IVF0024350 (gene) Melon (IVF77) v1

Overview


Name	IVF0024350
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	LYR motif-containing protein At3g19508
Location	chr06: 5051654 .. 5052225 (-)
RNA-Seq Expression	IVF0024350
Synteny	IVF0024350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACGGCGGCGAAATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGGTTTTAACTCTTGAATTCTCTGATCTTGAATTTGTTCGTTCGTTTGTTTGTTTTGTTTTCCATGTGTTTTAGAGGTTGTGGTGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGGGTGGGGGAAGAAGTGAATAGAATTCATTAGGGGTAGGGAAGTGGAGGATTATGGGTTCATAAAGAGAAAGTGAGGACGTAAATTGATCTGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGACTAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGTGGTGTCTCTATACTTCATGTTTCTAACTTTGTATCCATTTGTGGATCCACA

mRNA sequence

ACGGCGGCGAAATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGGGTGGGGGAAGAAGTGAATAGAATTCATTAGGGGTAGGGAAGTGGAGGATTATGGGTTCATAAAGAGAAAGTGAGGACGTAAATTGATCTGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGACTAAAGAAGAGAAGAGAAGAGAAGAGAAGAGAGGTGGTGTCTCTATACTTCATGTTTCTAACTTTGTATCCATTTGTGGATCCACA

Coding sequence (CDS)

ATGGAGAAGGCGCTGAGAGTATATGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCAAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAATCACTCCCTTTGGGTTCTGAACAAGTATTCGGTGGATGGATCTGCGGCGGATAAGCTGAAGGAGATCTGTTATAGTTAG

Protein sequence

MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNKYSVDGSAADKLKEICYS

Homology

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BLAST of IVF0024350 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-29
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of IVF0024350 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.5e-10
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 0


Query: 6  RVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNK 65
          + Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 7  QAYREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of IVF0024350 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of IVF0024350 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of IVF0024350 vs. ExPASy TrEMBL
Match: A0A0A0L970 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 4.3e-37
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of IVF0024350 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.1e-36
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of IVF0024350 vs. ExPASy TrEMBL
Match: A0A6P4A9N6 (LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427002 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.0e-35
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 83
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of IVF0024350 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 168 bits (425), Expect = 1.81e-52
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 82
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of IVF0024350 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida])

HSP 1 Score: 164 bits (414), Expect = 8.63e-51
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+YGEVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAY HSL
Sbjct: 1  MEKALRIYGEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYKHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 82
          WVLNKYSVDGSAADKLKEICYS
Sbjct: 61 WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of IVF0024350 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus])

HSP 1 Score: 161 bits (407), Expect = 1.01e-49
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALRVYGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1  MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 81
          WVLNKYSVDGSAADKLKEICY
Sbjct: 61 WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of IVF0024350 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 157 bits (397), Expect = 3.49e-48
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+Y EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1  MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 82
          WVLNKYSV+GSAADKLKEIC S
Sbjct: 61 WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of IVF0024350 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 156 bits (395), Expect = 6.85e-48
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          MEKALR+YGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1  MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 61 WVLNKYSVDGSAADKLKEICYS 82
          WVLNKYSVD SAADKLKE+CY+
Sbjct: 61 WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of IVF0024350 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 127.9 bits (320), Expect = 3.8e-30
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 1  MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60
          M+K LRVYG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1  MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 61 WVLNKYSVDGSAADKLKEICY 82
          WVL KYS+D SAA KLKEIC+
Sbjct: 61 WVLKKYSIDESAATKLKEICF 80

The following BLAST results are available for this feature:

BLAST of IVF0024350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3M2	5.4e-29	76.54	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
A9SNJ1	1.5e-10	53.33	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 G...	[more]

BLAST of IVF0024350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6G8	3.5e-39	100.00	LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C3W4	3.5e-39	100.00	LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P...	[more]
A0A0A0L970	4.3e-37	96.30	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1	[more]
A0A6J1FPX9	6.1e-36	92.68	LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6P4A9N6	1.0e-35	89.02	LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427...	[more]

BLAST of IVF0024350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456173.1	1.81e-52	100.00	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 L...	[more]
XP_038898400.1	8.63e-51	96.34	LYR motif-containing protein At3g19508 [Benincasa hispida]	[more]
XP_004140718.1	1.01e-49	96.30	LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetica...	[more]
XP_022941949.1	3.49e-48	92.68	LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ...	[more]
XP_015892821.1	6.85e-48	89.02	LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]

BLAST of IVF0024350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19508.1	3.8e-30	76.54	unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 4..56 e-value: 1.2E-5 score: 25.3
None	No IPR available	PANTHER	PTHR36758	OS01G0342800 PROTEIN	coord: 1..81
None	No IPR available	CDD	cd20269	Complex1_LYR_LYRM9	coord: 4..65 e-value: 9.76443E-23 score: 80.3639

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024350.1	IVF0024350.1	mRNA