IVF0024512 (gene) Melon (IVF77) v1

Overview
NameIVF0024512
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCACTA en-spm transposon protein
Locationchr04: 10488970 .. 10489179 (-)
RNA-Seq ExpressionIVF0024512
SyntenyIVF0024512
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCACCCAAGCCGAAGGCCTACAAGATGATGAGTGAGAGTAGTTCCACGACGTCATGTTCTCACTCAGCCACCGAAAGAGAGATTCAAATACAAGCTAAACTTGATCAATCTTTGAAACAAATTGAATTGCAAGATAGAAATTACCAAGCGTTAGTTTCAAAAATGGAACAAATGCAAAAGCTGATACAGGACATGACTCGGGCATAA

mRNA sequence

ATGGCACCCAAGCCGAAGGCCTACAAGATGATGAGTGAGAGTAGTTCCACGACGTCATGTTCTCACTCAGCCACCGAAAGAGAGATTCAAATACAAGCTAAACTTGATCAATCTTTGAAACAAATTGAATTGCAAGATAGAAATTACCAAGCGTTAGTTTCAAAAATGGAACAAATGCAAAAGCTGATACAGGACATGACTCGGGCATAA

Coding sequence (CDS)

ATGGCACCCAAGCCGAAGGCCTACAAGATGATGAGTGAGAGTAGTTCCACGACGTCATGTTCTCACTCAGCCACCGAAAGAGAGATTCAAATACAAGCTAAACTTGATCAATCTTTGAAACAAATTGAATTGCAAGATAGAAATTACCAAGCGTTAGTTTCAAAAATGGAACAAATGCAAAAGCTGATACAGGACATGACTCGGGCATAA

Protein sequence

MAPKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKLIQDMTRA
Homology
BLAST of IVF0024512 vs. ExPASy TrEMBL
Match: A0A5D3DJ43 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2774G00020 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.6e-16
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PKPKA K  S SSSTTS S SATEREIQIQAKLDQ+L++I+LQDRNYQAL S+MEQM+KL
Sbjct: 186 PKPKARKTTSASSSTTSWSQSATEREIQIQAKLDQALERIKLQDRNYQALASEMEQMRKL 245

Query: 63  IQDMTRA 70
           IQDMTRA
Sbjct: 246 IQDMTRA 252

BLAST of IVF0024512 vs. ExPASy TrEMBL
Match: A0A5A7VDG9 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2317G00010 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.0e-16
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PKPKA K MS SSSTTS S SATEREIQIQAKLDQ L++IELQDRNY AL  +MEQMQKL
Sbjct: 82  PKPKARKRMSVSSSTTSYSQSATEREIQIQAKLDQGLERIELQDRNYLALALEMEQMQKL 141

Query: 63  IQDMTRA 70
           IQDMTRA
Sbjct: 142 IQDMTRA 148

BLAST of IVF0024512 vs. ExPASy TrEMBL
Match: A0A5A7VKQ4 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00150 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.6e-16
Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PK K  K MS SSSTTSCS SATEREIQIQAKLDQ L++IE QDRN+QAL S+MEQM+KL
Sbjct: 657 PKSKVLKTMSASSSTTSCSQSATEREIQIQAKLDQDLERIEFQDRNFQALASEMEQMRKL 716

Query: 63  IQDMTRA 70
           I DMTRA
Sbjct: 717 IHDMTRA 723

BLAST of IVF0024512 vs. ExPASy TrEMBL
Match: A0A5A7TXR1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold216G00280 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.9e-16
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PKPKA K  S SSSTTSCS SATEREIQIQ KLDQ+L++I+LQDRNYQAL S+MEQM+KL
Sbjct: 69  PKPKARKTTSASSSTTSCSQSATEREIQIQDKLDQALERIKLQDRNYQALTSEMEQMRKL 128

Query: 63  IQDMTR 69
           I DMTR
Sbjct: 129 IHDMTR 134

BLAST of IVF0024512 vs. ExPASy TrEMBL
Match: A0A5A7TBN0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold345G00100 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.3e-15
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PKPKA KMMS SS TTSC  SAT+REIQI AKLDQ+L++IELQDRN+QAL  +MEQ++KL
Sbjct: 215 PKPKARKMMSASSFTTSCFQSATKREIQILAKLDQALERIELQDRNFQALALEMEQIRKL 274

Query: 63  IQDMTRA 70
           IQDMTRA
Sbjct: 275 IQDMTRA 281

BLAST of IVF0024512 vs. NCBI nr
Match: KAA0065324.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.6 bits (231), Expect = 2.52e-22
Identity = 55/67 (82.09%), Postives = 58/67 (86.57%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PKPKA K MS SSSTTS S SATEREIQIQAKLDQ L++IELQDRNY AL  +MEQMQKL
Sbjct: 82  PKPKARKRMSVSSSTTSYSQSATEREIQIQAKLDQGLERIELQDRNYLALALEMEQMQKL 141

Query: 63  IQDMTRA 69
           IQDMTRA
Sbjct: 142 IQDMTRA 148

BLAST of IVF0024512 vs. NCBI nr
Match: KAA0046746.1 (uncharacterized protein E6C27_scaffold216G00280 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 6.30e-22
Identity = 52/66 (78.79%), Postives = 58/66 (87.88%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PKPKA K  S SSSTTSCS SATEREIQIQ KLDQ+L++I+LQDRNYQAL S+MEQM+KL
Sbjct: 69  PKPKARKTTSASSSTTSCSQSATEREIQIQDKLDQALERIKLQDRNYQALTSEMEQMRKL 128

Query: 63  IQDMTR 68
           I DMTR
Sbjct: 129 IHDMTR 134

BLAST of IVF0024512 vs. NCBI nr
Match: KAA0063205.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK23488.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 2.17e-21
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PKPKA K  S SSSTTS S SATEREIQIQAKLDQ+L++I+LQDRNYQAL S+MEQM+KL
Sbjct: 186 PKPKARKTTSASSSTTSWSQSATEREIQIQAKLDQALERIKLQDRNYQALASEMEQMRKL 245

Query: 63  IQDMTRA 69
           IQDMTRA
Sbjct: 246 IQDMTRA 252

BLAST of IVF0024512 vs. NCBI nr
Match: KAA0054699.1 (zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYJ95596.1 zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 1.35e-20
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PK KA K    SSSTTSCS S TEREIQIQAKLDQ+L+Q ELQDRNYQAL  +MEQ++KL
Sbjct: 40  PKSKARKTTCASSSTTSCSQSTTEREIQIQAKLDQALEQNELQDRNYQALALEMEQIRKL 99

Query: 63  IQDMTRA 69
           IQDMTRA
Sbjct: 100 IQDMTRA 106

BLAST of IVF0024512 vs. NCBI nr
Match: KAA0063986.1 (uncharacterized protein E6C27_scaffold616G001520 [Cucumis melo var. makuwa] >TYK05150.1 uncharacterized protein E5676_scaffold1415G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 4.70e-20
Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 3   PKPKAYKMMSESSSTTSCSHSATEREIQIQAKLDQSLKQIELQDRNYQALVSKMEQMQKL 62
           PK KA+K  S +SS TSCS SATEREIQIQ K DQ+L+QIELQDRNYQAL  +MEQM+K+
Sbjct: 88  PKRKAFKTTSANSSMTSCSQSATEREIQIQVKCDQALEQIELQDRNYQALALEMEQMRKM 147

Query: 63  IQDMTR 68
           IQDMTR
Sbjct: 148 IQDMTR 153

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DJ431.6e-1680.60CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7VDG92.0e-1682.09CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5A7VKQ44.6e-1677.61CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7TXR15.9e-1678.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7TBN02.3e-1576.12CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
Match NameE-valueIdentityDescription
KAA0065324.12.52e-2282.09CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0046746.16.30e-2278.79uncharacterized protein E6C27_scaffold216G00280 [Cucumis melo var. makuwa][more]
KAA0063205.12.17e-2180.60CACTA en-spm transposon protein [Cucumis melo var. makuwa] >TYK23488.1 CACTA en-... [more]
KAA0054699.11.35e-2076.12zinc finger protein ZPR1-like protein [Cucumis melo var. makuwa] >TYJ95596.1 zin... [more]
KAA0063986.14.70e-2074.24uncharacterized protein E6C27_scaffold616G001520 [Cucumis melo var. makuwa] >TYK... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 49..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 10..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024512.1IVF0024512.1mRNA