IVF0024493 (gene) Melon (IVF77) v1

Overview


Name	IVF0024493
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RING-type E3 ubiquitin transferase
Location	chr12: 1818263 .. 1818707 (+)
RNA-Seq Expression	IVF0024493
Synteny	IVF0024493

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCACCAATTTTTTTACCGCCCCTCTTACCGTTGCCACCATCGCCGTTGCCGCCGTTGCACTCACCGATCGTACTTCCTCGCTCCATCGAGGATTTGCTGATGCTCTCCATGTTTATTCTCTTAGTCATTGCCATTTTATGTGGCAAACGGTCTACCAAATCTGACGAGGAAGAGTTGTTGTTGGAGAATCTGGACATTCAAGCATCGATTTTTTCATTATGGCGTAGATGGAAACGGCGAACAAGAATGTGCAATTTGCCTTTACAAAATTGAAGAATGAGAGAAGTGTAGAAAGATGAAGACATGTGGTCACGTGTTTCATAAAGACTGCATTGATCGATGGTTTACGGTGGAGCTTCATTGTCCACTTTGTCGGACGTCGGTTTGTGTGGTAGTTGATCGCAGTGAAAATGCGATGACTTCTCTTCATTCTTTCTGA

mRNA sequence

ATGTCATCACCAATTTTTTTACCGCCCCTCTTACCGTTGCCACCATCGCCGTTGCCGCCGTTGCACTCACCGATCGTACTTCCTCGCTCCATCGAGGATTTGCTGATGCTCTCCATGTTTATTCTCTTAGTCATTGCCATTTTATGTGGCAAACGGTCTACCAAATCTGACGAGGAAGAGTTGTTGTTGGAGAATCTGGACATTCAAGCATCGATTTTTTCATTATGGCAGAAGTGTAGAAAGATGAAGACATGTGGTCACGTGTTTCATAAAGACTGCATTGATCGATGGTTTACGGTGGAGCTTCATTGTCCACTTTGTCGGACGTCGGTTTGTGTGGTAGTTGATCGCAGTGAAAATGCGATGACTTCTCTTCATTCTTTCTGA

Coding sequence (CDS)

ATGTCATCACCAATTTTTTTACCGCCCCTCTTACCGTTGCCACCATCGCCGTTGCCGCCGTTGCACTCACCGATCGTACTTCCTCGCTCCATCGAGGATTTGCTGATGCTCTCCATGTTTATTCTCTTAGTCATTGCCATTTTATGTGGCAAACGGTCTACCAAATCTGACGAGGAAGAGTTGTTGTTGGAGAATCTGGACATTCAAGCATCGATTTTTTCATTATGGCAGAAGTGTAGAAAGATGAAGACATGTGGTCACGTGTTTCATAAAGACTGCATTGATCGATGGTTTACGGTGGAGCTTCATTGTCCACTTTGTCGGACGTCGGTTTGTGTGGTAGTTGATCGCAGTGAAAATGCGATGACTTCTCTTCATTCTTTCTGA

Protein sequence

MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFILLVIAILCGKRSTKSDEEELLLENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSVCVVVDRSENAMTSLHSF

Homology

[Close]

BLAST of IVF0024493 vs. ExPASy Swiss-Prot
Match: Q9LUZ9 (RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.3e-07
Identity = 25/73 (34.25%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 55  KSDEEELLLENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSVCVV 114
           +++EEE   E   I   ++      RK++ CGH FH +CID W +    CPLCR+ V   
Sbjct: 127 ENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAA 186

Query: 115 VDRSENAMTSLHS 128
           V   EN   ++++
Sbjct: 187 VSDEENLKLAVNA 199

[Close]

BLAST of IVF0024493 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.8e-06
Identity = 23/55 (41.82%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 57  DEEELLLENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSV 112
           +EEE   +   +  S F   +K R +  C H+FH DCID W     +CPLCRT V
Sbjct: 129 EEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of IVF0024493 vs. ExPASy Swiss-Prot
Match: Q9LZJ6 (RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.8e-06
Identity = 23/49 (46.94%), Postives = 26/49 (53.06%), Query Frame = 0


Query: 63  LENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSV 112
           LE   +  S F    + R +  CGHVFH DCID WF     CPLCR  V
Sbjct: 110 LEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of IVF0024493 vs. ExPASy Swiss-Prot
Match: Q9SN27 (E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.6e-06
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 67  DIQASI----FSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSV 112
           D Q S+    +   +K ++M +CGH FH +CID W T    CPLCR S+
Sbjct: 94  DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL 142

[Close]

BLAST of IVF0024493 vs. ExPASy Swiss-Prot
Match: Q9SRM0 (RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.6e-06
Identity = 22/67 (32.84%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 47  ILCGKRSTKSDEEELLLENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPL 106
           +LC +   + +EE    +   I    F   +K + +  C H +H +C+DRW   E  CPL
Sbjct: 92  VLCRRERAEEEEE----KECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPL 151

Query: 107 CRTSVCV 114
           CR S+ V
Sbjct: 152 CRVSIRV 154

[Close]

BLAST of IVF0024493 vs. ExPASy TrEMBL
Match: A0A5D3BEE2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002240 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.6e-46
Identity = 107/151 (70.86%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFIL----LVIAILCGKRSTKS 60
           MSSPI LP LLPLPPSP+PPLHSPIVLPRSIEDLLMLSM +L    LVI ILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPPSPVPPLHSPIVLPRSIEDLLMLSMLLLLVLILVITILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSL-------------------WQKCRKMKTCGHVFHKDCIDRW 120
           DEEE L +N+DIQA IF                      +KCRK+KTCGHVFHKDCIDRW
Sbjct: 61  DEEESLSKNIDIQAPIFHYSVDGDIEQECAICLCEIEEGEKCRKIKTCGHVFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 129
           FTVELHCPLCRTSVCVVVD SENAM S  SF
Sbjct: 121 FTVELHCPLCRTSVCVVVDCSENAMASSSSF 151

[Close]

BLAST of IVF0024493 vs. ExPASy TrEMBL
Match: A0A1S3C6H2 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497232 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.6e-46
Identity = 107/151 (70.86%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFIL----LVIAILCGKRSTKS 60
           MSSPI LP LLPLPPSP+PPLHSPIVLPRSIEDLLMLSM +L    LVI ILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPPSPVPPLHSPIVLPRSIEDLLMLSMLLLLVLILVITILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSL-------------------WQKCRKMKTCGHVFHKDCIDRW 120
           DEEE L +N+DIQA IF                      +KCRK+KTCGHVFHKDCIDRW
Sbjct: 61  DEEESLSKNIDIQAPIFHYSVDGDIEQECAICLCEIEEGEKCRKIKTCGHVFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 129
           FTVELHCPLCRTSVCVVVD SENAM S  SF
Sbjct: 121 FTVELHCPLCRTSVCVVVDCSENAMASSSSF 151

[Close]

BLAST of IVF0024493 vs. ExPASy TrEMBL
Match: A0A5A7VKL1 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00600 PE=3 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.7e-46
Identity = 109/151 (72.19%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFIL----LVIAILCGKRSTKS 60
           MSSPI LP LLPLP SPLPPLHSPI+LPRSIEDLLMLSMF+L    LVIAILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPLSPLPPLHSPIILPRSIEDLLMLSMFLLLVLILVIAILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSL-------------------WQKCRKMKTCGHVFHKDCIDRW 120
           DE+E L +NLDIQASIF                      +KCRKMKTCGHVFHKDCIDRW
Sbjct: 61  DEKE-LSKNLDIQASIFHYGIDGDDKQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 129
           FTVELHCPLCRT VCVVVDRSEN M S  SF
Sbjct: 121 FTVELHCPLCRTLVCVVVDRSENVMASSSSF 150

[Close]

BLAST of IVF0024493 vs. ExPASy TrEMBL
Match: A0A5D3BG26 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002250 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 108/151 (71.52%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFIL----LVIAILCGKRSTKS 60
           MSSPI LP LLPLPPSPLPPLHSPIVLPRSIEDLLMLSMF+L    LVIAILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFLLLVLILVIAILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSL-------------------WQKCRKMKTCGHVFHKDCIDRW 120
           DE+E L +NL+IQA IF                      +KCRKMKTCGH FHKDCIDRW
Sbjct: 61  DEKE-LSKNLNIQAPIFHYGIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 129
           FTVELHCPLCRTS CVVVDRSEN M S  SF
Sbjct: 121 FTVELHCPLCRTSGCVVVDRSENVMASSSSF 150

[Close]

BLAST of IVF0024493 vs. ExPASy TrEMBL
Match: A0A1S3C741 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497233 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.8e-46
Identity = 108/151 (71.52%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFIL----LVIAILCGKRSTKS 60
           MSSPI LP LLPLPPSPLPPLHSPIVLPRSIEDLLMLSMF+L    LVIAILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFLLLVLILVIAILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSL-------------------WQKCRKMKTCGHVFHKDCIDRW 120
           DE+E L +NL+IQA IF                      +KCRKMKTCGH FHKDCIDRW
Sbjct: 61  DEKE-LSKNLNIQAPIFHYGIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 129
           FTVELHCPLCRTS CVVVDRSEN M S  SF
Sbjct: 121 FTVELHCPLCRTSGCVVVDRSENVMASSSSF 150

[Close]

BLAST of IVF0024493 vs. NCBI nr
Match: XP_008457566.1 (PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo] >TYJ97404.1 RING-H2 finger protein ATL64-like [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 6.19e-60
Identity = 107/151 (70.86%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFILLV----IAILCGKRSTKS 60
           MSSPI LP LLPLPPSP+PPLHSPIVLPRSIEDLLMLSM +LLV    I ILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPPSPVPPLHSPIVLPRSIEDLLMLSMLLLLVLILVITILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSL-------------------WQKCRKMKTCGHVFHKDCIDRW 120
           DEEE L +N+DIQA IF                      +KCRK+KTCGHVFHKDCIDRW
Sbjct: 61  DEEESLSKNIDIQAPIFHYSVDGDIEQECAICLCEIEEGEKCRKIKTCGHVFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 128
           FTVELHCPLCRTSVCVVVD SENAM S  SF
Sbjct: 121 FTVELHCPLCRTSVCVVVDCSENAMASSSSF 151

[Close]

BLAST of IVF0024493 vs. NCBI nr
Match: KAA0067740.1 (RING-H2 finger protein ATL63-like [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (484), Expect = 1.21e-59
Identity = 109/151 (72.19%), Postives = 114/151 (75.50%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFILLV----IAILCGKRSTKS 60
           MSSPI LP LLPLP SPLPPLHSPI+LPRSIEDLLMLSMF+LLV    IAILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPLSPLPPLHSPIILPRSIEDLLMLSMFLLLVLILVIAILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSLW-------------------QKCRKMKTCGHVFHKDCIDRW 120
           DE+EL  +NLDIQASIF                      +KCRKMKTCGHVFHKDCIDRW
Sbjct: 61  DEKEL-SKNLDIQASIFHYGIDGDDKQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 128
           FTVELHCPLCRT VCVVVDRSEN M S  SF
Sbjct: 121 FTVELHCPLCRTLVCVVVDRSENVMASSSSF 150

[Close]

BLAST of IVF0024493 vs. NCBI nr
Match: XP_008457567.1 (PREDICTED: RING-H2 finger protein ATL63-like [Cucumis melo] >TYJ97405.1 RING-H2 finger protein ATL63-like [Cucumis melo var. makuwa])

HSP 1 Score: 189 bits (480), Expect = 4.91e-59
Identity = 108/151 (71.52%), Postives = 113/151 (74.83%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFILLV----IAILCGKRSTKS 60
           MSSPI LP LLPLPPSPLPPLHSPIVLPRSIEDLLMLSMF+LLV    IAILCGKRS KS
Sbjct: 1   MSSPILLPFLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFLLLVLILVIAILCGKRSAKS 60

Query: 61  DEEELLLENLDIQASIFSLW-------------------QKCRKMKTCGHVFHKDCIDRW 120
           DE+EL  +NL+IQA IF                      +KCRKMKTCGH FHKDCIDRW
Sbjct: 61  DEKEL-SKNLNIQAPIFHYGIDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 128
           FTVELHCPLCRTS CVVVDRSEN M S  SF
Sbjct: 121 FTVELHCPLCRTSGCVVVDRSENVMASSSSF 150

[Close]

BLAST of IVF0024493 vs. NCBI nr
Match: KAA0067739.1 (RING-H2 finger protein ATL64-like [Cucumis melo var. makuwa])

HSP 1 Score: 188 bits (477), Expect = 1.41e-58
Identity = 107/151 (70.86%), Postives = 112/151 (74.17%), Query Frame = 0


Query: 1   MSSPIFLPPLLPLPPSPLPPLHSPIVLPRSIEDLLMLSMFIL----LVIAILCGKRSTKS 60
           MSSPI LP LLPLPPSPLPPLHS IVLPRSIEDLLMLSM +L    LVIAILCG+R  KS
Sbjct: 1   MSSPILLPSLLPLPPSPLPPLHSSIVLPRSIEDLLMLSMVLLFVLLLVIAILCGRRFAKS 60

Query: 61  DEEELLLENLDIQASIFSLW-------------------QKCRKMKTCGHVFHKDCIDRW 120
           DEEEL  +NLDIQAS+F                      +KCRKMKTCGH FHKDCIDRW
Sbjct: 61  DEEEL-SKNLDIQASVFHYGVDGDDEQECAICLCEIEEGEKCRKMKTCGHAFHKDCIDRW 120

Query: 121 FTVELHCPLCRTSVCVVVDRSENAMTSLHSF 128
           FTVELHCPLCRTSVCVVVDRSENAM    SF
Sbjct: 121 FTVELHCPLCRTSVCVVVDRSENAMAFSSSF 150

[Close]

BLAST of IVF0024493 vs. NCBI nr
Match: XP_011659858.1 (E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus])

HSP 1 Score: 140 bits (352), Expect = 1.19e-39
Identity = 84/141 (59.57%), Postives = 92/141 (65.25%), Query Frame = 0


Query: 11  LPLPPSPLPPLHSPIVLPRSIEDLLMLSMFILLV----IAILCGKRSTKSDEEELLLENL 70
           +PL PSPLPPLHSPI+LP     LL +SM +L+V    IAILC KRS KSD EEL  ENL
Sbjct: 1   MPLSPSPLPPLHSPILLPGFFMVLLTISMLLLIVLFLFIAILCTKRSAKSDREEL-SENL 60

Query: 71  DIQASIFSL-------------------WQKCRKMKTCGHVFHKDCIDRWFTVELHCPLC 127
           DI+A IF                      +KCRKMKTCGHVFHKDCIDRWF V  HCP+C
Sbjct: 61  DIEAPIFHYNEVEGGEQECAICLCEIEEGEKCRKMKTCGHVFHKDCIDRWFKVNGHCPIC 120

[Close]

BLAST of IVF0024493 vs. TAIR 10
Match: AT5G58580.1 (TOXICOS EN LEVADURA 63 )

HSP 1 Score: 55.5 bits (132), Expect = 3.8e-08
Identity = 25/73 (34.25%), Postives = 39/73 (53.42%), Query Frame = 0


Query: 55  KSDEEELLLENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSVCVV 114
           +++EEE   E   I   ++      RK++ CGH FH +CID W +    CPLCR+ V   
Sbjct: 127 ENEEEEDEEEECVICLGLWEAGDFGRKLRNCGHGFHVECIDMWLSSHSTCPLCRSPVLAA 186

Query: 115 VDRSENAMTSLHS 128
           V   EN   ++++
Sbjct: 187 VSDEENLKLAVNA 199

[Close]

BLAST of IVF0024493 vs. TAIR 10
Match: AT3G62690.1 (AtL5 )

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-07
Identity = 23/49 (46.94%), Postives = 26/49 (53.06%), Query Frame = 0


Query: 63  LENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSV 112
           LE   +  S F    + R +  CGHVFH DCID WF     CPLCR  V
Sbjct: 110 LEECSVCLSEFEEDDEGRVLPKCGHVFHVDCIDTWFRSRSSCPLCRAPV 158

[Close]

BLAST of IVF0024493 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 4.2e-07
Identity = 23/55 (41.82%), Postives = 30/55 (54.55%), Query Frame = 0


Query: 57  DEEELLLENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSV 112
           +EEE   +   +  S F   +K R +  C H+FH DCID W     +CPLCRT V
Sbjct: 129 EEEEKRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of IVF0024493 vs. TAIR 10
Match: AT3G11110.1 (RING/U-box superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 5.4e-07
Identity = 22/67 (32.84%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 47  ILCGKRSTKSDEEELLLENLDIQASIFSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPL 106
           +LC +   + +EE    +   I    F   +K + +  C H +H +C+DRW   E  CPL
Sbjct: 92  VLCRRERAEEEEE----KECCICLGGFEEGEKMKVLPPCSHCYHCECVDRWLKTESSCPL 151

Query: 107 CRTSVCV 114
           CR S+ V
Sbjct: 152 CRVSIRV 154

[Close]

BLAST of IVF0024493 vs. TAIR 10
Match: AT4G10160.1 (RING/U-box superfamily protein )

HSP 1 Score: 51.6 bits (122), Expect = 5.4e-07
Identity = 21/49 (42.86%), Postives = 29/49 (59.18%), Query Frame = 0


Query: 67  DIQASI----FSLWQKCRKMKTCGHVFHKDCIDRWFTVELHCPLCRTSV 112
           D Q S+    +   +K ++M +CGH FH +CID W T    CPLCR S+
Sbjct: 94  DTQCSVCLGDYQAEEKLQQMPSCGHTFHMECIDLWLTSHTTCPLCRLSL 142

The following BLAST results are available for this feature:

BLAST of IVF0024493 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUZ9	5.3e-07	34.25	RING-H2 finger protein ATL63 OS=Arabidopsis thaliana OX=3702 GN=ATL63 PE=2 SV=1	[more]
Q9LSW9	5.8e-06	41.82	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q9LZJ6	5.8e-06	46.94	RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1	[more]
Q9SN27	7.6e-06	42.86	E3 ubiquitin-protein ligase ATL59 OS=Arabidopsis thaliana OX=3702 GN=ATL59 PE=1 ...	[more]
Q9SRM0	7.6e-06	32.84	RING-H2 finger protein ATL66 OS=Arabidopsis thaliana OX=3702 GN=ATL66 PE=2 SV=1	[more]

BLAST of IVF0024493 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BEE2	1.6e-46	70.86	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C6H2	1.6e-46	70.86	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497232 PE=3 ...	[more]
A0A5A7VKL1	2.7e-46	72.19	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3BG26	7.8e-46	71.52	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C741	7.8e-46	71.52	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103497233 PE=3 ...	[more]

BLAST of IVF0024493 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457566.1	6.19e-60	70.86	PREDICTED: RING-H2 finger protein ATL64-like [Cucumis melo] >TYJ97404.1 RING-H2 ...	[more]
KAA0067740.1	1.21e-59	72.19	RING-H2 finger protein ATL63-like [Cucumis melo var. makuwa]	[more]
XP_008457567.1	4.91e-59	71.52	PREDICTED: RING-H2 finger protein ATL63-like [Cucumis melo] >TYJ97405.1 RING-H2 ...	[more]
KAA0067739.1	1.41e-58	70.86	RING-H2 finger protein ATL64-like [Cucumis melo var. makuwa]	[more]
XP_011659858.1	1.19e-39	59.57	E3 ubiquitin-protein ligase ATL9-like [Cucumis sativus]	[more]

BLAST of IVF0024493 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58580.1	3.8e-08	34.25	TOXICOS EN LEVADURA 63	[more]
AT3G62690.1	4.2e-07	46.94	AtL5	[more]
AT5G43420.1	4.2e-07	41.82	RING/U-box superfamily protein	[more]
AT3G11110.1	5.4e-07	32.84	RING/U-box superfamily protein	[more]
AT4G10160.1	5.4e-07	42.86	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 79..108 e-value: 1.5E-9 score: 38.0
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 53..113 e-value: 1.9E-12 score: 48.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 85..108 score: 9.671455
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 77..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024493.2	IVF0024493.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding