IVF0024574 (gene) Melon (IVF77) v1

Overview
NameIVF0024574
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposable element Tf2
Locationchr04: 12532704 .. 12533142 (+)
RNA-Seq ExpressionIVF0024574
SyntenyIVF0024574
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATCGATTCCCTCTTTTATTTTCAAGTACCCTGGATTTTTATTGGAGTCACCAGCTTTCATCCAAAGCCAAATTCAAAATCTTAGGTAAGATTTTGCGTGTTAAATCGTGGGATAAGTATGACTATTCCCACTTGAACGAAGAACAAATAGCAAAATGGTTTAAAACCAATGCTCATCTCTCGTGAAGAAGAAGAAGATCAATTTCTTCTCGCAAAGAACTCAATCATAACCTCAATTGCTTGAGCAAAGTCTGAAGCGGACCTCCAAGTGGTCATGGAAATAGTCGTTAACAATAATTCTGACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTTTCAGATTCATCTGTCAATAATATCGATTTTGAAAATAATCCTTATTATAATTTTGATATTTCCGATCCTTATTTAGATTCCCAACCAGGATGA

mRNA sequence

ATGTATCGATTCCCTCTTTTATTTTCAAGTACCCTGGATTTTTATTGGAGTCACCAGCTTTCATCCAAAGCCAAATTCAAAATCTTAGGTAAGATTTTGCGTGTTAAATCGTGGGATAAGTATGACTATTCCCACTTGAACGAAGAACAAATAGCAAAATGGTTTAAAACCAATTCTGAAGCGGACCTCCAAGTGGTCATGGAAATAGTCGTTAACAATAATTCTGACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTTTCAGATTCATCTGTCAATAATATCGATTTTGAAAATAATCCTTATTATAATTTTGATATTTCCGATCCTTATTTAGATTCCCAACCAGGATGA

Coding sequence (CDS)

ATGTATCGATTCCCTCTTTTATTTTCAAGTACCCTGGATTTTTATTGGAGTCACCAGCTTTCATCCAAAGCCAAATTCAAAATCTTAGGTAAGATTTTGCGTGTTAAATCGTGGGATAAGTATGACTATTCCCACTTGAACGAAGAACAAATAGCAAAATGGTTTAAAACCAATTCTGAAGCGGACCTCCAAGTGGTCATGGAAATAGTCGTTAACAATAATTCTGACGACAACAAACAAAATGACCCTGAAGATATCACAAATCTTTCAGATTCATCTGTCAATAATATCGATTTTGAAAATAATCCTTATTATAATTTTGATATTTCCGATCCTTATTTAGATTCCCAACCAGGATGA

Protein sequence

MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTNSEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDSQPG
Homology
BLAST of IVF0024574 vs. ExPASy TrEMBL
Match: A0A5A7U8X4 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G001080 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 3.9e-39
Identity = 95/144 (65.97%), Postives = 101/144 (70.14%), Query Frame = 0

Query: 2   YRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--- 61
           YRF L F     F W HQLSS+AKFKILGKILRVK WDKYDYS LNEE+IAKWFKTN   
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  -----------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVN 120
                                  SEADLQ VME VVNNNSDDNKQ+DPEDI N+SDSSVN
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

BLAST of IVF0024574 vs. ExPASy TrEMBL
Match: A0A5D3CI63 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold263G00370 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.6e-35
Identity = 86/128 (67.19%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 17  SHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN------------------ 76
           SHQLSS+AKFKILGKIL V+ WD+YDYSHLNEEQIAKWFK N                  
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  --------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDIS 119
                   SEADLQ VM+ VVNNNSDD KQ+ PEDITNLS+SSVN+IDFENNPYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

BLAST of IVF0024574 vs. ExPASy TrEMBL
Match: A0A5A7UEA0 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G00850 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.4e-33
Identity = 84/145 (57.93%), Postives = 96/145 (66.21%), Query Frame = 0

Query: 1   MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN-- 60
           MYRF L F  +  F W HQLSS+AKFKI GKIL VK WDKY+YSHL+E+QI KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  ------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSV 120
                                   SEADLQ +M+ VV+N  DDNK++DPED    SDSSV
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

BLAST of IVF0024574 vs. ExPASy TrEMBL
Match: A0A0A0KXT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 2.9e-26
Identity = 76/142 (53.52%), Postives = 88/142 (61.97%), Query Frame = 0

Query: 1   MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN-- 60
           MYRF L F     FYWSHQLS++AKFKIL KILRVK WD      +NEE+IAKWFKTN  
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60

Query: 61  ------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSV 117
                                   SEADLQ VME V++   DD+K+ND ED    S+S  
Sbjct: 61  LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120

BLAST of IVF0024574 vs. ExPASy TrEMBL
Match: A0A5D3BY11 (Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1133G00050 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.5e-24
Identity = 68/103 (66.02%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 39  DKYDYSHLNEEQIAKWFKTN-------------------------SEADLQVVMEIVVNN 98
           DKYDYS LNEEQIAKWFKTN                         SEADLQ VME VVNN
Sbjct: 103 DKYDYSRLNEEQIAKWFKTNAHLSREEDQFLLAKNSIMTSIAEAKSEADLQAVMETVVNN 162

Query: 99  NSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDS 117
           NSDDNKQ+ PEDI NLSDSSVN+IDF N+PYYNFDI DPYLDS
Sbjct: 163 NSDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIFDPYLDS 205

BLAST of IVF0024574 vs. NCBI nr
Match: KAA0050626.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (433), Expect = 2.04e-51
Identity = 95/144 (65.97%), Postives = 101/144 (70.14%), Query Frame = 0

Query: 2   YRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN--- 61
           YRF L F     F W HQLSS+AKFKILGKILRVK WDKYDYS LNEE+IAKWFKTN   
Sbjct: 58  YRFSLYFQVPWIFCWCHQLSSRAKFKILGKILRVKWWDKYDYSCLNEEEIAKWFKTNARL 117

Query: 62  -----------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVN 119
                                  SEADLQ VME VVNNNSDDNKQ+DPEDI N+SDSSVN
Sbjct: 118 SREEEDQFLLAKNSIMTSIAGAKSEADLQAVMETVVNNNSDDNKQDDPEDIINISDSSVN 177

BLAST of IVF0024574 vs. NCBI nr
Match: KAA0026133.1 (hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593.1 hypothetical protein E5676_scaffold263G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 158 bits (400), Expect = 1.63e-46
Identity = 86/128 (67.19%), Postives = 94/128 (73.44%), Query Frame = 0

Query: 17  SHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN------------------ 76
           SHQLSS+AKFKILGKIL V+ WD+YDYSHLNEEQIAKWFK N                  
Sbjct: 65  SHQLSSRAKFKILGKILCVEWWDEYDYSHLNEEQIAKWFKVNAHLSREEEDQFLLVKNSV 124

Query: 77  --------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDIS 118
                   SEADLQ VM+ VVNNNSDD KQ+ PEDITNLS+SSVN+IDFENNPYYNFDI 
Sbjct: 125 MTTITGAKSEADLQAVMKTVVNNNSDDKKQDGPEDITNLSNSSVNDIDFENNPYYNFDIF 184

BLAST of IVF0024574 vs. NCBI nr
Match: KAA0051819.1 (Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransposable element Tf2 [Cucumis melo var. makuwa])

HSP 1 Score: 152 bits (383), Expect = 7.83e-44
Identity = 84/145 (57.93%), Postives = 96/145 (66.21%), Query Frame = 0

Query: 1   MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN-- 60
           MYRF L F  +  F W HQLSS+AKFKI GKIL VK WDKY+YSHL+E+QI KWFKTN  
Sbjct: 57  MYRFSLYFQVSWIFLWIHQLSSRAKFKIFGKILPVKWWDKYNYSHLDEDQITKWFKTNAR 116

Query: 61  ------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSV 119
                                   SEADLQ +M+ VV+N  DDNK++DPED    SDSSV
Sbjct: 117 LLREEEDQFLLAKNSIMTSIAGAKSEADLQAIMKTVVHNIFDDNKEDDPEDTRISSDSSV 176

BLAST of IVF0024574 vs. NCBI nr
Match: KGN53659.1 (hypothetical protein Csa_014527 [Cucumis sativus])

HSP 1 Score: 128 bits (322), Expect = 2.45e-35
Identity = 76/142 (53.52%), Postives = 88/142 (61.97%), Query Frame = 0

Query: 1   MYRFPLLFSSTLDFYWSHQLSSKAKFKILGKILRVKSWDKYDYSHLNEEQIAKWFKTN-- 60
           MYRF L F     FYWSHQLS++AKFKIL KILRVK WD      +NEE+IAKWFKTN  
Sbjct: 1   MYRFSLYFQVLWIFYWSHQLSTRAKFKILRKILRVKWWDN---DLVNEEKIAKWFKTNTH 60

Query: 61  ------------------------SEADLQVVMEIVVNNNSDDNKQNDPEDITNLSDSSV 116
                                   SEADLQ VME V++   DD+K+ND ED    S+S  
Sbjct: 61  LSQEEEDQFLLRKNSIMTFIAGAKSEADLQTVMETVIHTIYDDDKENDVEDTRISSNSFA 120

BLAST of IVF0024574 vs. NCBI nr
Match: TYK04653.1 (cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (305), Expect = 5.42e-32
Identity = 68/103 (66.02%), Postives = 71/103 (68.93%), Query Frame = 0

Query: 39  DKYDYSHLNEEQIAKWFKTN-------------------------SEADLQVVMEIVVNN 98
           DKYDYS LNEEQIAKWFKTN                         SEADLQ VME VVNN
Sbjct: 103 DKYDYSRLNEEQIAKWFKTNAHLSREEDQFLLAKNSIMTSIAEAKSEADLQAVMETVVNN 162

Query: 99  NSDDNKQNDPEDITNLSDSSVNNIDFENNPYYNFDISDPYLDS 116
           NSDDNKQ+ PEDI NLSDSSVN+IDF N+PYYNFDI DPYLDS
Sbjct: 163 NSDDNKQDHPEDIINLSDSSVNDIDFANDPYYNFDIFDPYLDS 205

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U8X43.9e-3965.97Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A5D3CI632.6e-3567.19Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UEA02.4e-3357.93Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc... [more]
A0A0A0KXT52.9e-2653.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G097660 PE=4 SV=1[more]
A0A5D3BY113.5e-2466.02Cysteine-rich RLK RECEPTOR-like protein kinase OS=Cucumis melo var. makuwa OX=11... [more]
Match NameE-valueIdentityDescription
KAA0050626.12.04e-5165.97Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK07814.1 Retrotransp... [more]
KAA0026133.11.63e-4667.19hypothetical protein E6C27_scaffold19G00840 [Cucumis melo var. makuwa] >TYK11593... [more]
KAA0051819.17.83e-4457.93Retrotransposable element Tf2 [Cucumis melo var. makuwa] >TYK21425.1 Retrotransp... [more]
KGN53659.12.45e-3553.52hypothetical protein Csa_014527 [Cucumis sativus][more]
TYK04653.15.42e-3266.02cysteine-rich RLK RECEPTOR-like protein kinase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 74..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024574.1IVF0024574.1mRNA