IVF0024442 (gene) Melon (IVF77) v1

Overview


Name	IVF0024442
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	40S ribosomal protein S29-like
Location	chr07: 1926138 .. 1927470 (-)
RNA-Seq Expression	IVF0024442
Synteny	IVF0024442

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTGTATCTTTTTTCAAGGGCTTAAACGGTGCGTTTCATGAGGCGGTTGGTTGGTAGCTACTGTATATAAACAGTGGAGCTGTCTAGGGCTTTGAAATTCTGCTAATTAGCGATTGAAAACGGTTTCTAAGGTGATCGGCCGACGAAGAAGACGATGGGACATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGCACTTGGTATACCTCCTCCGTCTTCAATTTTTCACCCAACTATATTCTCTTATTGACATTAGTTTTTGATTACAAACCATGTTCAACGCTGCTCTGTTCATATAATTTATAACTTATTGCCTCTGATTTCATGGCGATTCTTTTATTTGTTGGAACCTGGCATTCGATTATGATTCTCTTTGACCATTTAGATTGCATGGTCAAAGAGAACGCTGTTTTGAAGTTGACTACAACGCTGTTTTGCACAAAACATTTATCTTCATCCTAAAATCTGAGCGATTGTTCTTTGGCAGCCGTGTCTGTGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTTCGTAGTAATGCCAAAGAAATTGGCTTCATTAAGGTAAATTAAACTTCTTCTTCCCCACCCACTTACCACAATTTCATTTGCCCTTACTGTAACCTATTGGTTACAATTTTTCTGGTGCTGGTTTACAGTTTTCTATGAATAATTTTGATACAAAAGTAGATTGCATATACCCTTCGACAATTACTGCAATTAGGAAATCGTATATGAATTTCAATCGATTGCCTGTTTAAATGATTTATGATTATGCATTATATTCTGTCTTGCAGTACCGCTGAAAATGGAGCTATGATCTTCAAAGGTTGCAGATATGAGGATGTTGGTCATTTACTTCTTCTTCGCTTAGTCTATTGACATTTAAATGATTTCCGATCAATTACGATAAAAAGAATTATCAGTTGCACTTTAGAACCAACCAAGCTTGGGAATTACTTGGTTCTGAGTGGTTGAAAGAGTTTAGGAGAATTCTAAACACCCATATTTAAGTAATTTCAACTCAATTATTTGGATTATCTAAATTTGGTTATGAATTTTTATCCTGGTTAATTTGGTATTGTCCAAGGAAATGGGGGTAGGGCATGCCCCAATTAAAAATTGACGGGCAACAGCCTTTCCCCAAAAAGTTTTCAAGCTTAGCTATGAATGTAGTAGTGTCCTTGAAATATGTTAGTAAGTCGGGCCAGTTGAGTCTAAGTTTTAGTTTGTTGTGTAAGTTTGGAGTTTTGTCTTTGAATAATAGTTTCTAGAATTCTATATGAATGATGCCT

mRNA sequence

CTGTATCTTTTTTCAAGGGCTTAAACGGTGCGTTTCATGAGGCGGTTGGTTGGTAGCTACTGTATATAAACAGTGGAGCTGTCTAGGGCTTTGAAATTCTGCTAATTAGCGATTGAAAACGGTTTCTAAGGTGATCGGCCGACGAAGAAGACGATGGGACATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGCACTTGCCGTGTCTGTGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTTCGTAGTAATGCCAAAGAAATTGGCTTCATTAAGTACCGCTGAAAATGGAGCTATGATCTTCAAAGGTTGCAGATATGAGGATGTTGGTCATTTACTTCTTCTTCGCTTAGTCTATTGACATTTAAATGATTTCCGATCAATTACGATAAAAAGAATTATCAGTTGCACTTTAGAACCAACCAAGCTTGGGAATTACTTGGTTCTGAGTGGTTGAAAGAGTTTAGGAGAATTCTAAACACCCATATTTAAGTAATTTCAACTCAATTATTTGGATTATCTAAATTTGGTTATGAATTTTTATCCTGGTTAATTTGGTATTGTCCAAGGAAATGGGGGTAGGGCATGCCCCAATTAAAAATTGACGGGCAACAGCCTTTCCCCAAAAAGTTTTCAAGCTTAGCTATGAATGTAGTAGTGTCCTTGAAATATGTTAGTAAGTCGGGCCAGTTGAGTCTAAGTTTTAGTTTGTTGTGTAAGTTTGGAGTTTTGTCTTTGAATAATAGTTTCTAGAATTCTATATGAATGATGCCT

Coding sequence (CDS)

ATGGGACATTCAAACGTGTGGAATTCACATCCAAAGAACTATGGACCTGGTTCTCGCACTTGCCGTGTCTGTGGAAACCCCCATGGATTGATCCGCAAGTATGGCCTGATGTGCTGCAGGCAGTGCTTTCGTAGTAATGCCAAAGAAATTGGCTTCATTAAGTACCGCTGA

Protein sequence

MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR

Homology

[Close]

BLAST of IVF0024442 vs. ExPASy Swiss-Prot
Match: Q680P8 (40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 3.4e-27
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy Swiss-Prot
Match: Q5I7K3 (40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 5.9e-27
Identity = 51/56 (91.07%), Postives = 53/56 (94.64%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPKNYG GSR CRVCGN HGLIRKYGLMCCRQCFRS+AK+IGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGAGSRVCRVCGNSHGLIRKYGLMCCRQCFRSDAKDIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy Swiss-Prot
Match: Q7XYB0 (40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 2.4e-20
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGH N+W SHP+ YG GSR+C++CGN HGLIRKY +  CRQCFR  AK+IGFIKYR
Sbjct: 1  MGHQNIWYSHPRKYGKGSRSCKICGNKHGLIRKYSMNICRQCFREYAKDIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy Swiss-Prot
Match: Q4PM47 (40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.8e-18
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIK 55
          MGH N+W SHP+ YGPGSR CRVC N HGLIRKYGL  CR+CFR  A +IGF K
Sbjct: 1  MGHENIWYSHPRKYGPGSRYCRVCANHHGLIRKYGLNICRRCFRQYAADIGFKK 54

[Close]

BLAST of IVF0024442 vs. ExPASy Swiss-Prot
Match: Q757G1 (40S ribosomal protein S29 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=RPS29 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-18
Identity = 39/56 (69.64%), Postives = 42/56 (75.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          M H NVW SHP+NYG GSR CRVC +  GLIRKYGL  CRQCFR  A +IGF KYR
Sbjct: 1  MAHENVWFSHPRNYGKGSRQCRVCASHSGLIRKYGLNICRQCFREKANDIGFHKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy TrEMBL
Match: A0A1S3V2W1 (40S ribosomal protein S29 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771251 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy TrEMBL
Match: A0A2G9HKH9 (40S ribosomal protein S29 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06837 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy TrEMBL
Match: A0A6J5Y987 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50761 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy TrEMBL
Match: A0A1S3BZQ2 (40S ribosomal protein S29 OS=Cucumis melo OX=3656 GN=LOC103494802 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. ExPASy TrEMBL
Match: A0A2P5DND1 (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_048520 PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.4e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. NCBI nr
Match: XP_002271801.1 (PREDICTED: 40S ribosomal protein S29 [Vitis vinifera] >XP_002277856.1 PREDICTED: 40S ribosomal protein S29 [Vitis vinifera] >XP_002510113.1 40S ribosomal protein S29 [Ricinus communis] >XP_003517600.1 40S ribosomal protein S29 isoform X2 [Glycine max] >XP_003536587.1 40S ribosomal protein S29 [Glycine max] >XP_003537955.1 40S ribosomal protein S29 [Glycine max] >XP_003555985.1 40S ribosomal protein S29 [Glycine max] >XP_004136942.1 40S ribosomal protein S29 [Cucumis sativus] >XP_004141284.1 40S ribosomal protein S29 [Cucumis sativus] >XP_004152273.1 40S ribosomal protein S29 [Cucumis sativus] >XP_008236441.1 PREDICTED: 40S ribosomal protein S29 [Prunus mume] >XP_008366503.1 40S ribosomal protein S29 [Malus domestica] >XP_008373047.1 40S ribosomal protein S29 [Malus domestica] >XP_008452633.1 PREDICTED: 40S ribosomal protein S29 [Cucumis melo] >XP_008454386.1 PREDICTED: 40S ribosomal protein S29 [Cucumis melo] >XP_008455027.1 PREDICTED: 40S ribosomal protein S29 [Cucumis melo] >XP_009335389.1 PREDICTED: 40S ribosomal protein S29 [Pyrus x bretschneideri] >XP_009335391.1 PREDICTED: 40S ribosomal protein S29 [Pyrus x bretschneideri] >XP_009335395.1 PREDICTED: 40S ribosomal protein S29 [Pyrus x bretschneideri] >XP_009335396.1 PREDICTED: 40S ribosomal protein S29 [Pyrus x bretschneideri] >XP_012068241.1 40S ribosomal protein S29 [Jatropha curcas] >XP_014512686.1 40S ribosomal protein S29 [Vigna radiata var. radiata] >XP_014520214.1 40S ribosomal protein S29 [Vigna radiata var. radiata] >XP_015579872.1 40S ribosomal protein S29 [Ricinus communis] >XP_016177041.1 40S ribosomal protein S29 [Arachis ipaensis] >XP_017406681.1 PREDICTED: 40S ribosomal protein S29 [Vigna angularis] >XP_017413940.1 PREDICTED: 40S ribosomal protein S29 [Vigna angularis] >XP_020425405.1 40S ribosomal protein S29 [Prunus persica] >XP_021832790.1 40S ribosomal protein S29 [Prunus avium] >XP_022137207.1 40S ribosomal protein S29 [Momordica charantia] >XP_022148695.1 40S ribosomal protein S29 [Momordica charantia] >XP_022149134.1 40S ribosomal protein S29 [Momordica charantia] >XP_025620437.1 40S ribosomal protein S29 [Arachis hypogaea] >XP_025674414.1 40S ribosomal protein S29 [Arachis hypogaea] >XP_027913948.1 40S ribosomal protein S29 [Vigna unguiculata] >XP_027934884.1 40S ribosomal protein S29 [Vigna unguiculata] >XP_028181298.1 40S ribosomal protein S29 [Glycine soja] >XP_028183031.1 40S ribosomal protein S29 [Glycine soja] >XP_028188152.1 40S ribosomal protein S29 [Glycine soja] >XP_028220265.1 40S ribosomal protein S29 [Glycine soja] >XP_028767707.1 40S ribosomal protein S29 [Prosopis alba] >XP_028778046.1 40S ribosomal protein S29 [Prosopis alba] >XP_028778674.1 40S ribosomal protein S29 [Prosopis alba] >XP_028792178.1 40S ribosomal protein S29 [Prosopis alba] >XP_031274068.1 40S ribosomal protein S29-like [Pistacia vera] >XP_034228266.1 40S ribosomal protein S29 [Prunus dulcis] >XP_034695515.1 40S ribosomal protein S29-like [Vitis riparia] >XP_034699065.1 40S ribosomal protein S29-like [Vitis riparia] >XP_038888968.1 40S ribosomal protein S29 [Benincasa hispida] >XP_038905306.1 40S ribosomal protein S29 [Benincasa hispida] >KAA0044347.1 40S ribosomal protein S29-like [Cucumis melo var. makuwa] >KAB2636002.1 40S ribosomal protein S29-like [Pyrus ussuriensis x Pyrus communis] >KAG8632674.1 hypothetical protein MANES_18G044866v8 [Manihot esculenta] >OIW07926.1 hypothetical protein TanjilG_20027 [Lupinus angustifolius] >PIM99804.1 40S ribosomal protein S29 [Handroanthus impetiginosus] >PON54305.1 Ribosomal protein [Trema orientale] >PON66003.1 Ribosomal protein [Parasponia andersonii] >CAB4290660.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 130 bits (327), Expect = 2.66e-38
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. NCBI nr
Match: XP_011078121.1 (40S ribosomal protein S29 [Sesamum indicum] >XP_011088056.1 40S ribosomal protein S29 [Sesamum indicum] >XP_011092516.1 40S ribosomal protein S29 [Sesamum indicum] >XP_011093855.1 40S ribosomal protein S29 [Sesamum indicum])

HSP 1 Score: 130 bits (326), Expect = 3.78e-38
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
          MGHSN+WNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNIWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. NCBI nr
Match: XP_015866898.1 (40S ribosomal protein S29 [Ziziphus jujuba] >XP_015892836.1 40S ribosomal protein S29 [Ziziphus jujuba])

HSP 1 Score: 129 bits (325), Expect = 5.37e-38
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYG+MCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGIMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. NCBI nr
Match: XP_015866899.1 (40S ribosomal protein S29 [Ziziphus jujuba] >XP_015892835.1 40S ribosomal protein S29 [Ziziphus jujuba] >XP_024461959.1 40S ribosomal protein S29 [Populus trichocarpa] >XP_024463998.1 40S ribosomal protein S29 [Populus trichocarpa] >XP_034923293.1 40S ribosomal protein S29 [Populus alba] >PNT20416.1 hypothetical protein POPTR_009G090000 [Populus trichocarpa])

HSP 1 Score: 129 bits (325), Expect = 5.37e-38
Identity = 55/56 (98.21%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
          MGHSNVWNSHPKNYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. NCBI nr
Match: XP_024440496.1 (40S ribosomal protein S29 isoform X2 [Populus trichocarpa] >XP_024450640.1 40S ribosomal protein S29 [Populus trichocarpa] >XP_034897363.1 40S ribosomal protein S29-like [Populus alba] >ABK93131.1 unknown [Populus trichocarpa] >PNT49264.1 hypothetical protein POPTR_002G119600 [Populus trichocarpa] >RQO99591.1 hypothetical protein POPTR_014G017701 [Populus trichocarpa])

HSP 1 Score: 129 bits (324), Expect = 7.63e-38
Identity = 54/56 (96.43%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 56
          MGHSN+WNSHPKNYGPGSRTCRVCGNPHG+IRKYGLMCCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNIWNSHPKNYGPGSRTCRVCGNPHGIIRKYGLMCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. TAIR 10
Match: AT3G43980.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-28
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. TAIR 10
Match: AT3G44010.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-28
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

[Close]

BLAST of IVF0024442 vs. TAIR 10
Match: AT4G33865.1 (Ribosomal protein S14p/S29e family protein )

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-28
Identity = 52/56 (92.86%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 1  MGHSNVWNSHPKNYGPGSRTCRVCGNPHGLIRKYGLMCCRQCFRSNAKEIGFIKYR 57
          MGHSNVWNSHPK YGPGSR CRVCGN HGLIRKYGL CCRQCFRSNAKEIGFIKYR
Sbjct: 1  MGHSNVWNSHPKKYGPGSRLCRVCGNSHGLIRKYGLNCCRQCFRSNAKEIGFIKYR 56

The following BLAST results are available for this feature:

BLAST of IVF0024442 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q680P8	3.4e-27	92.86	40S ribosomal protein S29 OS=Arabidopsis thaliana OX=3702 GN=RPS29A PE=3 SV=2	[more]
Q5I7K3	5.9e-27	91.07	40S ribosomal protein S29 OS=Triticum aestivum OX=4565 GN=RPS29 PE=1 SV=1	[more]
Q7XYB0	2.4e-20	69.64	40S ribosomal protein S29 OS=Griffithsia japonica OX=83288 GN=RPS29 PE=3 SV=1	[more]
Q4PM47	3.8e-18	70.37	40S ribosomal protein S29 OS=Ixodes scapularis OX=6945 GN=RpS29 PE=3 SV=1	[more]
Q757G1	6.5e-18	69.64	40S ribosomal protein S29 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / F...	[more]

BLAST of IVF0024442 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3V2W1	9.4e-28	100.00	40S ribosomal protein S29 OS=Vigna radiata var. radiata OX=3916 GN=LOC106771251 ...	[more]
A0A2G9HKH9	9.4e-28	100.00	40S ribosomal protein S29 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06837...	[more]
A0A6J5Y987	9.4e-28	100.00	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS50761 PE=3 S...	[more]
A0A1S3BZQ2	9.4e-28	100.00	40S ribosomal protein S29 OS=Cucumis melo OX=3656 GN=LOC103494802 PE=3 SV=1	[more]
A0A2P5DND1	9.4e-28	100.00	Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_048520 PE=3 SV=...	[more]

BLAST of IVF0024442 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_002271801.1	2.66e-38	100.00	PREDICTED: 40S ribosomal protein S29 [Vitis vinifera] >XP_002277856.1 PREDICTED:...	[more]
XP_011078121.1	3.78e-38	98.21	40S ribosomal protein S29 [Sesamum indicum] >XP_011088056.1 40S ribosomal protei...	[more]
XP_015866898.1	5.37e-38	98.21	40S ribosomal protein S29 [Ziziphus jujuba] >XP_015892836.1 40S ribosomal protei...	[more]
XP_015866899.1	5.37e-38	98.21	40S ribosomal protein S29 [Ziziphus jujuba] >XP_015892835.1 40S ribosomal protei...	[more]
XP_024440496.1	7.63e-38	96.43	40S ribosomal protein S29 isoform X2 [Populus trichocarpa] >XP_024450640.1 40S r...	[more]

BLAST of IVF0024442 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G43980.1	2.4e-28	92.86	Ribosomal protein S14p/S29e family protein	[more]
AT3G44010.1	2.4e-28	92.86	Ribosomal protein S14p/S29e family protein	[more]
AT4G33865.1	2.4e-28	92.86	Ribosomal protein S14p/S29e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043140	Ribosomal protein S14/S29	GENE3D	4.10.830.10	30s Ribosomal Protein S14; Chain N	coord: 1..56 e-value: 1.0E-35 score: 123.4
IPR001209	Ribosomal protein S14	PFAM	PF00253	Ribosomal_S14	coord: 7..56 e-value: 2.9E-18 score: 65.4
IPR039744	40S ribosomal protein S29/30S ribosomal protein S14 type Z	PANTHER	PTHR12010	40S RIBOSOMAL PROTEIN S29	coord: 1..54
None	No IPR available	PANTHER	PTHR12010:SF14	40S RIBOSOMAL PROTEIN S29	coord: 1..54
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 13..49

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024442.2	IVF0024442.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008270	zinc ion binding