IVF0024552 (gene) Melon (IVF77) v1

Overview


Name	IVF0024552
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag-pol polyprotein
Location	chr04: 16575234 .. 16575551 (-)
RNA-Seq Expression	IVF0024552
Synteny	IVF0024552

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGACGAGGAAGAATTTTTGTTTCGATCGTCTGTTTCTACTGTTCCCCATGAACAACTAACTACTACTAGTTCTTCAGTTAATACTGAAGTTATTAGCAATGAGAATAGCTCCAAATCTTCTCAGAAAGAGGTGATTTCGAATGAAGGAGGAAATGTTCCATCGTCATATATTCAGAAAAACCATCCTTCAAGTTCCATCATTGGGGATCCATCTTTTGGTATTATTACCAGGAAGAAGGACAAGATTGATTATGCCAAATTGATTGCTAATATTTGTTATACTTCATCTATTGAGCTTACATCTGTAGATTAA

mRNA sequence

ATGGATGACGAGGAAGAATTTTTGTTTCGATCGTCTGTTTCTACTGTTCCCCATGAACAACTAACTACTACTAGTTCTTCAGTTAATACTGAAGTTATTAGCAATGAGAATAGCTCCAAATCTTCTCAGAAAGAGGTGATTTCGAATGAAGGAGGAAATGTTCCATCGTCATATATTCAGAAAAACCATCCTTCAAGTTCCATCATTGGGGATCCATCTTTTGGTATTATTACCAGGAAGAAGGACAAGATTGATTATGCCAAATTGATTGCTAATATTTGTTATACTTCATCTATTGAGCTTACATCTGTAGATTAA

Coding sequence (CDS)

ATGGATGACGAGGAAGAATTTTTGTTTCGATCGTCTGTTTCTACTGTTCCCCATGAACAACTAACTACTACTAGTTCTTCAGTTAATACTGAAGTTATTAGCAATGAGAATAGCTCCAAATCTTCTCAGAAAGAGGTGATTTCGAATGAAGGAGGAAATGTTCCATCGTCATATATTCAGAAAAACCATCCTTCAAGTTCCATCATTGGGGATCCATCTTTTGGTATTATTACCAGGAAGAAGGACAAGATTGATTATGCCAAATTGATTGCTAATATTTGTTATACTTCATCTATTGAGCTTACATCTGTAGATTAA

Protein sequence

MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQKNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD

Homology

[Close]

BLAST of IVF0024552 vs. ExPASy TrEMBL
Match: A0A5D3BX65 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00450 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 8.4e-46
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDDEEEFLF+SSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSY+Q
Sbjct: 1   MDDEEEFLFQSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYVQ 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 106
           KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIE TSVD
Sbjct: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIEPTSVD 105

[Close]

BLAST of IVF0024552 vs. ExPASy TrEMBL
Match: A0A5A7T028 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold510G00590 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.9e-45
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDDEEEFLF+SSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSY+Q
Sbjct: 1   MDDEEEFLFQSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYVQ 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 106
           KNHPSSSIIGDPSFGIIT+KKDKIDYAKLIANICYTSSIE TSVD
Sbjct: 61  KNHPSSSIIGDPSFGIITKKKDKIDYAKLIANICYTSSIEPTSVD 105

[Close]

BLAST of IVF0024552 vs. ExPASy TrEMBL
Match: A0A5D3DW56 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold225G00590 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDDEEE LF+ S+S VP EQ T T  SVNTEVISN NSSKSSQKEVISNEGGN PSS++ 
Sbjct: 1   MDDEEELLFQPSISIVPPEQSTATIPSVNTEVISNGNSSKSSQKEVISNEGGNSPSSHVY 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 106
           KNHPSSS IGDPS GI TRKKDKIDYAKLIANICYTSSIE TS++
Sbjct: 61  KNHPSSSFIGDPSAGITTRKKDKIDYAKLIANICYTSSIEPTSIN 105

[Close]

BLAST of IVF0024552 vs. ExPASy TrEMBL
Match: A0A5D3E335 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00610 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDD EE  F+SSVST P  Q      SV+T V++++NSS  +QKE+  N  GN PSS+IQ
Sbjct: 1   MDDMEELFFQSSVSTNPPMQTINVVPSVDTCVLNDDNSSSPTQKELTPNVVGNPPSSHIQ 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 106
           KNH SSS I DP   I TRKKDKIDYAKLIANICYTSSIE TSV+
Sbjct: 61  KNHSSSSTINDPCASITTRKKDKIDYAKLIANICYTSSIEPTSVN 105

[Close]

BLAST of IVF0024552 vs. ExPASy TrEMBL
Match: A0A5A7UQX6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G001900 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 2.1e-20
Identity = 59/76 (77.63%), Postives = 64/76 (84.21%), Query Frame = 0


Query: 1  MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
          MDDEEE LF+ S+STVP EQ T T  SVNTEVISN NSSKSSQKEVISNEGGN PSS++ 
Sbjct: 1  MDDEEELLFQPSISTVPPEQSTATIPSVNTEVISNGNSSKSSQKEVISNEGGNSPSSHVY 60

Query: 61 KNHPSSSIIGDPSFGI 77
          KNHPSSS IGDPS G+
Sbjct: 61 KNHPSSSFIGDPSAGL 76

[Close]

BLAST of IVF0024552 vs. NCBI nr
Match: TYK03685.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 190 bits (483), Expect = 1.35e-60
Identity = 102/105 (97.14%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDDEEEFLF+SSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSY+Q
Sbjct: 1   MDDEEEFLFQSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYVQ 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 105
           KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIE TSVD
Sbjct: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIEPTSVD 105

[Close]

BLAST of IVF0024552 vs. NCBI nr
Match: KAA0036710.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 3.87e-60
Identity = 101/105 (96.19%), Postives = 104/105 (99.05%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDDEEEFLF+SSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSY+Q
Sbjct: 1   MDDEEEFLFQSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYVQ 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 105
           KNHPSSSIIGDPSFGIIT+KKDKIDYAKLIANICYTSSIE TSVD
Sbjct: 61  KNHPSSSIIGDPSFGIITKKKDKIDYAKLIANICYTSSIEPTSVD 105

[Close]

BLAST of IVF0024552 vs. NCBI nr
Match: TYK27718.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 153 bits (386), Expect = 1.83e-41
Identity = 84/105 (80.00%), Postives = 90/105 (85.71%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDDEEE LF+ S+S VP EQ T T  SVNTEVISN NSSKSSQKEVISNEGGN PSS++ 
Sbjct: 1   MDDEEELLFQPSISIVPPEQSTATIPSVNTEVISNGNSSKSSQKEVISNEGGNSPSSHVY 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 105
           KNHPSSS IGDPS GI TRKKDKIDYAKLIANICYTSSIE TS++
Sbjct: 61  KNHPSSSFIGDPSAGITTRKKDKIDYAKLIANICYTSSIEPTSIN 105

[Close]

BLAST of IVF0024552 vs. NCBI nr
Match: KAA0035847.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30296.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 4.96e-30
Identity = 67/105 (63.81%), Postives = 77/105 (73.33%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           MDD EE  F+SSVST P  Q      SV+T V++++NSS  +QKE+  N  GN PSS+IQ
Sbjct: 1   MDDMEELFFQSSVSTNPPMQTINVVPSVDTCVLNDDNSSSPTQKELTPNVVGNPPSSHIQ 60

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 105
           KNH SSS I DP   I TRKKDKIDYAKLIANICYTSSIE TSV+
Sbjct: 61  KNHSSSSTINDPCASITTRKKDKIDYAKLIANICYTSSIEPTSVN 105

[Close]

BLAST of IVF0024552 vs. NCBI nr
Match: TYK22672.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (257), Expect = 6.55e-25
Identity = 59/105 (56.19%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 1   MDDEEEFLFRSSVSTVPHEQLTTTSSSVNTEVISNENSSKSSQKEVISNEGGNVPSSYIQ 60
           +DD+++F    S   + HE   T S +V+T V + ++SSKS+QKEV+++    +PSS++Q
Sbjct: 99  LDDDDDF---PSKPAIVHELAITDSPTVDTSVNNFDDSSKSTQKEVMADVSEIIPSSHVQ 158

Query: 61  KNHPSSSIIGDPSFGIITRKKDKIDYAKLIANICYTSSIELTSVD 105
           KNHPSS IIGDPS GI T+KKDKIDYAK+IANICYTS IE T V+
Sbjct: 159 KNHPSSFIIGDPSIGITTKKKDKIDYAKMIANICYTSFIEPTLVN 200

The following BLAST results are available for this feature:

BLAST of IVF0024552 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024552 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BX65	8.4e-46	97.14	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7T028	1.9e-45	96.19	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DW56	1.5e-34	80.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3E335	1.3e-22	63.81	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5A7UQX6	2.1e-20	77.63	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0024552 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK03685.1	1.35e-60	97.14	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0036710.1	3.87e-60	96.19	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK27718.1	1.83e-41	80.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0035847.1	4.96e-30	63.81	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30296.1 putative m...	[more]
TYK22672.1	6.55e-25	56.19	gag-pol polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0024552 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024552.1	IVF0024552.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding