IVF0024657 (gene) Melon (IVF77) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTGTGAAGAATACTCCATCTATCAATATGGTAAGTAACAGGGGACCCTCTAACCATTCATCACAAGGTCAAGGTCAAGGTGAAGGTCGAGGAAATAATTCTCCTATGGAAATCATGGTAATAGTGGTGGACAATCTGGAGGGCAAGGCTGAGGCTGAGGATGATATCGTCCAACTTACCAAGTTTGTGGAAAAAACAAGGCACACTGCAGATGTTTACTACAATAGGTTCTACAAGGAGTTTGTTTCCAATAATGGAAATAATCCAAACAAAGGGACAAACAACAACAATTTTAAGAACCCACGACTTTTATGA ATGGCTGTGAAGAATACTCCATCTATCAATATGGTAAGTAACAGGGGACCCTCTAACCATTCATCACAAGGTCAAGGTCAAGGTGAAGGTCGAGGAAATAATTCTCCTATGGAAATCATGGTAATAGTGGTGGACAATCTGGAGGGCAAGGCTGAGGCTGAGGATGATATCGTCCAACTTACCAAGTTTGTGGAAAAAACAAGGCACACTGCAGATGTTTACTACAATAGGTTCTACAAGGAGTTTGTTTCCAATAATGGAAATAATCCAAACAAAGGGACAAACAACAACAATTTTAAGAACCCACGACTTTTATGA ATGGCTGTGAAGAATACTCCATCTATCAATATGGTAAGTAACAGGGGACCCTCTAACCATTCATCACAAGGTCAAGGTCAAGGTGAAGGTCGAGGAAATAATTCTCCTATGGAAATCATGGTAATAGTGGTGGACAATCTGGAGGGCAAGGCTGAGGCTGAGGATGATATCGTCCAACTTACCAAGTTTGTGGAAAAAACAAGGCACACTGCAGATGTTTACTACAATAGGTTCTACAAGGAGTTTGTTTCCAATAATGGAAATAATCCAAACAAAGGGACAAACAACAACAATTTTAAGAACCCACGACTTTTATGA MAVKNTPSINMVSNRGPSNHSSQGQGQGEGRGNNSPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYNRFYKEFVSNNGNNPNKGTNNNNFKNPRLL Homology
BLAST of IVF0024657 vs. ExPASy TrEMBL
Match: A0A5D3D8B7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00340 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13 Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0
BLAST of IVF0024657 vs. ExPASy TrEMBL
Match: A0A5D3BWB6 (Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00030 PE=4 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08 Identity = 48/103 (46.60%), Postives = 55/103 (53.40%), Query Frame = 0
BLAST of IVF0024657 vs. NCBI nr
Match: TYK19804.1 (hypothetical protein E5676_scaffold307G00340 [Cucumis melo var. makuwa]) HSP 1 Score: 85.5 bits (210), Expect = 1.73e-18 Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0
BLAST of IVF0024657 vs. NCBI nr
Match: TYK02409.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa]) HSP 1 Score: 68.9 bits (167), Expect = 2.20e-11 Identity = 48/103 (46.60%), Postives = 55/103 (53.40%), Query Frame = 0
BLAST of IVF0024657 vs. NCBI nr
Match: TYJ99887.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 50.4 bits (119), Expect = 1.78e-04 Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 0
BLAST of IVF0024657 vs. NCBI nr
Match: KAA0051899.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]) HSP 1 Score: 50.4 bits (119), Expect = 1.78e-04 Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|