct: 9   TTKGGRGKPKATKSVSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLSAVLEYLAA 68

Query: 67  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 126
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLGSVTIA+GGV+P IHQ+LLP K 
Sbjct: 69  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKV 128

Query: 127 GNAKDKAEIGSASQEF 143
           G  K+K +IGSASQEF
Sbjct: 129 G--KNKGDIGSASQEF 142

[Close]

BLAST of IVF0024789 vs. TAIR 10
Match: AT4G27230.1 (histone H2A 2 )

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-48
Identity = 99/128 (77.34%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 11  GRGRK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRG++    A+ KS SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNAKDKAE 135
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of IVF0024789 vs. TAIR 10
Match: AT4G27230.2 (histone H2A 2 )

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-48
Identity = 99/128 (77.34%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 11  GRGRK----ASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAA 70
           GRG++    A+ KS SRS KAGLQFPVGRIAR+LK G+YA+RVG+G+PVYL+AVLEYLAA
Sbjct: 3   GRGKQLGSGAAKKSTSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAA 62

Query: 71  EVLELAGNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKA 130
           EVLELAGNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKKA
Sbjct: 63  EVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKA 122

Query: 131 GNAKDKAE 135
           G++K   E
Sbjct: 123 GSSKPTEE 130

[Close]

BLAST of IVF0024789 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 188.0 bits (476), Expect = 5.4e-48
Identity = 95/122 (77.87%), Postives = 108/122 (88.52%), Query Frame = 0


Query: 13  GRKASTKSVSRSHKAGLQFPVGRIARYLKKGRYAQRVGSGSPVYLSAVLEYLAAEVLELA 72
           G  ++ K+ +RS KAGLQFPVGRIAR+LKKG+YA+RVG+G+PVYL+AVLEYLAAEVLELA
Sbjct: 9   GSGSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELA 68

Query: 73  GNAARDNKKNRIIPRHIQLAVRNDEELSKLLGSVTIASGGVMPKIHQSLLPKKAGNAKDK 132
           GNAARDNKK RI+PRHIQLAVRNDEELSKLLG VTIA+GGVMP IH  LLPKK G +K  
Sbjct: 69  GNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKTGASKPS 128

Query: 133 AE 135
           AE
Sbjct: 129 AE 130

The following BLAST results are available for this feature:

BLAST of IVF0024789 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65759	8.9e-56	81.69	Histone H2AX OS=Cicer arietinum OX=3827 GN=HIS2A PE=2 SV=1	[more]
P35063	8.9e-56	81.69	Histone H2AX OS=Picea abies OX=3329 PE=2 SV=1	[more]
A2ZL69	1.5e-55	83.46	Probable histone H2AXb OS=Oryza sativa subsp. indica OX=39946 GN=OsI_037312 PE=3...	[more]
Q2QPG9	1.5e-55	83.46	Probable histone H2AXb OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0530000 ...	[more]
O04848	5.8e-55	81.62	Probable histone H2AXa OS=Arabidopsis thaliana OX=3702 GN=At1g08880 PE=1 SV=1	[more]

BLAST of IVF0024789 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BRH7	1.2e-68	100.00	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103492716 PE=3 SV=1	[more]
A0A0A0K525	2.8e-68	99.30	Histone H2A OS=Cucumis sativus OX=3659 GN=Csa_7G390240 PE=3 SV=1	[more]
A0A6J1GNM4	2.2e-65	95.07	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111456076 PE=3 SV=1	[more]
A0A6J1L0A1	7.8e-63	90.85	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111497905 PE=3 SV=1	[more]
A0A6J1HB52	1.7e-62	90.14	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111461202 PE=3 SV=1	[more]

BLAST of IVF0024789 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451416.1	1.37e-91	100.00	PREDICTED: histone H2AX-like [Cucumis melo]	[more]
XP_004148882.1	3.92e-91	99.30	histone H2AX [Cucumis sativus] >KGN44845.1 hypothetical protein Csa_016006 [Cucu...	[more]
XP_038896926.1	2.65e-89	96.48	histone H2AX-like [Benincasa hispida]	[more]
KAG6575875.1	1.79e-87	95.07	Histone H2AX, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022953582.1	3.57e-87	95.07	histone H2AX-like [Cucurbita moschata]	[more]

BLAST of IVF0024789 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08880.1	4.1e-56	81.62	Histone superfamily protein	[more]
AT1G54690.1	5.4e-56	81.62	gamma histone variant H2AX	[more]
AT4G27230.1	1.4e-48	77.34	histone H2A 2	[more]
AT4G27230.2	1.4e-48	77.34	histone H2A 2	[more]
AT1G51060.1	5.4e-48	77.87	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 77..91 score: 78.03 coord: 63..76 score: 89.46 coord: 48..63 score: 75.0 coord: 19..41 score: 69.65 coord: 105..123 score: 63.11
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 8..128 e-value: 1.2E-76 score: 270.7
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 13..125 e-value: 1.49848E-68 score: 200.639
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..134 e-value: 4.2E-64 score: 216.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 22..125
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 3..94 e-value: 7.3E-16 score: 58.7
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 97..130 e-value: 7.8E-18 score: 63.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	PANTHER	PTHR23430:SF207	HISTONE H2A	coord: 6..140
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 6..140
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 27..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024789.1	IVF0024789.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity