IVF0024461 (gene) Melon (IVF77) v1

Overview


Name	IVF0024461
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Retrotransposon protein
Location	chr12: 15740990 .. 15742008 (+)
RNA-Seq Expression	IVF0024461
Synteny	IVF0024461

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACATTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGGTTAGGGTATGGAATATAATTTAAACGTGACACAACGTTCACAATGTACTTTTACTTAACAATTTTTCAATTAGTACTCATACGTGATTTTTTTTGTGCCCGCAGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAATCATTCCCGTATTACGACGAACTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAAGTCAGCGAGACTTCGATGTAGAAGCTATACATCTGGCGCTCGACCAAACAAACGAGCAACTCAGGCAGATTGCGGAGTGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGATTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

mRNA sequence

ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACATTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAATCATTCCCGTATTACGACGAACTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAATGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGATTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Coding sequence (CDS)

ATGTCAACCTCAAATCGTGCCCCGAGACATGTTTGGACGAGGGAGGAGGAGGGGACTCTTGTGGAATGTTTAATGGAGCTAGTGTCAATGGGGGGATGGAAATCAGATAATGGTACATTCCGCCCAGGATACCTTGCGCAGTTGGTACGCATGATGGCGGAGAAACTACCTGGATGTCAGGTACGAGCAACAACTGTAATTGATTGTAGGATCAAGACACTGAAGCGAACGTTCCAGGCCATTGCCGAAATGCGGGGCCCAGCGTGCAGTGGCTTTGGGTGGAACGATGAAGAGAAATGTATCGTTGCGGAGAAGGAATTATTTGATAATTGGTCGCATCCTGCAGCGAAAGGACTCCTGAACAAATCATTCCCGTATTACGACGAACTTACATATGTATTTGGTCGCGATAGGGCGACCGGTCGGTTCGCTGAGACATTCGCGGACGTGGGGTCTAACGAGCCTGGTGGCGGATATGACAGATTTGATATGGGGATGGAAACGAGGACTTCCCGCCCGTGTACAGCCAGGGAGTTGACATCTCGCAGGACGATGTACGTGCATCTCGACCTTCTCGCGCTTCAGAGGGTAGGACCGGATCAAGTGGATCGAAGAGGAAGAGGGGAATGGCCAGCACGCAACCTTGCAAATGACAACCACGTGCGCACGGAATTTTTCCGCATATTGCGTGAGATGCCAGAACTTACGAGTTTGGATAGGGCGTTATTGCAAAGGCATCTTTTGTCTCGTATGGACGACCTTCGGGGTTTCGTACTCATGCCTGAGGATGAAAGGGAGGGATTCTGTAGAGTCCTCCTACGAGACATAGAGAGATAG

Protein sequence

MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGMETRTSRPCTARELTSRRTMYVHLDLLALQRVGPDQVDRRGRGEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVLLRDIER

Homology

[Close]

BLAST of IVF0024461 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.6e-131
Identity = 247/306 (80.72%), Postives = 252/306 (82.35%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG------------- 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -----METRTSRPCTARE-----LTSRRTMYVHLDL-LALQRVGPDQVDRRGR--GEWPA 240
                 + R SRP  A E       S+R      D  L    +  DQ + + R   EWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLREIAEWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 279
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of IVF0024461 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.6e-131
Identity = 247/306 (80.72%), Postives = 252/306 (82.35%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG------------- 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -----METRTSRPCTARE-----LTSRRTMYVHLDL-LALQRVGPDQVDRRGR--GEWPA 240
                 + R SRP  A E       S+R      D  L    +  DQ + + R   EWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 279
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of IVF0024461 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 478.0 bits (1229), Expect = 2.6e-131
Identity = 247/306 (80.72%), Postives = 252/306 (82.35%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG------------- 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -----METRTSRPCTARE-----LTSRRTMYVHLDL-LALQRVGPDQVDRRGR--GEWPA 240
                 + R SRP  A E       S+R      D  L    +  DQ + + R   EWPA
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLALDQTNEQLRQIAEWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 279
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of IVF0024461 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.9e-131
Identity = 246/306 (80.39%), Postives = 252/306 (82.35%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG------------- 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -----METRTSRPCTARE-----LTSRRTMYVHLDL-LALQRVGPDQVDRRGR--GEWPA 240
                 + R SRP  A +       S+R      D  L    V  DQ + + R   +WPA
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHVALDQTNEQLREIAQWPA 240

Query: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 279
           RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL
Sbjct: 241 RNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREGFCRVL 300

[Close]

BLAST of IVF0024461 vs. ExPASy TrEMBL
Match: A0A5D3BCN9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001070 PE=4 SV=1)

HSP 1 Score: 476.5 bits (1225), Expect = 7.7e-131
Identity = 247/311 (79.42%), Postives = 254/311 (81.67%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG------------- 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 -----METRTSRPCTA-----------RELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
                 + R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 279
            +WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0024461 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 474 bits (1219), Expect = 1.07e-166
Identity = 248/311 (79.74%), Postives = 254/311 (81.67%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGM------------ 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 ------ETRTSRPCTA-----------RELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
                 + R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0024461 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 474 bits (1219), Expect = 1.07e-166
Identity = 248/311 (79.74%), Postives = 254/311 (81.67%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGM------------ 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 ------ETRTSRPCTA-----------RELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
                 + R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0024461 vs. NCBI nr
Match: TYJ96194.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon protein [Cucumis melo var. makuwa] >TYJ97116.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01046.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK12167.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 473 bits (1216), Expect = 3.07e-166
Identity = 247/311 (79.42%), Postives = 254/311 (81.67%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGM------------ 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 ------ETRTSRPCTA-----------RELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
                 + R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLREI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            +WPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AQWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0024461 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 474 bits (1219), Expect = 4.19e-166
Identity = 248/311 (79.74%), Postives = 254/311 (81.67%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGM------------ 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVYSQG 180

Query: 181 ------ETRTSRPCTA-----------RELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
                 + R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

[Close]

BLAST of IVF0024461 vs. NCBI nr
Match: KAA0038975.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 472 bits (1215), Expect = 4.35e-166
Identity = 247/311 (79.42%), Postives = 254/311 (81.67%), Query Frame = 0


Query: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60
           MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKG 120
           VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW  SHPAAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKSFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGM------------ 180
           LLNK FPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMG             
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSPVYSQG 180

Query: 181 ------ETRTSRPCTA-----------RELTSRRTMYVHLDLLALQRVGPDQVDRRGR-- 240
                 + R SRP  A           R+  S+R   +    LAL     DQ + + R  
Sbjct: 181 VDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHLAL-----DQTNEQLRQI 240

Query: 241 GEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 278
            EWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG
Sbjct: 241 AEWPARNLANDNHVRTEFFRILREMPELTSLDRALLQRHLLSRMDDLRGFVLMPEDEREG 300

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BLAST of IVF0024461 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 62.0 bits (149), Expect = 8.7e-10
Identity = 43/141 (30.50%), Postives = 69/141 (48.94%), Query Frame = 0


Query: 12  WTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAE-KLPGCQVRATTVIDCR 71
           W+ EE   LV+ L+E ++   W+  NGT     L    + M E     C+ +       R
Sbjct: 17  WSPEETKLLVQLLVEGIN-NNWRDSNGTI--SKLTVETKFMPEINKEFCRSKNYNHYLSR 76

Query: 72  IKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKGLLNKSFPYYD 131
           +K LK  +Q+  +++    SGFGW+   K   A  E++ ++  +HP  K L   +F ++D
Sbjct: 77  MKYLKIQYQSCLDLQ-RFSSGFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFD 136

Query: 132 ELTYVFGRDRATGRFAETFAD 150
           EL  +FG   ATG+ A    D
Sbjct: 137 ELQIIFGEGVATGKNAIGLCD 153

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BLAST of IVF0024461 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06
Identity = 35/137 (25.55%), Postives = 65/137 (47.45%), Query Frame = 0


Query: 9   RHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQVRATTVID 68
           R  WT   +  L++ L+E V+ G       TF      ++V     K  G Q     V+ 
Sbjct: 324 RIFWTPPMDYHLIDLLVEQVNNGNRVGQ--TFITSAWNEMVTAFNAKF-GSQ-HNKDVLK 383

Query: 69  CRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW--SHPAAKGLLNKSFPY 128
            R K L+R +  I  +     +GF W+     ++A+ ++++ +  +HP A+    K+ P 
Sbjct: 384 NRYKHLRRLYNDIKFLLEQ--NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPS 443

Query: 129 YDELTYVFGRDRATGRF 144
           Y  L ++FG++ + GR+
Sbjct: 444 YPNLCFIFGKETSDGRY 454

The following BLAST results are available for this feature:

BLAST of IVF0024461 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024461 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRV1	2.6e-131	80.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	2.6e-131	80.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRU1	2.6e-131	80.72	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CWL2	5.9e-131	80.39	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BCN9	7.7e-131	79.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0024461 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033744.1	1.07e-166	79.74	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]
TYK21395.1	1.07e-166	79.74	retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p...	[more]
TYJ96194.1	3.07e-166	79.42	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96764.1 retrotransposon p...	[more]
KAA0032766.1	4.19e-166	79.74	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038975.1	4.35e-166	79.42	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0024461 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27260.1	8.7e-10	30.50	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT2G24960.2	1.5e-06	25.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 12..110 e-value: 1.7E-7 score: 32.1
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 2..150
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 2..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024461.2	IVF0024461.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane