IVF0024385 (gene) Melon (IVF77) v1

Overview
NameIVF0024385
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRetrotransposon protein
Locationchr06: 20432564 .. 20432731 (-)
RNA-Seq ExpressionIVF0024385
SyntenyIVF0024385
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATTGTGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCTGAATCGATATTAACCGATTGGCAGTTGCGTAACGCTTAG

mRNA sequence

ATGACATATTGTGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCTGAATCGATATTAACCGATTGGCAGTTGCGTAACGCTTAG

Coding sequence (CDS)

ATGACATATTGTGAGGACGTTGACGACGTGGACGAGGGGGACTCCACGTACGCGACGACCACCGCTTCAGAAGACATTCAGTACATTGAGACAACAAACGAGTGGTCTCAGTGGCGCGACGACCTAGCTGAATCGATATTAACCGATTGGCAGTTGCGTAACGCTTAG

Protein sequence

MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA
Homology
BLAST of IVF0024385 vs. ExPASy TrEMBL
Match: A0A5A7SMG5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00160 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.8e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 56
           MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA
Sbjct: 233 MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 287

BLAST of IVF0024385 vs. ExPASy TrEMBL
Match: A0A5D3C0Q5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G00540 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.8e-23
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 56
           MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA
Sbjct: 229 MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 283

BLAST of IVF0024385 vs. ExPASy TrEMBL
Match: A0A5A7U3B3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold172G00460 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.2e-21
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 56
           MTYCEDVDDVDEGDSTYAT TASEDIQYIETTNEWSQWRDDLAES+ TDWQLRNA
Sbjct: 315 MTYCEDVDDVDEGDSTYATITASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNA 369

BLAST of IVF0024385 vs. ExPASy TrEMBL
Match: A0A5A7ST53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002720 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.9e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 56
           MTYCEDVDD DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAES+ TDWQLRN+
Sbjct: 281 MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 335

BLAST of IVF0024385 vs. ExPASy TrEMBL
Match: A0A5D3C4P9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9399G00010 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.9e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 56
           MTYCEDVDD DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAES+ TDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0024385 vs. NCBI nr
Match: TYK04752.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 5.10e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 55
           MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA
Sbjct: 229 MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 283

BLAST of IVF0024385 vs. NCBI nr
Match: KAA0025431.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 5.53e-29
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 55
           MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA
Sbjct: 233 MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 287

BLAST of IVF0024385 vs. NCBI nr
Match: TYK05336.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 1.52e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 55
           MTYCEDVDD DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAES+ TDWQLRN+
Sbjct: 53  MTYCEDVDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTDWQLRNS 107

BLAST of IVF0024385 vs. NCBI nr
Match: KAA0054051.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 103 bits (258), Expect = 8.54e-28
Identity = 48/55 (87.27%), Postives = 52/55 (94.55%), Query Frame = 0

Query: 1  MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 55
          MTYC+D+DDVDEGDS YATTTASEDI YIETTNEWSQWRD+LAES+ TDWQLRNA
Sbjct: 1  MTYCDDIDDVDEGDSAYATTTASEDIHYIETTNEWSQWRDELAESMFTDWQLRNA 55

BLAST of IVF0024385 vs. NCBI nr
Match: KAA0062284.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 105 bits (262), Expect = 8.81e-28
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 0

Query: 1   MTYCEDVDDVDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESILTDWQLRNA 55
           MTYC+D+DD DEGDSTYATTTASEDIQYIETTNEWSQWRDDLAES+ T+WQLRNA
Sbjct: 53  MTYCDDIDDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLAESMFTEWQLRNA 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SMG56.8e-23100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C0Q56.8e-23100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U3B32.2e-2194.55Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7ST534.9e-2192.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3C4P94.9e-2192.73Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK04752.15.10e-29100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025431.15.53e-29100.00retrotransposon protein [Cucumis melo var. makuwa][more]
TYK05336.11.52e-2892.73retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0054051.18.54e-2887.27retrotransposon protein [Cucumis melo var. makuwa] >TYJ96871.1 retrotransposon p... [more]
KAA0062284.18.81e-2889.09retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024385.1IVF0024385.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding