IVF0024278 (gene) Melon (IVF77) v1

Overview


Name	IVF0024278
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Ty3/gypsy retrotransposon protein
Location	chr01: 10893366 .. 10894068 (-)
RNA-Seq Expression	IVF0024278
Synteny	IVF0024278

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTTTGGAACGGAGGTAGACAAATCATATTGAAAGGAGATCCTTCCCTCATCAGGGCCGAATGTTCACTAAGGACATTGGAAAAGACATGGCAAGAGGATGATCAAGGATTTCTATTGGAATGGGCAAACATGGAAGTAGAAACTGAGGATACCTACAAGACTGATAAGAAAGAGAAAGGAGATGAAGCTGATATCCCTATGATTCGGTTCTTACTACAACAGTACACTGATATCTTTACCACACCAAAGGGTCTCCCTCCAAAGAGAGATATCGACCACAGGATCTTGACACTGCCCAACCAAAAGCCAATCAATGTAAGACCGTATAAATATGGACATATCCAAAAAGGGGAGATAGAGAAGTTAGTGGCTGAAATGCTGCAAGATGGTATCATCCGCCCAAGCCGAAGCCCATATTCCAACCCTGTTCTCCTGGTTAAAAATAAAGATGGGGGGTGACGGTTTTGTGTTGATTACCGACAGTTGAATCAAGCTACAGTCTCAGATAAGTTTCCTATCCTGGTGATTGAAGAACTATTGGATGAGCTATATGGAGCTGCGGTTTTCTCTAAACTGAACCTCAAATCGGGTTACCACCAAATTAGAATGAAGGAAGAAGATATAGAGAAGACAACGTTTCGCACCCATGAAGGCCATTATGAATTCCTAGTGATGCCTTTCGGTCTCACAAATGCAC

mRNA sequence

ATGAGCTTTTGGAACGGAGGTAGACAAATCATATTGAAAGGAGATCCTTCCCTCATCAGGGCCGAATGTTCACTAAGGACATTGGAAAAGACATGGCAAGAGGATGATCAAGGATTTCTATTGGAATGGGCAAACATGGAAGTAGAAACTGAGGATACCTACAAGACTGATAAGAAAGAGAAAGGAGATGAAGCTGATATCCCTATGATTCGGTTCTTACTACAACAGTACACTGATATCTTTACCACACCAAAGGGTCTCCCTCCAAAGAGAGATATCGACCACAGGATCTTGACACTGCCCAACCAAAAGCCAATCAATGTAAGACCGTATAAATATGGACATATCCAAAAAGGGGAGATAGAGAAGTTAGTGGCTGAAATGCTGCAAGATGGTATCATCCGCCCAAGCCGAAGCCCATATTCCAACCCTGTTCTCCTGGTTAAAAATAAAGATGGGGGGTGACGGTTTTGTGTTGATTACCGACAGTTGAATCAAGCTACAGTCTCAGATAAGTTTCCTATCCTGGTGATTGAAGAACTATTGGATGAGCTATATGGAGCTGCGGTTTTCTCTAAACTGAACCTCAAATCGGGTTACCACCAAATTAGAATGAAGGAAGAAGATATAGAGAAGACAACGTTTCGCACCCATGAAGGCCATTATGAATTCCTAGTGATGCCTTTCGGTCTCACAAATGCAC

Coding sequence (CDS)

ATGAGCTTTTGGAACGGAGGTAGACAAATCATATTGAAAGGAGATCCTTCCCTCATCAGGGCCGAATGTTCACTAAGGACATTGGAAAAGACATGGCAAGAGGATGATCAAGGATTTCTATTGGAATGGGCAAACATGGAAGTAGAAACTGAGGATACCTACAAGACTGATAAGAAAGAGAAAGGAGATGAAGCTGATATCCCTATGATTCGGTTCTTACTACAACAGTACACTGATATCTTTACCACACCAAAGGGTCTCCCTCCAAAGAGAGATATCGACCACAGGATCTTGACACTGCCCAACCAAAAGCCAATCAATGTAAGACCGTATAAATATGGACATATCCAAAAAGGGGAGATAGAGAAGTTAGTGGCTGAAATGCTGCAAGATGGTATCATCCGCCCAAGCCGAAGCCCATATTCCAACCCTGTTCTCCTGGTTAAAAATAAAGATGGGGGGTGA

Protein sequence

MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG

Homology

[Close]

BLAST of IVF0024278 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 32/84 (38.10%), Postives = 49/84 (58.33%), Query Frame = 0


Query: 69  MIRFLLQQYTDIFTTP-KGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGEIEKLVAE 128
           ++  LL ++  IF  P  G+  +  +   I T   Q PI  + Y Y    +GE+E+ + E
Sbjct: 87  ILNSLLGEFPRIFEPPLSGMSVETAVKAEIRT-NTQDPIYAKSYPYPVNMRGEVERQIDE 146

Query: 129 MLQDGIIRPSRSPYSNPVLLVKNK 152
           +LQDGIIRPS SPY++P+ +V  K
Sbjct: 147 LLQDGIIRPSNSPYNSPIWIVPKK 169

[Close]

BLAST of IVF0024278 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 52.4 bits (124), Expect = 5.4e-06
Identity = 34/112 (30.36%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 48  VETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKR------DIDHRILTLP 107
           +++ +   TD   K     +P+  +L Q+Y +I      LPP+        + H I   P
Sbjct: 537 IQSVEPNATDHSNKDTFCTLPV--WLQQKYREIIR--NDLPPRPADINNIPVKHDIEIKP 596

Query: 108 NQKPINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDG 154
             +   ++PY      + EI K+V ++L +  I PS+SP S+PV+LV  KDG
Sbjct: 597 GARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDG 644

[Close]

BLAST of IVF0024278 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 5.4e-06
Identity = 34/112 (30.36%), Postives = 56/112 (50.00%), Query Frame = 0


Query: 48  VETEDTYKTDKKEKGDEADIPMIRFLLQQYTDIFTTPKGLPPKR------DIDHRILTLP 107
           +++ +   TD   K     +P+  +L Q+Y +I      LPP+        + H I   P
Sbjct: 563 IQSVEPNATDHSNKDTFCTLPV--WLQQKYREIIR--NDLPPRPADINNIPVKHDIEIKP 622

Query: 108 NQKPINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDG 154
             +   ++PY      + EI K+V ++L +  I PS+SP S+PV+LV  KDG
Sbjct: 623 GARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDG 670

[Close]

BLAST of IVF0024278 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 6.0e-05
Identity = 24/79 (30.38%), Postives = 43/79 (54.43%), Query Frame = 0


Query: 73  LLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGEIEKLVAEMLQDG 132
           +  +Y DIF          ++  + L L + +P+  + Y+  H Q  EI+  V ++++D 
Sbjct: 282 ICSEYIDIFALESEPITVNNLYKQQLRLKDDEPVYTKNYRSPHSQVEEIQAQVQKLIKDK 341

Query: 133 IIRPSRSPYSNPVLLVKNK 152
           I+ PS S Y++P+LLV  K
Sbjct: 342 IVEPSVSQYNSPLLLVPKK 360

[Close]

BLAST of IVF0024278 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 8.6e-04
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 82  TTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGEIEKLVAEMLQDGIIRPSRSPY 141
           TT + LP    +   I T+ N+ P+  R Y         +   V ++L+DGIIRPSRSPY
Sbjct: 159 TTNEALPFNTAVTATIRTVDNE-PVYSRAYPTLMGVSDFVNNEVKQLLKDGIIRPSRSPY 218

Query: 142 SNPVLLVKNK 152
           ++P  +V  K
Sbjct: 219 NSPTWVVDKK 227

[Close]

BLAST of IVF0024278 vs. ExPASy TrEMBL
Match: A0A1S3BJT6 (uncharacterized protein LOC103490375 OS=Cucumis melo OX=3656 GN=LOC103490375 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.5e-83
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE
Sbjct: 435 MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 494

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQ  INVRPYKYGHIQKGE
Sbjct: 495 KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGE 554

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 155
           IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG
Sbjct: 555 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 588

[Close]

BLAST of IVF0024278 vs. ExPASy TrEMBL
Match: A0A5A7T8C0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00570 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 2.8e-82
Identity = 149/154 (96.75%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQE+DQGFLLEWANMEVETEDTYKTD+KE
Sbjct: 493 MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEEDQGFLLEWANMEVETEDTYKTDEKE 552

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           KGDEADIPMIRFLLQQYTDIFTTPK LPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE
Sbjct: 553 KGDEADIPMIRFLLQQYTDIFTTPKDLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 612

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 155
           IEKLVAEMLQDGIIRPSRSPYS+PVLLVK KDGG
Sbjct: 613 IEKLVAEMLQDGIIRPSRSPYSSPVLLVKKKDGG 646

[Close]

BLAST of IVF0024278 vs. ExPASy TrEMBL
Match: A0A5A7TH07 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00240 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.3e-81
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWN GRQIILKGDPSLI+AECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE
Sbjct: 299 MSFWNEGRQIILKGDPSLIKAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 358

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHR+LTLPNQ+PINV PYKYGHIQKGE
Sbjct: 359 KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRVLTLPNQRPINVTPYKYGHIQKGE 418

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 155
           IE LVAEMLQDGIIRPSRSPYS+PVLLVK KDGG
Sbjct: 419 IENLVAEMLQDGIIRPSRSPYSSPVLLVKKKDGG 452

[Close]

BLAST of IVF0024278 vs. ExPASy TrEMBL
Match: A0A5A7UYM1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002110 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 9.0e-81
Identity = 144/154 (93.51%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWNGGRQI+LKGDPSLIRAECSLRTLEKTWQE+DQGFLLEWANMEVET+DTYKTD+KE
Sbjct: 493 MSFWNGGRQIVLKGDPSLIRAECSLRTLEKTWQEEDQGFLLEWANMEVETDDTYKTDEKE 552

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           +GDEADIPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLP+QKPINVRPYKYGHIQKGE
Sbjct: 553 EGDEADIPMIRFLLQQYKDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGE 612

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 155
           IEKLVAEMLQDG+IRPSRSPYS+PVLLVK KDGG
Sbjct: 613 IEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGG 646

[Close]

BLAST of IVF0024278 vs. ExPASy TrEMBL
Match: A0A5A7UM77 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold80G002210 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 2.0e-80
Identity = 143/154 (92.86%), Postives = 153/154 (99.35%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWNGGRQI+LKGDPSLIRAECSLRTLEKTWQE+DQGFLLEWANM+VET+DTYKTD+KE
Sbjct: 493 MSFWNGGRQIVLKGDPSLIRAECSLRTLEKTWQEEDQGFLLEWANMKVETDDTYKTDEKE 552

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           +GDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLP+QKPINVRPYKYGHIQKGE
Sbjct: 553 EGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGE 612

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 155
           IEKLVAEMLQDG+IRPSRSPYS+PVLLVK K+GG
Sbjct: 613 IEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKNGG 646

[Close]

BLAST of IVF0024278 vs. NCBI nr
Match: KAA0040539.1 (uncharacterized protein E6C27_scaffold262G00930 [Cucumis melo var. makuwa] >TYK05581.1 uncharacterized protein E5676_scaffold98G00240 [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (782), Expect = 3.03e-100
Identity = 146/154 (94.81%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWN GRQIILKGDPSLI+AECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE
Sbjct: 299 MSFWNEGRQIILKGDPSLIKAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 358

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHR+LTLPNQ+PINV PYKYGHIQKGE
Sbjct: 359 KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRVLTLPNQRPINVTPYKYGHIQKGE 418

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 154
           IE LVAEMLQDGIIRPSRSPYS+PVLLVK KDGG
Sbjct: 419 IENLVAEMLQDGIIRPSRSPYSSPVLLVKKKDGG 452

[Close]

BLAST of IVF0024278 vs. NCBI nr
Match: XP_008448087.1 (PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo])

HSP 1 Score: 314 bits (804), Expect = 2.55e-97
Identity = 152/154 (98.70%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE
Sbjct: 435 MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 494

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQ  INVRPYKYGHIQKGE
Sbjct: 495 KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQNLINVRPYKYGHIQKGE 554

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 154
           IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG
Sbjct: 555 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 588

[Close]

BLAST of IVF0024278 vs. NCBI nr
Match: KAA0039128.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 310 bits (793), Expect = 1.40e-94
Identity = 149/154 (96.75%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQE+DQGFLLEWANMEVETEDTYKTD+KE
Sbjct: 493 MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEEDQGFLLEWANMEVETEDTYKTDEKE 552

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           KGDEADIPMIRFLLQQYTDIFTTPK LPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE
Sbjct: 553 KGDEADIPMIRFLLQQYTDIFTTPKDLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 612

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 154
           IEKLVAEMLQDGIIRPSRSPYS+PVLLVK KDGG
Sbjct: 613 IEKLVAEMLQDGIIRPSRSPYSSPVLLVKKKDGG 646

[Close]

BLAST of IVF0024278 vs. NCBI nr
Match: TYK14624.1 (uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa])

HSP 1 Score: 296 bits (757), Expect = 7.65e-93
Identity = 142/154 (92.21%), Postives = 147/154 (95.45%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWN GRQIILKGDP LI+AECSLRTLEKTWQEDDQGFLLEWANMEVE E+ YKTDKKE
Sbjct: 248 MSFWNEGRQIILKGDPFLIKAECSLRTLEKTWQEDDQGFLLEWANMEVEVEEIYKTDKKE 307

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQ+PINVRPYKYGH+QKGE
Sbjct: 308 KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQRPINVRPYKYGHVQKGE 367

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 154
           IE LVAEMLQDGIIRPSRSPYS+ VLLVK KDGG
Sbjct: 368 IENLVAEMLQDGIIRPSRSPYSSLVLLVKKKDGG 401

[Close]

BLAST of IVF0024278 vs. NCBI nr
Match: KAA0061073.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (780), Expect = 8.40e-93
Identity = 144/154 (93.51%), Postives = 152/154 (98.70%), Query Frame = 0


Query: 1   MSFWNGGRQIILKGDPSLIRAECSLRTLEKTWQEDDQGFLLEWANMEVETEDTYKTDKKE 60
           MSFWNGGRQI+LKGDPSLIRAECSLRTLEKTWQE+DQGFLLEWANMEVET+DTYKTD+KE
Sbjct: 493 MSFWNGGRQIVLKGDPSLIRAECSLRTLEKTWQEEDQGFLLEWANMEVETDDTYKTDEKE 552

Query: 61  KGDEADIPMIRFLLQQYTDIFTTPKGLPPKRDIDHRILTLPNQKPINVRPYKYGHIQKGE 120
           +GDEADIPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLP+QKPINVRPYKYGHIQKGE
Sbjct: 553 EGDEADIPMIRFLLQQYKDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGE 612

Query: 121 IEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 154
           IEKLVAEMLQDG+IRPSRSPYS+PVLLVK KDGG
Sbjct: 613 IEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGG 646

[Close]

BLAST of IVF0024278 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 46.2 bits (108), Expect = 2.7e-05
Identity = 20/39 (51.28%), Postives = 30/39 (76.92%), Query Frame = 0


Query: 116 IQKGEIEKLVAEMLQDGIIRPSRSPYSNPVLLVKNKDGG 155
           +++  ++  + EML+  II+PS SPYS+PVLLV+ KDGG
Sbjct: 40  LRRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGG 78

The following BLAST results are available for this feature:

BLAST of IVF0024278 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8I7P9	1.5e-08	38.10	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	5.4e-06	30.36	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	5.4e-06	30.36	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P10394	6.0e-05	30.38	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]
P10401	8.6e-04	37.14	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of IVF0024278 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJT6	1.5e-83	98.70	uncharacterized protein LOC103490375 OS=Cucumis melo OX=3656 GN=LOC103490375 PE=...	[more]
A0A5A7T8C0	2.8e-82	96.75	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TH07	5.3e-81	94.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UYM1	9.0e-81	93.51	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UM77	2.0e-80	92.86	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of IVF0024278 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040539.1	3.03e-100	94.81	uncharacterized protein E6C27_scaffold262G00930 [Cucumis melo var. makuwa] >TYK0...	[more]
XP_008448087.1	2.55e-97	98.70	PREDICTED: uncharacterized protein LOC103490375 [Cucumis melo]	[more]
KAA0039128.1	1.40e-94	96.75	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gyp...	[more]
TYK14624.1	7.65e-93	92.21	uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]	[more]
KAA0061073.1	8.40e-93	93.51	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0024278 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	2.7e-05	51.28	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 74..154 e-value: 1.0E-15 score: 59.8
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 48..153
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 48..153
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 74..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024278.1	IVF0024278.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity