IVF0024523 (gene) Melon (IVF77) v1

Overview


Name	IVF0024523
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	CCHC-type domain-containing protein
Location	chr04: 5578134 .. 5578709 (+)
RNA-Seq Expression	IVF0024523
Synteny	IVF0024523

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGTTCATAATTATGAATTGTTTAAGATGGATGTTAATGAGATTATCACCGATATATTTAACTAGATTTACTAACATTATAAATGGATTGAAGGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAGTGTTGCATTAAAGACCATCTTCTTGGAAGTTGATCCCAAGATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

mRNA sequence

ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

Coding sequence (CDS)

ATGAATCAACTTAAAGAGTCTAAACTTAACATGCTTGGTCTTGGTAAAGTCTATACAACTTTTGAAAATAGTAGAAAAATTCTAAGGTCTCTACCTAAGACTTGGAACGCTAAGGTGACGGCAATCCAAGAAGCAAAGGATCTCACCAAACTTCCATTTGAGGAGCTCATTGGCTCACTTATGACTCATGAGATCATTATGAAGATGCACTTGGAGGATGAGTCCAAAAAGAATAAGAATGAGGATGACCTTGATGAAAATGACATTGCTTATTTCTCACGTAAGTACAAAAATTTCATAAAAAGGAAGAAGTATTTCAAGAAACACATGTCATCTCAAAAAGAGTCAAAAGATGAGAAAAGCAAAAAGGACGAGGTGATTTGTTATGAATGCAAAAGGTCGGGTCACATAAGAACGGATTGCCCTCTCCCTCGAATCATCTAA

Protein sequence

MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNKNEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECKRSGHIRTDCPLPRII

Homology

[Close]

BLAST of IVF0024523 vs. ExPASy TrEMBL
Match: A0A5A7U923 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00640 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.3e-56
Identity = 124/139 (89.21%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 1   MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSL 60
           MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSL
Sbjct: 1   MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSL 60

Query: 61  MTHEIIMKMHLEDESKKN--------------KNEDDLDENDIAYFSRKYKNFIKRKKYF 120
           MTHEIIMKMHLEDESKKN              K+EDDLDENDIAYFSRKYKNFIKRKKYF
Sbjct: 61  MTHEIIMKMHLEDESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYF 120

Query: 121 KKHMSSQKESKDEKSKKDE 126
           KKHMSSQKESKDEKSKKDE
Sbjct: 121 KKHMSSQKESKDEKSKKDE 139

[Close]

BLAST of IVF0024523 vs. ExPASy TrEMBL
Match: A0A5A7TRZ7 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1333G00310 PE=4 SV=1)

HSP 1 Score: 184.1 bits (466), Expect = 4.2e-43
Identity = 99/130 (76.15%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 25  RKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNK----- 84
           RKIL  LPKTW+AKVTAIQEAKDLTKLP EELIGSLMTHEIIM+ HLEDESKK K     
Sbjct: 3   RKILMFLPKTWDAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMEEHLEDESKKKKSIALN 62

Query: 85  -------NEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECK 143
                  +EDDLDE+DI YFSRKYKNFIKRKK FKK++S+QK SK EKSKKDEVICYECK
Sbjct: 63  TISLELEDEDDLDEDDIVYFSRKYKNFIKRKKCFKKYLSTQKVSKGEKSKKDEVICYECK 122

[Close]

BLAST of IVF0024523 vs. ExPASy TrEMBL
Match: A0A6J1F0H1 (uncharacterized protein LOC111438099 OS=Cucurbita moschata OX=3662 GN=LOC111438099 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.8e-41
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 0


Query: 9   LNML-GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIM 68
           LN L  LGKVY+T EN RKILRSLPK+W AKVTAIQEAKDLTKLP +EL+GSLMTHEI M
Sbjct: 159 LNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITM 218

Query: 69  KMHLEDESKKNK------------NEDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKE 128
             H+E+ESKK K            +ED LDE+D+AYF+RKYKNFIKRKK FKKH ++QKE
Sbjct: 219 NGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKE 278

Query: 129 SKDEKSKKDEVICYECKRSG 136
           SK EKSK DEVICYECK+ G
Sbjct: 279 SKGEKSKNDEVICYECKKPG 298

[Close]

BLAST of IVF0024523 vs. ExPASy TrEMBL
Match: A0A5A7TZF4 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00480 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 2.6e-37
Identity = 88/116 (75.86%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 42  IQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNK--------------NEDDLDEN 101
           IQEAKDLTKLP EELIGSLMTHEIIM  HLEDESKK K              +EDDLD++
Sbjct: 3   IQEAKDLTKLPLEELIGSLMTHEIIMTEHLEDESKKKKSIALKTISLEVDPEDEDDLDQD 62

Query: 102 DIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECKRSGHIRTDCPL 144
           DI Y SRKYKNFIKRKKYFKKH+S+QKESK EKSKKDEVICYECK+S HIRTDCPL
Sbjct: 63  DITYLSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKKSNHIRTDCPL 118

[Close]

BLAST of IVF0024523 vs. ExPASy TrEMBL
Match: A0A5D3E1G2 (Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold64G00350 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 5.8e-37
Identity = 87/116 (75.00%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 42  IQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNK--------------NEDDLDEN 101
           IQEAKDLTKLP EELIGSLMTHEIIM  HLEDESKK K              +EDDLD++
Sbjct: 3   IQEAKDLTKLPLEELIGSLMTHEIIMTEHLEDESKKKKSIALKTISLEVDPEDEDDLDQD 62

Query: 102 DIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECKRSGHIRTDCPL 144
           DI Y SRKYKNFIK+KKYFKKH+S+QKESK EKSKKDEVICYECK+S HIRTDCPL
Sbjct: 63  DITYLSRKYKNFIKKKKYFKKHLSTQKESKGEKSKKDEVICYECKKSNHIRTDCPL 118

[Close]

BLAST of IVF0024523 vs. NCBI nr
Match: KAA0051650.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYJ97960.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 227 bits (578), Expect = 1.45e-71
Identity = 124/139 (89.21%), Postives = 125/139 (89.93%), Query Frame = 0


Query: 1   MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSL 60
           MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSL
Sbjct: 1   MNQLKESKLNMLGLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSL 60

Query: 61  MTHEIIMKMHLEDESKKNKN--------------EDDLDENDIAYFSRKYKNFIKRKKYF 120
           MTHEIIMKMHLEDESKKNK+              EDDLDENDIAYFSRKYKNFIKRKKYF
Sbjct: 61  MTHEIIMKMHLEDESKKNKSVALKTIFLEVDPKDEDDLDENDIAYFSRKYKNFIKRKKYF 120

Query: 121 KKHMSSQKESKDEKSKKDE 125
           KKHMSSQKESKDEKSKKDE
Sbjct: 121 KKHMSSQKESKDEKSKKDE 139

[Close]

BLAST of IVF0024523 vs. NCBI nr
Match: XP_031741720.1 (uncharacterized protein LOC116403915 [Cucumis sativus])

HSP 1 Score: 221 bits (564), Expect = 9.08e-66
Identity = 119/145 (82.07%), Postives = 123/145 (84.83%), Query Frame = 0


Query: 13  GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLE 72
           GLGKVYTT EN RKILRSLPKTW AKVTAIQEAKDLTKLP EELIGSLMTHEIIMK HLE
Sbjct: 163 GLGKVYTTSENVRKILRSLPKTWEAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMKEHLE 222

Query: 73  DESKKNKN--------------EDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKD 132
           DESKK K+              ED LDE+DIAYFSRKYKNFIKRKKYFKKH+S+QKESK 
Sbjct: 223 DESKKKKSIALKTISLEVDPEDEDGLDEDDIAYFSRKYKNFIKRKKYFKKHLSTQKESKG 282

Query: 133 EKSKKDEVICYECKRSGHIRTDCPL 143
           EKSKKDEVICYECKRSGHIRTDCPL
Sbjct: 283 EKSKKDEVICYECKRSGHIRTDCPL 307

[Close]

BLAST of IVF0024523 vs. NCBI nr
Match: KAA0046182.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa] >TYK00208.1 zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 183 bits (464), Expect = 1.88e-53
Identity = 99/130 (76.15%), Postives = 107/130 (82.31%), Query Frame = 0


Query: 25  RKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNKN---- 84
           RKIL  LPKTW+AKVTAIQEAKDLTKLP EELIGSLMTHEIIM+ HLEDESKK K+    
Sbjct: 3   RKILMFLPKTWDAKVTAIQEAKDLTKLPLEELIGSLMTHEIIMEEHLEDESKKKKSIALN 62

Query: 85  --------EDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECK 142
                   EDDLDE+DI YFSRKYKNFIKRKK FKK++S+QK SK EKSKKDEVICYECK
Sbjct: 63  TISLELEDEDDLDEDDIVYFSRKYKNFIKRKKCFKKYLSTQKVSKGEKSKKDEVICYECK 122

[Close]

BLAST of IVF0024523 vs. NCBI nr
Match: XP_022931810.1 (uncharacterized protein LOC111438099 [Cucurbita moschata])

HSP 1 Score: 178 bits (452), Expect = 1.50e-52
Identity = 98/140 (70.00%), Postives = 111/140 (79.29%), Query Frame = 0


Query: 9   LNML-GLGKVYTTFENSRKILRSLPKTWNAKVTAIQEAKDLTKLPFEELIGSLMTHEIIM 68
           LN L  LGKVY+T EN RKILRSLPK+W AKVTAIQEAKDLTKLP +EL+GSLMTHEI M
Sbjct: 159 LNALKNLGKVYSTSENVRKILRSLPKSWEAKVTAIQEAKDLTKLPLDELVGSLMTHEITM 218

Query: 69  KMHLEDESKKNKN------------EDDLDENDIAYFSRKYKNFIKRKKYFKKHMSSQKE 128
             H+E+ESKK K+            ED LDE+D+AYF+RKYKNFIKRKK FKKH ++QKE
Sbjct: 219 NGHMEEESKKKKSIALKSIKVDSEDEDVLDEDDVAYFTRKYKNFIKRKKQFKKHFTNQKE 278

Query: 129 SKDEKSKKDEVICYECKRSG 135
           SK EKSK DEVICYECK+ G
Sbjct: 279 SKGEKSKNDEVICYECKKPG 298

[Close]

BLAST of IVF0024523 vs. NCBI nr
Match: KAA0046765.1 (zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 163 bits (413), Expect = 1.38e-47
Identity = 88/116 (75.86%), Postives = 94/116 (81.03%), Query Frame = 0


Query: 42  IQEAKDLTKLPFEELIGSLMTHEIIMKMHLEDESKKNKN--------------EDDLDEN 101
           IQEAKDLTKLP EELIGSLMTHEIIM  HLEDESKK K+              EDDLD++
Sbjct: 3   IQEAKDLTKLPLEELIGSLMTHEIIMTEHLEDESKKKKSIALKTISLEVDPEDEDDLDQD 62

Query: 102 DIAYFSRKYKNFIKRKKYFKKHMSSQKESKDEKSKKDEVICYECKRSGHIRTDCPL 143
           DI Y SRKYKNFIKRKKYFKKH+S+QKESK EKSKKDEVICYECK+S HIRTDCPL
Sbjct: 63  DITYLSRKYKNFIKRKKYFKKHLSTQKESKGEKSKKDEVICYECKKSNHIRTDCPL 118

The following BLAST results are available for this feature:

BLAST of IVF0024523 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024523 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U923	4.3e-56	89.21	Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo...	[more]
A0A5A7TRZ7	4.2e-43	76.15	Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo...	[more]
A0A6J1F0H1	1.8e-41	70.00	uncharacterized protein LOC111438099 OS=Cucurbita moschata OX=3662 GN=LOC1114380...	[more]
A0A5A7TZF4	2.6e-37	75.86	Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo...	[more]
A0A5D3E1G2	5.8e-37	75.00	Zf-CCHC domain-containing protein/UBN2 domain-containing protein OS=Cucumis melo...	[more]

BLAST of IVF0024523 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051650.1	1.45e-71	89.21	zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo v...	[more]
XP_031741720.1	9.08e-66	82.07	uncharacterized protein LOC116403915 [Cucumis sativus]	[more]
KAA0046182.1	1.88e-53	76.15	zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo v...	[more]
XP_022931810.1	1.50e-52	70.00	uncharacterized protein LOC111438099 [Cucurbita moschata]	[more]
KAA0046765.1	1.38e-47	75.86	zf-CCHC domain-containing protein/UBN2 domain-containing protein [Cucumis melo v...	[more]

BLAST of IVF0024523 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 127..142 e-value: 1.3E-4 score: 21.9
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 128..142 score: 9.735132
None	No IPR available	GENE3D	4.10.60.10		coord: 103..146 e-value: 2.7E-6 score: 29.1
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 9..142
None	No IPR available	PANTHER	PTHR34676:SF4	OS06G0684500 PROTEIN	coord: 9..142
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 112..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024523.1	IVF0024523.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding