IVF0024305 (gene) Melon (IVF77) v1

Overview


Name	IVF0024305
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Thioredoxin M3
Location	chr01: 401942 .. 404482 (-)
RNA-Seq Expression	IVF0024305
Synteny	IVF0024305

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAAATCTCCACTTCGGTTCCGTCAATCGCACTCTCCGGCTTCGCCCACTGAATTTTCCATCCATCTTCTTCGTCTTCCTCCTTATGCCATTTTCTATTTCGATTCTTCATTACTTCAACCTTCTTCTCTCTTAACCATGGCCGCCTCCATCTCTTTCTCTACTCCTCAAACTCATCCCCACCGCATTTCCCCTTACTCTAACCTCAATTCCCTTCGCCTTTTCTCTCCTCCTTCTAATCTCCGTATCAATCGCCGTCCTAATCCTCGAAATGCTTCTCTCACTCTCAACATCCAATGCATCAGTCAACCTAAAGGTTTTCTGCTTCTCTCTGCTTTTTCTATTACTTACTTTGCATGTTACACTCCCCGATTTGGTCTCTTTCTTTAATTTTCTACTGAAAAAACATGATTTACTATAGGTTTTACTACGTTCTAGATATTAGATCTTGATCTGTGCGATTTTGTATAATTAATGCGCTCTATGTATTGGAGGAATTTAGTTGCTGATGGAAATTTAAATGACTGAGCGAGATTGACTTTGTTTATATGTTACAAGATTGATTTTAATTGCGATCTTATCGTGTGATTTGCTTTGTTTGTTTACTGATGATTAAAGTAATGTTGGCATTGCATGTGTTAATTCGAGATCCATTCTTAAATTTGCGGTGTAAAGCTAGCTGGAATGATGTATATTATTCCTGAAATAGAAGAATTTCGAGATCTGTTTAATGTGTTAAGAAACATGCGTTAACTGTGTTAGTTATTTTCTAGGTAGTTTTAGGAGAACATTTGATTTTATTCCTCTTCTGTAGTGTTTCAATCTTTAAACGTTTTTGCCTGTTTTTGCCTTGGTGTTGTTCTGATGATTTTATCAAGAGGAAATCCGAGAAATGCTACTTTTGGATTAACTATTGGATTATTAGGGTTTTCAATCATATCATGGTGAATGGTTGAAGATTTGAGTAGAAAAAAGGCTTGGACTTGGACGACTATGTTTCATAGCAATATGTTGTCCATTATTTACACATAGAACTTCCCTTAGATCCAAGTTAAGAAAAATCTTGTTGCTGCTTAGTGCTTAGAAACAGCATTTGCATTTTCATATGTTGAGCTTGTCAAAGCATGGTAACTCCTTTCATCAACTTTCAAAAGTTAGTAATTTTTGGAGATCTTTCTCGCTTAGAGTTTGTTCTTTTTTTTTTTTTACGTCCATTTGAATTCCAAGTTTGTAGAGCAAATCTTTGTTCTTATCCGTTCTCATCTGTCAAGGAAGAGTGCCTTTTCTGACTTTCTATCCCATTTCTTGTTGAGATGATGGTACGTAGATTATTCTTGGTCAATTTTCATTCATTGTATTTTGTTTCATGTTCCCCATCATTTTAATTTATTACTGAACATAAGCTTTACCCAAGTGAACCTTTGTTTTAGAATGATGTTTTCCAGTTGATATTAGTTCTTCATCTATTTTCTTGTCCAAAGTATGCATGCTGTATACCATCTTTCAGAAAATAAACAATACACACACACACACACACACAATATCAATCTCTTATTTGTTTGAAAGGGAAGAAAAGTCTTAAGCTAATTTATTTTAGGAAACATTTGCCTGTGGAATTAGTATCTTGTATGAATAGATTATTATGACAGTCTTATATTTCTTGCATCAGTCATCCTTCCTCCCTGGTCAATGCCTTCTTTTTCTAGTAAATTATTCTTTAAAAGCGCTTAAACCAACCTCACTGCTTACTATGGAAATTACTAATTGATAGAGTATGTTCACCTATGGTATCATTATTAGATTATTCTCCTGTGACTCAACAACAACCTTAGTATTAAAAAAAATTATGCTCATTGGAGTCTAAAAAATCTAGACTTCGATCCCCAGAATGCCTTTCTAAATAATCTTGCTATTGTCATCCACAGCTGAGGTGGTTACTAAAGACTCATGGAACAAAATGATTCTAGAGAGCGGAACCCCTGTCCTGGTTGAATTTTATGCTAGTTGGTGTGGACCGTGTAGAATGGTGCATCGAGTCATTGATGAGTTAGCTGCTGAATATGAGGGGAAGCTGAAATGCTTTGTGCTCAACACCGACACTGATCTGCAAGTAGCTGAAGACTACGAAATTAAGGCTGTTCCTGTGGTTATGCTGTTCAAGAACGGGGAGAAATGTGATAGCGTCATCGGAACAATGCCAAAAGATTTCTATATTGCTGCCGTTGAAAGGGTCCTGAAGCAGTAGGAGACATGAGCAATCGAATCGGATATCTTTGGTAAGGTTGACCAGCTTGATTGTGCGAGTTGGTTGGCCATTTTGTTGCTAAAGCTTTCCACTGGGTTACTAGTTATTGAGGTGTATATAATAAATATAGCTTTTTAATCCCAAGTTTCTTACTTAGTTGGAATGGATTGTATAGCCCTCATTGTTGTGTTGTCTTTTCGTTGAAGTTGTTATAAAACATTGCTTCATTGCATTCCACACTTCACTTCTAATGGCTTTTTGGCGAAGATTATTCAGAAGTCATGAACCATTTTCT

mRNA sequence

CTTCAAATCTCCACTTCGGTTCCGTCAATCGCACTCTCCGGCTTCGCCCACTGAATTTTCCATCCATCTTCTTCGTCTTCCTCCTTATGCCATTTTCTATTTCGATTCTTCATTACTTCAACCTTCTTCTCTCTTAACCATGGCCGCCTCCATCTCTTTCTCTACTCCTCAAACTCATCCCCACCGCATTTCCCCTTACTCTAACCTCAATTCCCTTCGCCTTTTCTCTCCTCCTTCTAATCTCCGTATCAATCGCCGTCCTAATCCTCGAAATGCTTCTCTCACTCTCAACATCCAATGCATCAGTCAACCTAAAGCTGAGGTGGTTACTAAAGACTCATGGAACAAAATGATTCTAGAGAGCGGAACCCCTGTCCTGGTTGAATTTTATGCTAGTTGGTGTGGACCGTGTAGAATGGTGCATCGAGTCATTGATGAGTTAGCTGCTGAATATGAGGGGAAGCTGAAATGCTTTGTGCTCAACACCGACACTGATCTGCAAGTAGCTGAAGACTACGAAATTAAGGCTGTTCCTGTGGTTATGCTGTTCAAGAACGGGGAGAAATGTGATAGCGTCATCGGAACAATGCCAAAAGATTTCTATATTGCTGCCGTTGAAAGGGTCCTGAAGCAGTAGGAGACATGAGCAATCGAATCGGATATCTTTGGTAAGGTTGACCAGCTTGATTGTGCGAGTTGGTTGGCCATTTTGTTGCTAAAGCTTTCCACTGGGTTACTAGTTATTGAGGTGTATATAATAAATATAGCTTTTTAATCCCAAGTTTCTTACTTAGTTGGAATGGATTGTATAGCCCTCATTGTTGTGTTGTCTTTTCGTTGAAGTTGTTATAAAACATTGCTTCATTGCATTCCACACTTCACTTCTAATGGCTTTTTGGCGAAGATTATTCAGAAGTCATGAACCATTTTCT

Coding sequence (CDS)

ATGGCCGCCTCCATCTCTTTCTCTACTCCTCAAACTCATCCCCACCGCATTTCCCCTTACTCTAACCTCAATTCCCTTCGCCTTTTCTCTCCTCCTTCTAATCTCCGTATCAATCGCCGTCCTAATCCTCGAAATGCTTCTCTCACTCTCAACATCCAATGCATCAGTCAACCTAAAGCTGAGGTGGTTACTAAAGACTCATGGAACAAAATGATTCTAGAGAGCGGAACCCCTGTCCTGGTTGAATTTTATGCTAGTTGGTGTGGACCGTGTAGAATGGTGCATCGAGTCATTGATGAGTTAGCTGCTGAATATGAGGGGAAGCTGAAATGCTTTGTGCTCAACACCGACACTGATCTGCAAGTAGCTGAAGACTACGAAATTAAGGCTGTTCCTGTGGTTATGCTGTTCAAGAACGGGGAGAAATGTGATAGCGTCATCGGAACAATGCCAAAAGATTTCTATATTGCTGCCGTTGAAAGGGTCCTGAAGCAGTAG

Protein sequence

MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKAEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ

Homology

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BLAST of IVF0024305 vs. ExPASy Swiss-Prot
Match: Q9SEU7 (Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=2 SV=2)

HSP 1 Score: 178.3 bits (451), Expect = 7.0e-44
Identity = 93/166 (56.02%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 2   AASISFSTPQTHPHR-ISPYSNLNSLRLFSPPSNLRINRRPNPRNAS---LTLNIQCISQ 61
           ++SI F+  + H  R IS  S L  +  FSP S LR + R +  ++S   L L+  C+  
Sbjct: 7   SSSICFNPTRFHTARHISSPSRLFPVTSFSPRS-LRFSDRRSLLSSSASRLRLSPLCVRD 66

Query: 62  PKAEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTD 121
            +A  VT+ SW   +L+S TPVLVEFY SWCGPCRMVHR+IDE+A +Y GKL C++LN D
Sbjct: 67  SRAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNAD 126

Query: 122 TDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVL 164
            DL VAE+YEIKAVPVV+LFKNGEK +S++GTMPK+FYI+A+ERVL
Sbjct: 127 NDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 171

[Close]

BLAST of IVF0024305 vs. ExPASy Swiss-Prot
Match: Q7XQQ2 (Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0430800 PE=2 SV=4)

HSP 1 Score: 137.1 bits (344), Expect = 1.8e-31
Identity = 57/111 (51.35%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 52  IQCISQPK-AEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLK 111
           + C   P+ A+ +T  SWN+ ++ S  PVL+EF+ASWCGPCRMVHR++DE+A EY G++K
Sbjct: 58  VSCAYSPRGAKTITACSWNEYVICSDIPVLIEFWASWCGPCRMVHRIVDEIAQEYAGRIK 117

Query: 112 CFVLNTDTDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVER 162
           C+ L+TD   QVA  Y I+ +P V+LFK+GEK  S+ GT+PK  Y+ A+E+
Sbjct: 118 CYKLDTDDYPQVATSYSIERIPTVLLFKDGEKTHSITGTLPKAVYVRAIEK 168

[Close]

BLAST of IVF0024305 vs. ExPASy Swiss-Prot
Match: Q7X8R5 (Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0530600 PE=2 SV=2)

HSP 1 Score: 128.6 bits (322), Expect = 6.3e-29
Identity = 66/167 (39.52%), Postives = 100/167 (59.88%), Query Frame = 0


Query: 3   ASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQ----CISQP 62
           AS S S       R  P S     +     S    NRR   R AS+   +Q     I  P
Sbjct: 17  ASASASASSARRLRAVPPSRGIRYQALRADSGFAGNRRGGGRGASVVCAVQGQDTSIQVP 76

Query: 63  KAEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDT 122
           +   VTK +W  +++ES  PVLV ++A+WCGPC+M+  V+ +L+ EYEGKLKC+ LNTD 
Sbjct: 77  E---VTKSTWQSLVMESELPVLVGYWATWCGPCKMIDPVVGKLSKEYEGKLKCYKLNTDE 136

Query: 123 DLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 166
           +  +A  Y ++++P +M+FKNGEK D+VIG +P+   IA++E+ +++
Sbjct: 137 NPDIASQYGVRSIPTMMIFKNGEKKDAVIGAVPESTLIASIEKFVER 180

[Close]

BLAST of IVF0024305 vs. ExPASy Swiss-Prot
Match: Q6H7E4 (Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0639900 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-27
Identity = 49/101 (48.51%), Postives = 77/101 (76.24%), Query Frame = 0


Query: 63  VTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDLQV 122
           VTK +W  +++ES  PVLVEF+ASWCGPC+M+  VI +L+ EYEGKL C+ LNTD +  +
Sbjct: 71  VTKSTWQSLVVESELPVLVEFWASWCGPCKMIDPVIGKLSKEYEGKLNCYKLNTDENPDI 130

Query: 123 AEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVL 164
           A  + I+++P +M+FKNGEK D+VIG +P+   ++++++ +
Sbjct: 131 ATQFGIRSIPTMMIFKNGEKKDAVIGAVPESTLVSSIDKYI 171

[Close]

BLAST of IVF0024305 vs. ExPASy Swiss-Prot
Match: P48384 (Thioredoxin M-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.6e-27
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 0


Query: 59  KAEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDT 118
           + +VV   SW+++++ S TPVLV+F+A WCGPCRM+  +IDELA EY GK+KC+ LNTD 
Sbjct: 68  EVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYKLNTDE 127

Query: 119 DLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVL 164
               A  Y I+++P V+ FKNGE+ DSVIG +PK      VE+ +
Sbjct: 128 SPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172

[Close]

BLAST of IVF0024305 vs. ExPASy TrEMBL
Match: A0A5D3C652 (Thioredoxin M3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00550 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA
Sbjct: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 166
           QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ
Sbjct: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of IVF0024305 vs. ExPASy TrEMBL
Match: A0A1S3C0H5 (thioredoxin M3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495242 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA
Sbjct: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 166
           QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ
Sbjct: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of IVF0024305 vs. ExPASy TrEMBL
Match: A0A0A0K2M6 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G073610 PE=4 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.2e-84
Identity = 156/165 (94.55%), Postives = 159/165 (96.36%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MAAS SFST QTHP RISPYSNLNSLRLFSPPSNL  NRR NPRNASLTLNIQCISQPKA
Sbjct: 1   MAASFSFSTSQTHPDRISPYSNLNSLRLFSPPSNLPFNRRLNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDE+AAEY+GKLKCFVLNTDTDL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDEIAAEYDGKLKCFVLNTDTDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 166
           Q+AEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of IVF0024305 vs. ExPASy TrEMBL
Match: A0A6J1EMB5 (thioredoxin M3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434657 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.4e-74
Identity = 139/165 (84.24%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MA+ + FS PQT P+RIS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQ KA
Sbjct: 23  MASYLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 82

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 83  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 142

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 166
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 143 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 187

[Close]

BLAST of IVF0024305 vs. ExPASy TrEMBL
Match: A0A6J1JEI0 (thioredoxin M3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486177 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 139/165 (84.24%), Postives = 152/165 (92.12%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MA+S+ FS  QT P+RIS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQ KA
Sbjct: 1   MASSLPFSVHQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 166
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of IVF0024305 vs. NCBI nr
Match: XP_008454954.1 (PREDICTED: thioredoxin M3, chloroplastic [Cucumis melo] >KAA0031302.1 thioredoxin M3 [Cucumis melo var. makuwa] >TYK06754.1 thioredoxin M3 [Cucumis melo var. makuwa])

HSP 1 Score: 335 bits (860), Expect = 3.73e-116
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA
Sbjct: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165
           QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ
Sbjct: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of IVF0024305 vs. NCBI nr
Match: XP_004136977.1 (thioredoxin M3, chloroplastic [Cucumis sativus] >KGN43925.1 hypothetical protein Csa_017328 [Cucumis sativus])

HSP 1 Score: 317 bits (812), Expect = 7.81e-109
Identity = 156/165 (94.55%), Postives = 159/165 (96.36%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MAAS SFST QTHP RISPYSNLNSLRLFSPPSNL  NRR NPRNASLTLNIQCISQPKA
Sbjct: 1   MAASFSFSTSQTHPDRISPYSNLNSLRLFSPPSNLPFNRRLNPRNASLTLNIQCISQPKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDE+AAEY+GKLKCFVLNTDTDL
Sbjct: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDEIAAEYDGKLKCFVLNTDTDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165
           Q+AEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165

[Close]

BLAST of IVF0024305 vs. NCBI nr
Match: XP_038887358.1 (thioredoxin M3, chloroplastic [Benincasa hispida])

HSP 1 Score: 311 bits (797), Expect = 1.51e-106
Identity = 152/165 (92.12%), Postives = 160/165 (96.97%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MAAS SFSTPQT P+RISP+SNLNSLRLFSPPS+LR+NRR  PRNASLTLN+QCISQPKA
Sbjct: 1   MAASFSFSTPQTLPNRISPHSNLNSLRLFSPPSSLRLNRRLKPRNASLTLNVQCISQPKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTKDSWNKMILESGT VLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTD+
Sbjct: 61  EVVTKDSWNKMILESGTTVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDM 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165
           Q+AEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of IVF0024305 vs. NCBI nr
Match: KAG6588665.1 (Thioredoxin M3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022451.1 Thioredoxin M3, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 288 bits (736), Expect = 3.02e-97
Identity = 140/165 (84.85%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MA+S+ FS PQT P+RIS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQ KA
Sbjct: 1   MASSLPFSVPQTLPNRISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQAKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of IVF0024305 vs. NCBI nr
Match: XP_023531830.1 (thioredoxin M3, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 288 bits (736), Expect = 3.02e-97
Identity = 140/165 (84.85%), Postives = 153/165 (92.73%), Query Frame = 0


Query: 1   MAASISFSTPQTHPHRISPYSNLNSLRLFSPPSNLRINRRPNPRNASLTLNIQCISQPKA 60
           MA+S+ FS PQT P+ IS +SNLNSL  FSPPSNLR++RR   RNASLTLN+QC+SQPKA
Sbjct: 1   MASSLPFSVPQTLPNCISSHSNLNSLCFFSPPSNLRLHRRIRARNASLTLNVQCVSQPKA 60

Query: 61  EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDL 120
           EVVTK+SWNKMILESG PVLVEFYASWCGPCRMVHRVIDELAA+YEGKLKCFVLNTD DL
Sbjct: 61  EVVTKESWNKMILESGIPVLVEFYASWCGPCRMVHRVIDELAADYEGKLKCFVLNTDKDL 120

Query: 121 QVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVLKQ 165
           Q+AEDYEIKAVPVVMLFKNGEKC+SVIGTMPKDFYIAA+ERVLKQ
Sbjct: 121 QIAEDYEIKAVPVVMLFKNGEKCESVIGTMPKDFYIAAIERVLKQ 165

[Close]

BLAST of IVF0024305 vs. TAIR 10
Match: AT2G15570.1 (Thioredoxin superfamily protein )

HSP 1 Score: 178.3 bits (451), Expect = 5.0e-45
Identity = 93/166 (56.02%), Postives = 121/166 (72.89%), Query Frame = 0


Query: 2   AASISFSTPQTHPHR-ISPYSNLNSLRLFSPPSNLRINRRPNPRNAS---LTLNIQCISQ 61
           ++SI F+  + H  R IS  S L  +  FSP S LR + R +  ++S   L L+  C+  
Sbjct: 7   SSSICFNPTRFHTARHISSPSRLFPVTSFSPRS-LRFSDRRSLLSSSASRLRLSPLCVRD 66

Query: 62  PKAEVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTD 121
            +A  VT+ SW   +L+S TPVLVEFY SWCGPCRMVHR+IDE+A +Y GKL C++LN D
Sbjct: 67  SRAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNAD 126

Query: 122 TDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVL 164
            DL VAE+YEIKAVPVV+LFKNGEK +S++GTMPK+FYI+A+ERVL
Sbjct: 127 NDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 171

[Close]

BLAST of IVF0024305 vs. TAIR 10
Match: AT2G15570.2 (Thioredoxin superfamily protein )

HSP 1 Score: 174.5 bits (441), Expect = 7.1e-44
Identity = 93/167 (55.69%), Postives = 121/167 (72.46%), Query Frame = 0


Query: 2   AASISFSTPQTHPHR-ISPYSNLNSLRLFSPPSNLRINRRPNPRNAS---LTLNIQCISQ 61
           ++SI F+  + H  R IS  S L  +  FSP S LR + R +  ++S   L L+  C+  
Sbjct: 7   SSSICFNPTRFHTARHISSPSRLFPVTSFSPRS-LRFSDRRSLLSSSASRLRLSPLCVRD 66

Query: 62  PKAEV-VTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNT 121
            +A   VT+ SW   +L+S TPVLVEFY SWCGPCRMVHR+IDE+A +Y GKL C++LN 
Sbjct: 67  SRAAAEVTQRSWEDSVLKSETPVLVEFYTSWCGPCRMVHRIIDEIAGDYAGKLNCYLLNA 126

Query: 122 DTDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVL 164
           D DL VAE+YEIKAVPVV+LFKNGEK +S++GTMPK+FYI+A+ERVL
Sbjct: 127 DNDLPVAEEYEIKAVPVVLLFKNGEKRESIMGTMPKEFYISAIERVL 172

[Close]

BLAST of IVF0024305 vs. TAIR 10
Match: AT3G15360.1 (thioredoxin M-type 4 )

HSP 1 Score: 121.3 bits (303), Expect = 7.2e-28
Identity = 69/174 (39.66%), Postives = 99/174 (56.90%), Query Frame = 0


Query: 1   MAASISFST--PQTHPHRISP-----YSNLNSLR-LFSPPSNLRINRRPN-PRNASLTLN 60
           +AAS+S S+  P     RISP     +  L S R L +  ++L  NRR    R   +   
Sbjct: 18  IAASVSSSSAAPSVSRRRISPARFLEFRGLKSSRSLVTQSASLGANRRTRIARGGRIACE 77

Query: 61  IQCISQPKAEV--VTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKL 120
            Q  +    EV  ++   W   +LES  PVLVEF+A WCGPCRM+H ++D+LA ++ GK 
Sbjct: 78  AQDTTAAAVEVPNLSDSEWQTKVLESDVPVLVEFWAPWCGPCRMIHPIVDQLAKDFAGKF 137

Query: 121 KCFVLNTDTDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVL 164
           K + +NTD     A  Y I++VP V++FK GEK DS+IG +P++     +ER L
Sbjct: 138 KFYKINTDESPNTANRYGIRSVPTVIIFKGGEKKDSIIGAVPRETLEKTIERFL 191

[Close]

BLAST of IVF0024305 vs. TAIR 10
Match: AT1G03680.1 (thioredoxin M-type 1 )

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-23
Identity = 45/125 (36.00%), Postives = 76/125 (60.80%), Query Frame = 0


Query: 42  NPRNASLTLNIQCISQPKA---EVVTKDSWNKMILESGTPVLVEFYASWCGPCRMVHRVI 101
           N R + L   + C +Q  A    VV   +W+ ++L++  PV V+F+A WCGPC+M+  ++
Sbjct: 55  NSRVSRLRRGVICEAQDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIV 114

Query: 102 DELAAEYEGKLKCFVLNTDTDLQVAEDYEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAA 161
           +ELA +Y G+ K + LNTD        Y ++++P +M+F NGEK D++IG + KD    +
Sbjct: 115 NELAQKYAGQFKFYKLNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATS 174

Query: 162 VERVL 164
           + + L
Sbjct: 175 INKFL 179

[Close]

BLAST of IVF0024305 vs. TAIR 10
Match: AT4G03520.1 (Thioredoxin superfamily protein )

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-23
Identity = 52/158 (32.91%), Postives = 95/158 (60.13%), Query Frame = 0


Query: 21  SNLNSLRLFS--PPSN---LRINRRP-------NPRNASLTLNIQCISQPKA---EVVTK 80
           S+L+S R+F+  P S+   +R++  P        PR + L   + C +Q      +VV  
Sbjct: 28  SSLSSRRMFAVLPESSGLRIRLSLSPASLTSIHQPRVSRLRRAVVCEAQETTTDIQVVND 87

Query: 81  DSWNKMILESGTPVLVEFYASWCGPCRMVHRVIDELAAEYEGKLKCFVLNTDTDLQVAED 140
            +W+ ++L++  PV+V+F+A WCGPC+M+  ++++LA  Y GK+K + LNTD        
Sbjct: 88  STWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYKLNTDESPNTPGQ 147

Query: 141 YEIKAVPVVMLFKNGEKCDSVIGTMPKDFYIAAVERVL 164
           Y ++++P +M+F  GEK D++IG +PK    +++++ L
Sbjct: 148 YGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185

The following BLAST results are available for this feature:

BLAST of IVF0024305 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SEU7	7.0e-44	56.02	Thioredoxin M3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GAT1 PE=2 SV=2	[more]
Q7XQQ2	1.8e-31	51.35	Thioredoxin M3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0...	[more]
Q7X8R5	6.3e-29	39.52	Thioredoxin M2, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0...	[more]
Q6H7E4	1.2e-27	48.51	Thioredoxin M1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0...	[more]
P48384	1.6e-27	50.48	Thioredoxin M-type, chloroplastic OS=Pisum sativum OX=3888 PE=2 SV=1	[more]

BLAST of IVF0024305 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C652	1.1e-89	100.00	Thioredoxin M3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00550 ...	[more]
A0A1S3C0H5	1.1e-89	100.00	thioredoxin M3, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495242 PE=4 SV=1	[more]
A0A0A0K2M6	4.2e-84	94.55	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G073610...	[more]
A0A6J1EMB5	1.4e-74	84.24	thioredoxin M3, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111434657...	[more]
A0A6J1JEI0	3.0e-74	84.24	thioredoxin M3, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111486177 P...	[more]

BLAST of IVF0024305 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008454954.1	3.73e-116	100.00	PREDICTED: thioredoxin M3, chloroplastic [Cucumis melo] >KAA0031302.1 thioredoxi...	[more]
XP_004136977.1	7.81e-109	94.55	thioredoxin M3, chloroplastic [Cucumis sativus] >KGN43925.1 hypothetical protein...	[more]
XP_038887358.1	1.51e-106	92.12	thioredoxin M3, chloroplastic [Benincasa hispida]	[more]
KAG6588665.1	3.02e-97	84.85	Thioredoxin M3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >...	[more]
XP_023531830.1	3.02e-97	84.85	thioredoxin M3, chloroplastic-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of IVF0024305 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G15570.1	5.0e-45	56.02	Thioredoxin superfamily protein	[more]
AT2G15570.2	7.1e-44	55.69	Thioredoxin superfamily protein	[more]
AT3G15360.1	7.2e-28	39.66	thioredoxin M-type 4	[more]
AT1G03680.1	4.1e-23	36.00	thioredoxin M-type 1	[more]
AT4G03520.1	9.1e-23	32.91	Thioredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00421	THIOREDOXIN	coord: 127..138 score: 27.78 coord: 79..87 score: 61.79 coord: 87..96 score: 49.78
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 61..165 e-value: 1.4E-28 score: 101.0
None	No IPR available	PANTHER	PTHR45663	GEO12009P1	coord: 31..165
None	No IPR available	PANTHER	PTHR45663:SF21	THIOREDOXIN M3, CHLOROPLASTIC	coord: 31..165
None	No IPR available	CDD	cd02947	TRX_family	coord: 66..160 e-value: 5.11276E-30 score: 103.022
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 61..157 e-value: 3.4E-24 score: 84.8
IPR013766	Thioredoxin domain	PROSITE	PS51352	THIOREDOXIN_2	coord: 39..165 score: 12.819513
IPR005746	Thioredoxin	TIGRFAM	TIGR01068	TIGR01068	coord: 64..160 e-value: 1.1E-28 score: 97.3
IPR017937	Thioredoxin, conserved site	PROSITE	PS00194	THIOREDOXIN_1	coord: 80..98
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 53..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024305.1	IVF0024305.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0043085	positive regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0008047	enzyme activator activity
molecular_function	GO:0016671	oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
molecular_function	GO:0015035	protein-disulfide reductase activity