IVF0024695 (gene) Melon (IVF77) v1

Overview


Name	IVF0024695
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr04: 31202363 .. 31203333 (+)
RNA-Seq Expression	IVF0024695
Synteny	IVF0024695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGAGCTGTCTAATGATAAGAAACCAATTCCACAGCCTTCCTTTCCCCTTCATTTTTCCGCCATGGACACCACCGCCTCCTCCATGAATCGATCGCCGCCGCCGTACCCAACCCCACATCGCACCGTCGATTTCTCTCCGATTGAGTTCATTCTCGGCCTCGTCGCCGTCATCACAATCCCTGCCCTAGCCTACTCCTTCATCTTCGCCATCAAGTGCCCCCCCAATTTCCTCCGTCTCTGGCGGCAAAGATCCACCAGGCTCTCCGCCGCCGGCGTCACCATGGTGGTCGGAAATCGTACTCCTTCCAGTGACGTGGCTGCTGCCGTTAAATACAACAAAGACGAGCACTGTAAGGAAGTAGGCACCGAGTGTCCAGTGTGCCTGTCGGCGTTCGACGATGGTGAAGAGATCCGGCAACTCACCACCTGTAAACACTCTTTTCACGTCGATTGTATCGATATGTGGCTCTACTCTCACCCTAATTGTCCTGTTTGTCGAGCCGCCGTCCCCGTCACTGTTAAGCGGCCGATTAACAACCACGCGCCGCGGCGGCCTGCGGCTTCTAGAAGCGACGATTTCCACCAAGGACTGCCGGATGCCGGATATTTAGTTTGAAATTCTTCTTCTTCTTCCATCTCTTTGTCGTTCTTGATCCGTTTTATGCAAATTCGAACCACAGATCGAAAATATACGTTCAAATTTCATCTCCATTTGGCTAAATTTTGTGGATAATTTGGAATTAGATAGTTTTCATTTCATAGAATTTAGAAAAACTGGAGTGATTTTTAATTGTGAAATTGAAAGCGCAAAATTGTAATAGAAATCAGGATTGGGTTATGAGAAATTGATTTAAGAAATTTCCTTCCCTTTTATTTCTTTTTGTTACACGTGTCGTCATTTGATTCCATTGTCTGACGAACAATCTGGATTTAATTAATCGTAAATGTGAATATATATTTTCAATCTTA

mRNA sequence

CCTGAGCTGTCTAATGATAAGAAACCAATTCCACAGCCTTCCTTTCCCCTTCATTTTTCCGCCATGGACACCACCGCCTCCTCCATGAATCGATCGCCGCCGCCGTACCCAACCCCACATCGCACCGTCGATTTCTCTCCGATTGAGTTCATTCTCGGCCTCGTCGCCGTCATCACAATCCCTGCCCTAGCCTACTCCTTCATCTTCGCCATCAAGTGCCCCCCCAATTTCCTCCGTCTCTGGCGGCAAAGATCCACCAGGCTCTCCGCCGCCGGCGTCACCATGGTGGTCGGAAATCGTACTCCTTCCAGTGACGTGGCTGCTGCCGTTAAATACAACAAAGACGAGCACTGTAAGGAAGTAGGCACCGAGTGTCCAGTGTGCCTGTCGGCGTTCGACGATGGTGAAGAGATCCGGCAACTCACCACCTGTAAACACTCTTTTCACGTCGATTGTATCGATATGTGGCTCTACTCTCACCCTAATTGTCCTGTTTGTCGAGCCGCCGTCCCCGTCACTGTTAAGCGGCCGATTAACAACCACGCGCCGCGGCGGCCTGCGGCTTCTAGAAGCGACGATTTCCACCAAGGACTGCCGGATGCCGGATATTTAGTTTGAAATTCTTCTTCTTCTTCCATCTCTTTGTCGTTCTTGATCCGTTTTATGCAAATTCGAACCACAGATCGAAAATATACGTTCAAATTTCATCTCCATTTGGCTAAATTTTGTGGATAATTTGGAATTAGATAGTTTTCATTTCATAGAATTTAGAAAAACTGGAGTGATTTTTAATTGTGAAATTGAAAGCGCAAAATTGTAATAGAAATCAGGATTGGGTTATGAGAAATTGATTTAAGAAATTTCCTTCCCTTTTATTTCTTTTTGTTACACGTGTCGTCATTTGATTCCATTGTCTGACGAACAATCTGGATTTAATTAATCGTAAATGTGAATATATATTTTCAATCTTA

Coding sequence (CDS)

ATGGACACCACCGCCTCCTCCATGAATCGATCGCCGCCGCCGTACCCAACCCCACATCGCACCGTCGATTTCTCTCCGATTGAGTTCATTCTCGGCCTCGTCGCCGTCATCACAATCCCTGCCCTAGCCTACTCCTTCATCTTCGCCATCAAGTGCCCCCCCAATTTCCTCCGTCTCTGGCGGCAAAGATCCACCAGGCTCTCCGCCGCCGGCGTCACCATGGTGGTCGGAAATCGTACTCCTTCCAGTGACGTGGCTGCTGCCGTTAAATACAACAAAGACGAGCACTGTAAGGAAGTAGGCACCGAGTGTCCAGTGTGCCTGTCGGCGTTCGACGATGGTGAAGAGATCCGGCAACTCACCACCTGTAAACACTCTTTTCACGTCGATTGTATCGATATGTGGCTCTACTCTCACCCTAATTGTCCTGTTTGTCGAGCCGCCGTCCCCGTCACTGTTAAGCGGCCGATTAACAACCACGCGCCGCGGCGGCCTGCGGCTTCTAGAAGCGACGATTTCCACCAAGGACTGCCGGATGCCGGATATTTAGTTTGA

Protein sequence

MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLWRQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDAGYLV

Homology

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BLAST of IVF0024695 vs. ExPASy Swiss-Prot
Match: O80927 (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 1.4e-32
Identity = 77/198 (38.89%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 12  PPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLWRQRSTRLSAAG 71
           PPP+P P R++D +P++ I  ++A + +PAL Y+  F   C           S R S++ 
Sbjct: 47  PPPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPC---------SSSRRNSSSS 106

Query: 72  VTMVVGNRTPSSDV------------AAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQ 131
            T    + TP + V             +  K++KD H KE+G EC VCL  F D +E+RQ
Sbjct: 107 RTSSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQ 166

Query: 132 LTTCKHSFHVDCIDMWLYSHPNCPVCRA-----------AVPVTVKRPINNHAPRR--PA 185
           L+ CKH+FHV CI+ WL  HPNCP+CR             VPV V   +N     R   A
Sbjct: 167 LSECKHAFHVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSA 226

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BLAST of IVF0024695 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-14
Identity = 58/195 (29.74%), Postives = 81/195 (41.54%), Query Frame = 0


Query: 12  PPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLWRQRSTRLSAAG 71
           PPP P P       P E  L L   I +      F+F +     FL L   +  R+SAA 
Sbjct: 27  PPPPPPP------PPRELSLLLPTSICVVGSIILFLFLV----FFLYLHITQQRRISAAS 86

Query: 72  VTMVVGNRTPSSDVAAAVKYNKDEHCKEV--------------------------GTECP 131
           VT    N+    D      ++   H  ++                          GTEC 
Sbjct: 87  VTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECS 146

Query: 132 VCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRP 181
           VCL+ F++ E +R L  C H+FH++CID WL SH NCP+CRA V +  + P         
Sbjct: 147 VCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQ 206

[Close]

BLAST of IVF0024695 vs. ExPASy Swiss-Prot
Match: Q8LFY8 (RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 102 TECPVCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAV 150
           T+CPVCL+ F++ E +R L  C H+FH+ CID WL SH NCP+CRA +
Sbjct: 175 TDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGI 222

[Close]

BLAST of IVF0024695 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.1e-13
Identity = 57/186 (30.65%), Postives = 78/186 (41.94%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFI--------FAIKC 60
           MD ++SS + SP   P     +    I  +  ++ V     LA+  +         A+  
Sbjct: 12  MDESSSSSSPSPVSAPAGQAAMTAGGIATVAAVLIVFAALTLAFVLLQCYCDERRRAVTT 71

Query: 61  PPNFLRLWRQRSTRLSAAGVTMVVGNR-----------TPSSDVAAAVKYNKDEHCKEVG 120
                R  R R  R S +G     G             T  S   AA    ++E   + G
Sbjct: 72  TSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSLPVTVYSRSTAAAAAKEEEEEDDDG 131

Query: 121 TECPVCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHA 168
            EC VCL+  +DGEE R L  C H FH +C+DMWL SH  CP+CR  V V    P+    
Sbjct: 132 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV-VVPPPPLPPVP 191

[Close]

BLAST of IVF0024695 vs. ExPASy Swiss-Prot
Match: P0C041 (Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 PE=3 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-12
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 101 GTECPVCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNH 160
           GT+C +CL  F++ E +R L  C H+FHV CID WL SH NCP+CRA + V   +   +H
Sbjct: 152 GTDCSICLGEFNEDESLRLLPKCNHTFHVVCIDRWLKSHSNCPLCRAKIIVPTTQQPEHH 211

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BLAST of IVF0024695 vs. ExPASy TrEMBL
Match: A0A5D3DN65 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001760 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 6.9e-104
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
           TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GYLV 185
           GYLV
Sbjct: 181 GYLV 184

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BLAST of IVF0024695 vs. ExPASy TrEMBL
Match: A0A1S3B6Q9 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 6.9e-104
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
           TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GYLV 185
           GYLV
Sbjct: 181 GYLV 184

[Close]

BLAST of IVF0024695 vs. ExPASy TrEMBL
Match: A0A0A0LA67 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 3.9e-99
Identity = 175/184 (95.11%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MD TASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPAL YSFIFAIKCPPNFLRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           RQRSTRLS AG T+VVGNRTPSSDVAAAVKYNKDEHCKEVG ECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
             CKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPI+NHAPRRPAASRSDDFHQGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GYLV 185
           GYLV
Sbjct: 181 GYLV 184

[Close]

BLAST of IVF0024695 vs. ExPASy TrEMBL
Match: A0A6J1F238 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690 PE=3 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 9.1e-80
Identity = 146/184 (79.35%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MDT+A+ MNRS PP+PTPHRT DFSPIEFILGL+AVI IPAL YSF FAIKCPP  LRLW
Sbjct: 4   MDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           R+RS RLS A VT+V GNR+  SDVA   KYNKDE  KEVG ECPVCLSAF DGEEIRQL
Sbjct: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
             CKHSFHVDCIDMW YSHPNCPVCRA + + VKRPINN APRRPAASRSDDFHQGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GYLV 185
           G LV
Sbjct: 184 GNLV 187

[Close]

BLAST of IVF0024695 vs. ExPASy TrEMBL
Match: A0A6J1J6T6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111481888 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.2e-77
Identity = 143/184 (77.72%), Postives = 152/184 (82.61%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MD++A+ MNRS PP+P  HRT DFSP EFILGLVAVI IPAL YSF FAIKCPP  LRLW
Sbjct: 4   MDSSAALMNRSTPPHPMTHRTNDFSPFEFILGLVAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           R+RS RLS A V +V GNR+  SDVAA  KYNKDE  KEVG ECPVCLSAF DGEEIRQL
Sbjct: 64  RRRSARLSGAPVAVVAGNRSSYSDVAATFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
             CKHSFHVDCIDMW YSHPNCPVCRA + + VKRPINN APRRPAASRSDDFHQGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIVIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GYLV 185
           G LV
Sbjct: 184 GNLV 187

[Close]

BLAST of IVF0024695 vs. NCBI nr
Match: XP_008442561.1 (PREDICTED: RING-H2 finger protein ATL33 [Cucumis melo] >KAA0044082.1 RING-H2 finger protein ATL33 [Cucumis melo var. makuwa] >TYK25055.1 RING-H2 finger protein ATL33 [Cucumis melo var. makuwa])

HSP 1 Score: 385 bits (988), Expect = 4.78e-135
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW
Sbjct: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
           TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA
Sbjct: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GYLV 184
           GYLV
Sbjct: 181 GYLV 184

[Close]

BLAST of IVF0024695 vs. NCBI nr
Match: XP_004137943.1 (RING-H2 finger protein ATL33 [Cucumis sativus])

HSP 1 Score: 369 bits (947), Expect = 8.56e-129
Identity = 175/184 (95.11%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MD TASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPAL YSFIFAIKCPPNFLRLW
Sbjct: 1   MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 60

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           RQRSTRLS AG T+VVGNRTPSSDVAAAVKYNKDEHCKEVG ECPVCLSAFDDGEEIRQL
Sbjct: 61  RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 120

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
             CKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPI+NHAPRRPAASRSDDFHQGLPDA
Sbjct: 121 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 180

Query: 181 GYLV 184
           GYLV
Sbjct: 181 GYLV 184

[Close]

BLAST of IVF0024695 vs. NCBI nr
Match: KAE8651013.1 (hypothetical protein Csa_001104 [Cucumis sativus])

HSP 1 Score: 369 bits (947), Expect = 3.66e-128
Identity = 175/184 (95.11%), Postives = 177/184 (96.20%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MD TASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPAL YSFIFAIKCPPNFLRLW
Sbjct: 42  MDATASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALVYSFIFAIKCPPNFLRLW 101

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           RQRSTRLS AG T+VVGNRTPSSDVAAAVKYNKDEHCKEVG ECPVCLSAFDDGEEIRQL
Sbjct: 102 RQRSTRLSGAGATVVVGNRTPSSDVAAAVKYNKDEHCKEVGNECPVCLSAFDDGEEIRQL 161

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
             CKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPI+NHAPRRPAASRSDDFHQGLPDA
Sbjct: 162 AVCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPIHNHAPRRPAASRSDDFHQGLPDA 221

Query: 181 GYLV 184
           GYLV
Sbjct: 222 GYLV 225

[Close]

BLAST of IVF0024695 vs. NCBI nr
Match: XP_038905078.1 (RING-H2 finger protein ATL33 [Benincasa hispida])

HSP 1 Score: 343 bits (879), Expect = 2.00e-118
Identity = 164/184 (89.13%), Postives = 166/184 (90.22%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MD +AS MNRSPPP PTPHRTVDFSPIEFILGLVAVITIPAL YSF FAIKCPPN LRLW
Sbjct: 1   MDKSASLMNRSPPPSPTPHRTVDFSPIEFILGLVAVITIPALVYSFFFAIKCPPNLLRLW 60

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           R RS RLS A VT+VV NRTPSSDVAAAVKYNKDEHCKEV  ECPVCLSAFDDGEEIRQL
Sbjct: 61  RHRSARLSGAAVTVVVRNRTPSSDVAAAVKYNKDEHCKEVSNECPVCLSAFDDGEEIRQL 120

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
             CKHSFHVDCIDMWLYSHPNCPVCRAAVPV VKRPINNHAPRRPA SRSDDF QGLPDA
Sbjct: 121 AACKHSFHVDCIDMWLYSHPNCPVCRAAVPVAVKRPINNHAPRRPAVSRSDDFQQGLPDA 180

Query: 181 GYLV 184
           GYLV
Sbjct: 181 GYLV 184

[Close]

BLAST of IVF0024695 vs. NCBI nr
Match: XP_022934546.1 (RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. sororia] >KAG7017306.1 RING-H2 finger protein ATL33, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 305 bits (780), Expect = 2.73e-103
Identity = 146/184 (79.35%), Postives = 155/184 (84.24%), Query Frame = 0


Query: 1   MDTTASSMNRSPPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLW 60
           MDT+A+ MNRS PP+PTPHRT DFSPIEFILGL+AVI IPAL YSF FAIKCPP  LRLW
Sbjct: 4   MDTSAALMNRSTPPHPTPHRTNDFSPIEFILGLIAVIAIPALVYSFFFAIKCPPGLLRLW 63

Query: 61  RQRSTRLSAAGVTMVVGNRTPSSDVAAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQL 120
           R+RS RLS A VT+V GNR+  SDVA   KYNKDE  KEVG ECPVCLSAF DGEEIRQL
Sbjct: 64  RRRSARLSGAPVTVVAGNRSSYSDVAVTFKYNKDEVGKEVGNECPVCLSAFVDGEEIRQL 123

Query: 121 TTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRPAASRSDDFHQGLPDA 180
             CKHSFHVDCIDMW YSHPNCPVCRA + + VKRPINN APRRPAASRSDDFHQGLPDA
Sbjct: 124 IACKHSFHVDCIDMWFYSHPNCPVCRAEIAIAVKRPINNRAPRRPAASRSDDFHQGLPDA 183

Query: 181 GYLV 184
           G LV
Sbjct: 184 GNLV 187

[Close]

BLAST of IVF0024695 vs. TAIR 10
Match: AT2G37580.1 (RING/U-box superfamily protein )

HSP 1 Score: 141.0 bits (354), Expect = 9.8e-34
Identity = 77/198 (38.89%), Postives = 104/198 (52.53%), Query Frame = 0


Query: 12  PPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLWRQRSTRLSAAG 71
           PPP+P P R++D +P++ I  ++A + +PAL Y+  F   C           S R S++ 
Sbjct: 47  PPPFPAPPRSIDLTPLKLIFVVIAFVAVPALVYALFFNGPC---------SSSRRNSSSS 106

Query: 72  VTMVVGNRTPSSDV------------AAAVKYNKDEHCKEVGTECPVCLSAFDDGEEIRQ 131
            T    + TP + V             +  K++KD H KE+G EC VCL  F D +E+RQ
Sbjct: 107 RTSSSSDDTPHATVDTPPITETTVTSESGGKFHKDTHSKEIGNECSVCLMVFTDSDELRQ 166

Query: 132 LTTCKHSFHVDCIDMWLYSHPNCPVCRA-----------AVPVTVKRPINNHAPRR--PA 185
           L+ CKH+FHV CI+ WL  HPNCP+CR             VPV V   +N     R   A
Sbjct: 167 LSECKHAFHVLCIETWLKDHPNCPICRTDVSVKQQTEAPNVPVNVNGNVNRSGGNRRVSA 226

[Close]

BLAST of IVF0024695 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.7e-15
Identity = 58/195 (29.74%), Postives = 81/195 (41.54%), Query Frame = 0


Query: 12  PPPYPTPHRTVDFSPIEFILGLVAVITIPALAYSFIFAIKCPPNFLRLWRQRSTRLSAAG 71
           PPP P P       P E  L L   I +      F+F +     FL L   +  R+SAA 
Sbjct: 27  PPPPPPP------PPRELSLLLPTSICVVGSIILFLFLV----FFLYLHITQQRRISAAS 86

Query: 72  VTMVVGNRTPSSDVAAAVKYNKDEHCKEV--------------------------GTECP 131
           VT    N+    D      ++   H  ++                          GTEC 
Sbjct: 87  VTPGDTNQQEDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIIDGTECS 146

Query: 132 VCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAVPVTVKRPINNHAPRRP 181
           VCL+ F++ E +R L  C H+FH++CID WL SH NCP+CRA V +  + P         
Sbjct: 147 VCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQ 206

[Close]

BLAST of IVF0024695 vs. TAIR 10
Match: AT4G33565.1 (RING/U-box superfamily protein )

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-14
Identity = 35/72 (48.61%), Postives = 49/72 (68.06%), Query Frame = 0


Query: 90  KYNKDEHCKEVGTECPVCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAV 149
           +Y+K +   E GT+C VCLS F++ E +R L  CKH+FH+ CID WL SH NCP+CRA +
Sbjct: 204 QYSKKDGVVE-GTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWLRSHTNCPLCRAPI 263

Query: 150 PVTVKRPINNHA 162
            V     I++H+
Sbjct: 264 -VEANTMIDDHS 273

[Close]

BLAST of IVF0024695 vs. TAIR 10
Match: AT1G72220.1 (RING/U-box superfamily protein )

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-14
Identity = 27/48 (56.25%), Postives = 36/48 (75.00%), Query Frame = 0


Query: 102 TECPVCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAV 150
           T+CPVCL+ F++ E +R L  C H+FH+ CID WL SH NCP+CRA +
Sbjct: 175 TDCPVCLNEFEEDESLRLLPKCNHAFHISCIDTWLSSHTNCPLCRAGI 222

[Close]

BLAST of IVF0024695 vs. TAIR 10
Match: AT4G15975.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.7 bits (182), Expect = 8.6e-14
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = 0


Query: 103 ECPVCLSAFDDGEEIRQLTTCKHSFHVDCIDMWLYSHPNCPVCRAAV 150
           EC VCLS F D E  R +  CKH+FHVDCIDMW +SH +CP+CR+ +
Sbjct: 75  ECSVCLSEFKDNESGRVMPNCKHTFHVDCIDMWFHSHSSCPLCRSLI 121

The following BLAST results are available for this feature:

BLAST of IVF0024695 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O80927	1.4e-32	38.89	RING-H2 finger protein ATL33 OS=Arabidopsis thaliana OX=3702 GN=ATL33 PE=2 SV=2	[more]
Q9LX93	3.8e-14	29.74	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q8LFY8	7.1e-13	56.25	RING-H2 finger protein ATL54 OS=Arabidopsis thaliana OX=3702 GN=ATL54 PE=2 SV=2	[more]
Q9LRB7	7.1e-13	30.65	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
P0C041	1.2e-12	48.33	Putative RING-H2 finger protein ATL53 OS=Arabidopsis thaliana OX=3702 GN=ATL53 P...	[more]

BLAST of IVF0024695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DN65	6.9e-104	100.00	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3B6Q9	6.9e-104	100.00	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103486397 PE=3 ...	[more]
A0A0A0LA67	3.9e-99	95.11	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_3G734330 PE...	[more]
A0A6J1F238	9.1e-80	79.35	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111441690...	[more]
A0A6J1J6T6	4.2e-77	77.72	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111481888 P...	[more]

BLAST of IVF0024695 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442561.1	4.78e-135	100.00	PREDICTED: RING-H2 finger protein ATL33 [Cucumis melo] >KAA0044082.1 RING-H2 fin...	[more]
XP_004137943.1	8.56e-129	95.11	RING-H2 finger protein ATL33 [Cucumis sativus]	[more]
KAE8651013.1	3.66e-128	95.11	hypothetical protein Csa_001104 [Cucumis sativus]	[more]
XP_038905078.1	2.00e-118	89.13	RING-H2 finger protein ATL33 [Benincasa hispida]	[more]
XP_022934546.1	2.73e-103	79.35	RING-H2 finger protein ATL33-like [Cucurbita moschata] >KAG6580552.1 RING-H2 fin...	[more]

BLAST of IVF0024695 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37580.1	9.8e-34	38.89	RING/U-box superfamily protein	[more]
AT5G10380.1	2.7e-15	29.74	RING/U-box superfamily protein	[more]
AT4G33565.1	1.3e-14	48.61	RING/U-box superfamily protein	[more]
AT1G72220.1	5.0e-14	56.25	RING/U-box superfamily protein	[more]
AT4G15975.1	8.6e-14	59.57	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 104..145 e-value: 1.2E-6 score: 38.1
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 103..146 e-value: 9.3E-14 score: 51.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 104..146 score: 12.474524
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 76..152 e-value: 3.5E-20 score: 73.5
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 8..184
None	No IPR available	PANTHER	PTHR45676:SF88	RING-H2 FINGER PROTEIN ATL33	coord: 8..184
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 103..146 e-value: 6.39196E-16 score: 66.1713
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 103..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024695.1	IVF0024695.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane