IVF0024620 (gene) Melon (IVF77) v1

Overview


Name	IVF0024620
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein transport protein SEC61 gamma subunit
Location	chr06: 14107432 .. 14108939 (-)
RNA-Seq Expression	IVF0024620
Synteny	IVF0024620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCTAAGGATAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGGTACAGTTTCCGAATCCCTTTTCATCCCTTTGTTTCCATAGTTCTTGTAACCAATTTCCTCTGTTTCGCGTGATTTGTGTAGAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTTTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGGTCGGGATTTTTGGTTTTTCACTGTTTTGTGATTGGGTTCTCGTTTGATTTGTTGTTTCGCGAGGTTGGGTTACTTCAATTTTAGAAATCTTTATTCATCTTATCAAAAGTAATCATTAGGTTTGATCTATGTCCAATTTCAGTGTTTGGTGTAATATGGATAATTTTTTTACATTGCTAGATGAATCTATATCTAGGGCATGTAGGTTATGAAGGGAGAAATGTTTTAACTGTCACAACAGTGTTTTAGCTATGATTCTATGAATTACTAAGTTGGTCATTGATGGCTTCATTATGTCCCTTTTCTACATACTCCTTGGCCTCCTTGTTTCCTAGAGGTTCTCTATGCCAATCATATTCCCTTTCAAACCAAATTTTCCTGAGAGTTCTCTTACCAATTCGTACTGTTTGCACCCTTCAATGAATAATGTAGAATATATTGAACTTTACGATTCAAGGACACAGTTGTACAATATATTGAACAAATCCGGTTCAAGCAAAGTCTGTAAGATATATTTAACTAAACTAATCTTCTCAAATTTTTACAATCACGAGGAGAAAACATATCTAATCTTCTAGCTCTATCAATACCAAACTTTAGAACAAAATTTGTTCTCCATACCACACCTTATAGATTACACATTGTTAGCTATATAGAAGAAGACTCGTGGTGAGTAGTTTGAATGAGGGAGCATTTGGAGTTCTGAGTTGGTTATTATAGTTTGTAGGAATAGTCAATGGATCTAATAATCTACCCCACTCACTTTAGGTTGGGGGCTTAAACACCCGCTAATTGATTGCTCAATTTACCCACTTATCTAGACTCTAAATCTTTGAACGTACAAAAGAGGGTGGAAACCAATTCTTGTTGGGTGAACTATTTTGCTGACCTTTGCATACGCATAATGATTGAATTACTTTATGTCCCATGATTGTGCATTGTTTTCATTCCCTAATAACATTTGCATGTAATAATTGATCGGTGTGATTGTTTGTTGAATTGAACCCTTTTGAGACATTATCTTGCTTTCAATTGCTTCTGCCCTTCAATGTTCATTCATTGCTGTTGAATCTGTTTTGCTGACAGCTGAGGCCACAAAAGGAGCAGGCCGGACAATATAGAAGGGAACTTGATCAACTATTTCAAATTCTTACCAATGTTTTTATTAATTTTAAAAGCTTAATTTATTTTCTAGAGAAGTACCAAACTCCATGA

mRNA sequence

ATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCTAAGGATAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGGTACAAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTTTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGGCCACAAAAGGAGCAGGCCGGACAATATAGAAGGGAACTTGATCAACTATTTCAAATTCTTACCAATGTTTTTATTAATTTTAAAAGCTTAATTTATTTTCTAGAGAAGTACCAAACTCCATGA

Coding sequence (CDS)

ATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCTAAGGATAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGGTACAAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTTTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGGCCACAAAAGGAGCAGGCCGGACAATATAGAAGGGAACTTGATCAACTATTTCAAATTCTTACCAATGTTTTTATTAATTTTAAAAGCTTAATTTATTTTCTAGAGAAGTACCAAACTCCATGA

Protein sequence

MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVFSSSSSLSPSITSSSDLARPQKEQAGQYRRELDQLFQILTNVFINFKSLIYFLEKYQTP

Homology

[Close]

BLAST of IVF0024620 vs. ExPASy Swiss-Prot
Match: P38385 (Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0178400 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-09
Identity = 29/31 (93.55%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDA+DSV DPLREFAKDSVRLVKRCHKPDRK
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRK 31

[Close]

BLAST of IVF0024620 vs. ExPASy Swiss-Prot
Match: P0DI74 (Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 GN=SEC61G1 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

[Close]

BLAST of IVF0024620 vs. ExPASy Swiss-Prot
Match: P0DI75 (Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 GN=SEC61G2 PE=1 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.2e-09
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

[Close]

BLAST of IVF0024620 vs. ExPASy Swiss-Prot
Match: Q9SMP2 (Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 GN=SEC61G3 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          M+AIDS  DPLR+FAK SVRLV+RCHKPDRK
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRK 31

[Close]

BLAST of IVF0024620 vs. ExPASy Swiss-Prot
Match: Q7Z1B8 (Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=213494 GN=SEC61G PE=3 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.1e-04
Identity = 20/31 (64.52%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MD +    +P R+FAKDS+RLVKRC KPDRK
Sbjct: 1  MDQVTKFIEPGRQFAKDSIRLVKRCTKPDRK 31

[Close]

BLAST of IVF0024620 vs. ExPASy TrEMBL
Match: A0A0A0LXS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097740 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 108/116 (93.10%), Postives = 109/116 (93.97%), Query Frame = 0


Query: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVFSSSSSL 60
           MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLV SSSSSL
Sbjct: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVSSSSSSL 60

Query: 61  SPSITSSSDLA---RPQKEQAGQYRR-ELDQLFQILTNVFINFKSLIYFLEKYQTP 113
           SPSITSSSDLA   RPQKEQAGQYRR ELDQLFQILTNV IN KSLIYFLEKY+TP
Sbjct: 61  SPSITSSSDLARQLRPQKEQAGQYRRMELDQLFQILTNVIINLKSLIYFLEKYKTP 116

[Close]

BLAST of IVF0024620 vs. ExPASy TrEMBL
Match: K3Y480 (Uncharacterized protein OS=Setaria italica OX=4555 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.6e-10
Identity = 55/109 (50.46%), Postives = 57/109 (52.29%), Query Frame = 0


Query: 1   MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTS---------SQRSRFV---------- 60
           MDAIDSV DPLR+FAKDSVRLVKRCHKPDRKGT          S  SRFV          
Sbjct: 1   MDAIDSVVDPLRDFAKDSVRLVKRCHKPDRKGTCQAPSIRRPVSNPSRFVFCLRQIWQWF 60

Query: 61  ------------------QRLASSSWDSLVFSSSSSLSPSITSSSDLAR 73
                             +R  SSSW S   SSSSS SPS  SSS  AR
Sbjct: 61  NPICVCMCAQSSPRWRRGRRSGSSSWASSASSSSSSSSPSTISSSVPAR 109

[Close]

BLAST of IVF0024620 vs. ExPASy TrEMBL
Match: A0A446T8U2 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Av1G172820 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.9e-09
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVFSSSSSL 60
          MDA+DSV DPLREFAKDSVRLVKRCHKPDRKG         QRLA +  D ++F     L
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGKD-------QRLAPARLDQVIF----PL 54

Query: 61 SPSIT 66
          SP +T
Sbjct: 61 SPDLT 54

[Close]

BLAST of IVF0024620 vs. ExPASy TrEMBL
Match: A0A446YW31 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G210650 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSS 36
          MDA+DSV DPLREFAKDSVRLVKRCHKPDRKG SS
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGKSS 35

[Close]

BLAST of IVF0024620 vs. ExPASy TrEMBL
Match: A0A5J5AIQ6 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_004808 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.5e-08
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKG 33
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKG
Sbjct: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKG 32

[Close]

BLAST of IVF0024620 vs. NCBI nr
Match: VAI19780.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 69.7 bits (169), Expect = 8.16e-13
Identity = 40/65 (61.54%), Postives = 45/65 (69.23%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVFSSSSSL 60
          MDA+DSV DPLREFAKDSVRLVKRCHKPDRKG         QRLA +  D ++F     L
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGKD-------QRLAPARLDQVIFP----L 54

Query: 61 SPSIT 65
          SP +T
Sbjct: 61 SPDLT 54

[Close]

BLAST of IVF0024620 vs. NCBI nr
Match: VAI92800.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 67.8 bits (164), Expect = 2.79e-12
Identity = 32/35 (91.43%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSS 35
          MDA+DSV DPLREFAKDSVRLVKRCHKPDRKG SS
Sbjct: 1  MDAVDSVVDPLREFAKDSVRLVKRCHKPDRKGKSS 35

[Close]

BLAST of IVF0024620 vs. NCBI nr
Match: KAA8530099.1 (hypothetical protein F0562_004808 [Nyssa sinensis])

HSP 1 Score: 67.4 bits (163), Expect = 5.09e-12
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKG 32
          MDA+DSVFDPLREFAKDSVRLVKRCHKPDRKG
Sbjct: 1  MDALDSVFDPLREFAKDSVRLVKRCHKPDRKG 32

[Close]

BLAST of IVF0024620 vs. NCBI nr
Match: MBA0819002.1 (hypothetical protein [Gossypium harknessii] >MBA0820464.1 hypothetical protein [Gossypium harknessii])

HSP 1 Score: 65.9 bits (159), Expect = 5.76e-12
Identity = 31/31 (100.00%), Postives = 31/31 (100.00%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 31
          MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK
Sbjct: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 31

[Close]

BLAST of IVF0024620 vs. NCBI nr
Match: VAH06259.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 67.4 bits (163), Expect = 6.56e-12
Identity = 41/65 (63.08%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRKGTSSQRSRFVQRLASSSWDSLVFSSSSSL 60
          MDAIDSV DPLREFAKDSVRLVKRCHKPDRKG         QRLA +  D + F     L
Sbjct: 1  MDAIDSVVDPLREFAKDSVRLVKRCHKPDRKGKD-------QRLAPARLDPVRFP----L 54

Query: 61 SPSIT 65
          SP +T
Sbjct: 61 SPDLT 54

[Close]

BLAST of IVF0024620 vs. TAIR 10
Match: AT4G24920.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

[Close]

BLAST of IVF0024620 vs. TAIR 10
Match: AT5G50460.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 63.2 bits (152), Expect = 1.6e-10
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          MDAIDSV DPLR+FAKDS+RLVKRCHKPDRK
Sbjct: 1  MDAIDSVVDPLRDFAKDSIRLVKRCHKPDRK 31

[Close]

BLAST of IVF0024620 vs. TAIR 10
Match: AT3G48570.1 (secE/sec61-gamma protein transport protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-08
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MDAIDSVFDPLREFAKDSVRLVKRCHKPDRK 32
          M+AIDS  DPLR+FAK SVRLV+RCHKPDRK
Sbjct: 1  MEAIDSAIDPLRDFAKSSVRLVQRCHKPDRK 31

The following BLAST results are available for this feature:

BLAST of IVF0024620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P38385	1.0e-09	93.55	Protein transport protein Sec61 subunit gamma OS=Oryza sativa subsp. japonica OX...	[more]
P0DI74	2.2e-09	90.32	Protein transport protein Sec61 subunit gamma-1 OS=Arabidopsis thaliana OX=3702 ...	[more]
P0DI75	2.2e-09	90.32	Protein transport protein Sec61 subunit gamma-2 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9SMP2	1.6e-07	80.65	Protein transport protein Sec61 subunit gamma-3 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q7Z1B8	2.1e-04	64.52	Protein transport protein Sec61 subunit gamma OS=Gryllotalpa orientalis OX=21349...	[more]

BLAST of IVF0024620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS8	2.4e-46	93.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097740 PE=4 SV=1	[more]
K3Y480	4.6e-10	50.46	Uncharacterized protein OS=Setaria italica OX=4555 PE=4 SV=1	[more]
A0A446T8U2	3.9e-09	61.54	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_5Av1G...	[more]
A0A446YW31	1.5e-08	91.43	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_7Bv1G...	[more]
A0A5J5AIQ6	1.5e-08	96.88	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_004808 PE=4 SV=1	[more]

BLAST of IVF0024620 vs. NCBI nr


Match Name	E-value	Identity	Description
VAI19780.1	8.16e-13	61.54	unnamed protein product [Triticum turgidum subsp. durum]	[more]
VAI92800.1	2.79e-12	91.43	unnamed protein product [Triticum turgidum subsp. durum]	[more]
KAA8530099.1	5.09e-12	96.88	hypothetical protein F0562_004808 [Nyssa sinensis]	[more]
MBA0819002.1	5.76e-12	100.00	hypothetical protein [Gossypium harknessii] >MBA0820464.1 hypothetical protein [...	[more]
VAH06259.1	6.56e-12	63.08	unnamed protein product [Triticum turgidum subsp. durum]	[more]

BLAST of IVF0024620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24920.1	1.6e-10	90.32	secE/sec61-gamma protein transport protein	[more]
AT5G50460.1	1.6e-10	90.32	secE/sec61-gamma protein transport protein	[more]
AT3G48570.1	1.1e-08	80.65	secE/sec61-gamma protein transport protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023391	Protein translocase SecE domain superfamily	GENE3D	1.20.5.820	Preprotein translocase SecE subunit	coord: 7..45 e-value: 7.1E-7 score: 30.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..78
None	No IPR available	PANTHER	PTHR12309:SF24	PROTEIN TRANSPORT PROTEIN SEC61 SUBUNIT GAMMA-3	coord: 1..101
None	No IPR available	PANTHER	PTHR12309	SEC61 GAMMA SUBUNIT	coord: 1..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024620.1	IVF0024620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006605	protein targeting
biological_process	GO:0071806	protein transmembrane transport
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008320	protein transmembrane transporter activity