IVF0024367 (gene) Melon (IVF77) v1

Overview
NameIVF0024367
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionE3 ubiquitin-protein ligase SHPRH isoform X4
Locationchr09: 8986343 .. 8986555 (-)
RNA-Seq ExpressionIVF0024367
SyntenyIVF0024367
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCGGCGAAGGAGACACGACGATATTCCACTGCATTATGCCGAAGAAGATACGCAATAAAATTATGAAGCCTAGCAAGAACAACAAGAGGAAGATTGTTCAAGTGGCAATGAACAAGGGAATATTTGGAATTACAATGACAAAATACGAATGGGACGAGTTAATAGAAGGCAAGATGCATGAAGAGAAGTTCACCATGTTTATAAAATGA

mRNA sequence

ATGATCGGCGAAGGAGACACGACGATATTCCACTGCATTATGCCGAAGAAGATACGCAATAAAATTATGAAGCCTAGCAAGAACAACAAGAGGAAGATTGTTCAAGTGGCAATGAACAAGGGAATATTTGGAATTACAATGACAAAATACGAATGGGACGAGTTAATAGAAGGCAAGATGCATGAAGAGAAGTTCACCATGTTTATAAAATGA

Coding sequence (CDS)

ATGATCGGCGAAGGAGACACGACGATATTCCACTGCATTATGCCGAAGAAGATACGCAATAAAATTATGAAGCCTAGCAAGAACAACAAGAGGAAGATTGTTCAAGTGGCAATGAACAAGGGAATATTTGGAATTACAATGACAAAATACGAATGGGACGAGTTAATAGAAGGCAAGATGCATGAAGAGAAGTTCACCATGTTTATAAAATGA

Protein sequence

MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEEKFTMFIK
Homology
[Close]
BLAST of IVF0024367 vs. ExPASy TrEMBL
Match: A0A5A7U7S6 (E3 ubiquitin-protein ligase SHPRH isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004530 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 4   EGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEE 63
           EGD T+FH +M KKIR KIMK   N+K+  +QVAM+KGI GITMTK EWD+LIEGK HEE
Sbjct: 862 EGDPTMFHFVMLKKIRKKIMK--LNSKKTTLQVAMSKGISGITMTKCEWDKLIEGKKHEE 919

[Close]
BLAST of IVF0024367 vs. ExPASy TrEMBL
Match: A0A5D3DJB8 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00510 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.2e-05
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 1   MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKM 60
           M  +G   +FHC   K I  K MK  +  K+ I +VAM+K   G TM  +EW +L+EGK 
Sbjct: 69  MTDKGGLMMFHCDNTKTILKKTMKFGRMGKKTIHEVAMSKETSGTTMMIFEWVKLMEGKK 128

Query: 61  HEEKF 66
           HEE +
Sbjct: 129 HEENY 133

[Close]
BLAST of IVF0024367 vs. NCBI nr
Match: KAA0051973.1 (E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 2.60e-15
Identity = 41/60 (68.33%), Postives = 48/60 (80.00%), Query Frame = 0 

Query: 4   EGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKMHEE 63
           EGD T+FH +M KKIR KIMK   N+K+  +QVAM+KGI GITMTK EWD+LIEGK HEE
Sbjct: 862 EGDPTMFHFVMLKKIRKKIMK--LNSKKTTLQVAMSKGISGITMTKCEWDKLIEGKKHEE 919

[Close]
BLAST of IVF0024367 vs. NCBI nr
Match: KAA0040480.1 (hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK23480.1 hypothetical protein E5676_scaffold278G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 54.7 bits (130), Expect = 1.65e-06
Identity = 28/65 (43.08%), Postives = 38/65 (58.46%), Query Frame = 0 

Query: 1   MIGEGDTTIFHCIMPKKIRNKIMKPSKNNKRKIVQVAMNKGIFGITMTKYEWDELIEGKM 60
           M  +G   +FHC   K I  K MK  +  K+ I +VAM+K   G TM  +EW +L+EGK 
Sbjct: 69  MTDKGGLMMFHCDNTKTILKKTMKFGRMGKKTIHEVAMSKETSGTTMMIFEWVKLMEGKK 128

Query: 61  HEEKF 65
           HEE +
Sbjct: 129 HEENY 133

The following BLAST results are available for this feature:
BLAST of IVF0024367 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024367 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U7S61.8e-1268.33E3 ubiquitin-protein ligase SHPRH isoform X4 OS=Cucumis melo var. makuwa OX=1194... [more]
A0A5D3DJB88.2e-0543.08CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
BLAST of IVF0024367 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0051973.12.60e-1568.33E3 ubiquitin-protein ligase SHPRH isoform X4 [Cucumis melo var. makuwa][more]
KAA0040480.11.65e-0643.08hypothetical protein E6C27_scaffold262G00150 [Cucumis melo var. makuwa] >TYK2348... [more]
BLAST of IVF0024367 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024367.1IVF0024367.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding