IVF0024657 (gene) Melon (IVF77) v1

Overview
NameIVF0024657
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr08: 14470800 .. 14471117 (-)
RNA-Seq ExpressionIVF0024657
SyntenyIVF0024657
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGAAGAATACTCCATCTATCAATATGGTAAGTAACAGGGGACCCTCTAACCATTCATCACAAGGTCAAGGTCAAGGTGAAGGTCGAGGAAATAATTCTCCTATGGAAATCATGGTAATAGTGGTGGACAATCTGGAGGGCAAGGCTGAGGCTGAGGATGATATCGTCCAACTTACCAAGTTTGTGGAAAAAACAAGGCACACTGCAGATGTTTACTACAATAGGTTCTACAAGGAGTTTGTTTCCAATAATGGAAATAATCCAAACAAAGGGACAAACAACAACAATTTTAAGAACCCACGACTTTTATGA

mRNA sequence

ATGGCTGTGAAGAATACTCCATCTATCAATATGGTAAGTAACAGGGGACCCTCTAACCATTCATCACAAGGTCAAGGTCAAGGTGAAGGTCGAGGAAATAATTCTCCTATGGAAATCATGGTAATAGTGGTGGACAATCTGGAGGGCAAGGCTGAGGCTGAGGATGATATCGTCCAACTTACCAAGTTTGTGGAAAAAACAAGGCACACTGCAGATGTTTACTACAATAGGTTCTACAAGGAGTTTGTTTCCAATAATGGAAATAATCCAAACAAAGGGACAAACAACAACAATTTTAAGAACCCACGACTTTTATGA

Coding sequence (CDS)

ATGGCTGTGAAGAATACTCCATCTATCAATATGGTAAGTAACAGGGGACCCTCTAACCATTCATCACAAGGTCAAGGTCAAGGTGAAGGTCGAGGAAATAATTCTCCTATGGAAATCATGGTAATAGTGGTGGACAATCTGGAGGGCAAGGCTGAGGCTGAGGATGATATCGTCCAACTTACCAAGTTTGTGGAAAAAACAAGGCACACTGCAGATGTTTACTACAATAGGTTCTACAAGGAGTTTGTTTCCAATAATGGAAATAATCCAAACAAAGGGACAAACAACAACAATTTTAAGAACCCACGACTTTTATGA

Protein sequence

MAVKNTPSINMVSNRGPSNHSSQGQGQGEGRGNNSPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYNRFYKEFVSNNGNNPNKGTNNNNFKNPRLL
Homology
BLAST of IVF0024657 vs. ExPASy TrEMBL
Match: A0A5D3D8B7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00340 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.5e-13
Identity = 44/52 (84.62%), Postives = 45/52 (86.54%), Query Frame = 0

Query: 35  SPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYNRFYKEFVSNN 87
           SPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYN      V+ N
Sbjct: 71  SPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYNSDATNHVTAN 122

BLAST of IVF0024657 vs. ExPASy TrEMBL
Match: A0A5D3BWB6 (Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1738G00030 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.4e-08
Identity = 48/103 (46.60%), Postives = 55/103 (53.40%), Query Frame = 0

Query: 5   NTPSINMVSNRGPSNHSS-----QGQGQGEG-RGNNSPMEIMVIVVDNLEGKAEAEDDIV 64
           NT ++NMVSNRGPSNHSS     +G     G RGNN             + K        
Sbjct: 144 NTRTVNMVSNRGPSNHSSRKVKVEGNNFSTGNRGNNGG-----------QSKVRGRGRYR 203

Query: 65  QLTKFVEKTRHTADVYYNRFYKEFVSNNGNNPNKGTNNNNFKN 102
              +   K  +  DV YNRF KEF  NNGNNPNKGTNNN+FKN
Sbjct: 204 PTCQVCGKIGYITDVCYNRFNKEFAPNNGNNPNKGTNNNSFKN 235

BLAST of IVF0024657 vs. NCBI nr
Match: TYK19804.1 (hypothetical protein E5676_scaffold307G00340 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.73e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = 0

Query: 35  SPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYN 76
           SPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYN
Sbjct: 71  SPMEIMVIVVDNLEGKAEAEDDIVQLTKFVEKTRHTADVYYN 112

BLAST of IVF0024657 vs. NCBI nr
Match: TYK02409.1 (putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 2.20e-11
Identity = 48/103 (46.60%), Postives = 55/103 (53.40%), Query Frame = 0

Query: 5   NTPSINMVSNRGPSNHSS-----QGQGQGEG-RGNNSPMEIMVIVVDNLEGKAEAEDDIV 64
           NT ++NMVSNRGPSNHSS     +G     G RGNN             + K        
Sbjct: 144 NTRTVNMVSNRGPSNHSSRKVKVEGNNFSTGNRGNNGG-----------QSKVRGRGRYR 203

Query: 65  QLTKFVEKTRHTADVYYNRFYKEFVSNNGNNPNKGTNNNNFKN 101
              +   K  +  DV YNRF KEF  NNGNNPNKGTNNN+FKN
Sbjct: 204 PTCQVCGKIGYITDVCYNRFNKEFAPNNGNNPNKGTNNNSFKN 235

BLAST of IVF0024657 vs. NCBI nr
Match: TYJ99887.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.78e-04
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 0

Query: 8   SINMVSNRGPSNHSSQGQGQGEGRGN--NSPMEIMVIVVDNLEGKAEAEDDIVQLTKFVE 67
           S+N VSNRG SNH+ QG       GN  N+  +          G+  +        +   
Sbjct: 31  SVNKVSNRGSSNHTPQGCRNNLSYGNCGNNGGQS--------RGRGRSRGPFCPTCEVCG 90

Query: 68  KTRHTADVYYNRFYKEFVSNNGNNPNKGTNNNNFKN 101
           K  HT D+ YNRF K+FV N+G N NKGT NN F+N
Sbjct: 91  KIGHTIDICYNRFNKKFVPNSGKNSNKGTTNN-FRN 117

BLAST of IVF0024657 vs. NCBI nr
Match: KAA0051899.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 50.4 bits (119), Expect = 1.78e-04
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 0

Query: 8   SINMVSNRGPSNHSSQGQGQGEGRGN--NSPMEIMVIVVDNLEGKAEAEDDIVQLTKFVE 67
           S+N VSNRG SNH+ QG       GN  N+  +          G+  +        +   
Sbjct: 31  SVNKVSNRGSSNHTPQGCRNNLSYGNCGNNGGQS--------RGRGRSRGPFCPTCEVCG 90

Query: 68  KTRHTADVYYNRFYKEFVSNNGNNPNKGTNNNNFKN 101
           K  HT D+ YNRF K+FV N+G N NKGT NN F+N
Sbjct: 91  KIGHTIDICYNRFNKKFVPNSGKNSNKGTTNN-FRN 117

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D8B72.5e-1384.62Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BWB62.4e-0846.60Putative Ty1-copia-like retrotransposon OS=Cucumis melo var. makuwa OX=1194695 G... [more]
Match NameE-valueIdentityDescription
TYK19804.11.73e-18100.00hypothetical protein E5676_scaffold307G00340 [Cucumis melo var. makuwa][more]
TYK02409.12.20e-1146.60putative Ty1-copia-like retrotransposon [Cucumis melo var. makuwa][more]
TYJ99887.11.78e-0439.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0051899.11.78e-0439.58Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..105
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024657.2IVF0024657.2mRNA