IVF0024263 (gene) Melon (IVF77) v1

Overview
NameIVF0024263
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag-pro-like protein
Locationchr03: 1357275 .. 1357505 (-)
RNA-Seq ExpressionIVF0024263
SyntenyIVF0024263
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCAAAGATTCTCTTAGTAGGACAAATGAGCATGCAAGAAATCGAGGTCCATATGATTACTGATGATTCATCTAATAAGGAAACTTCAAATGATACCTCAATTACGGGTATCTCCGAGAATACTATTCCGCCTCATCTATTGGTTTATCAGTGTCCACCTGAATTTGAGTTGAACAATTGGCAAATCAAGAAGATGCTAAAAGTCACTAAGGGATCTCAAAAGTAA

mRNA sequence

ATGGATGCAAAGATTCTCTTAGTAGGACAAATGAGCATGCAAGAAATCGAGGTCCATATGATTACTGATGATTCATCTAATAAGGAAACTTCAAATGATACCTCAATTACGGGTATCTCCGAGAATACTATTCCGCCTCATCTATTGGTTTATCAGTGTCCACCTGAATTTGAGTTGAACAATTGGCAAATCAAGAAGATGCTAAAAGTCACTAAGGGATCTCAAAAGTAA

Coding sequence (CDS)

ATGGATGCAAAGATTCTCTTAGTAGGACAAATGAGCATGCAAGAAATCGAGGTCCATATGATTACTGATGATTCATCTAATAAGGAAACTTCAAATGATACCTCAATTACGGGTATCTCCGAGAATACTATTCCGCCTCATCTATTGGTTTATCAGTGTCCACCTGAATTTGAGTTGAACAATTGGCAAATCAAGAAGATGCTAAAAGTCACTAAGGGATCTCAAAAGTAA

Protein sequence

MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELNNWQIKKMLKVTKGSQK
Homology
[Close]
BLAST of IVF0024263 vs. ExPASy TrEMBL
Match: A0A5A7SV36 (Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00710 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.7e-25
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILLVGQMSMQEIEV +I D SSNKETSNDTSIT ISENTI P+ LVYQCPP+FELN
Sbjct: 140 MDAKILLVGQMSMQEIEVDIIIDASSNKETSNDTSITVISENTISPNPLVYQCPPKFELN 199

Query: 61  NWQIKKMLKVTKGSQK 77
           NW+IK MLKV+KGSQK
Sbjct: 200 NWEIKMMLKVSKGSQK 215

[Close]
BLAST of IVF0024263 vs. ExPASy TrEMBL
Match: A0A5A7V6U2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00120 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.5e-25
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILL+GQM MQEI+V++ITD SSNKETSNDTSI  ISENTIP H LVYQCPP+FELN
Sbjct: 232 MDAKILLIGQMGMQEIKVNIITDASSNKETSNDTSIVVISENTIPSHPLVYQCPPKFELN 291

Query: 61  NWQIKKMLKVTKGS 75
           NW+IKKMLKV+KGS
Sbjct: 292 NWKIKKMLKVSKGS 305

[Close]
BLAST of IVF0024263 vs. ExPASy TrEMBL
Match: A0A5D3D765 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00580 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 4.2e-23
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILLVGQM MQEIEV MI D SSNKETSNDTSIT I EN I  + LVYQCPP+FELN
Sbjct: 59  MDAKILLVGQMRMQEIEVDMIIDVSSNKETSNDTSITVIFENNISHNPLVYQCPPKFELN 118

Query: 61  NWQIKKMLKVTKGSQK 77
           NW+IK+MLKV+KGSQK
Sbjct: 119 NWEIKRMLKVSKGSQK 134

[Close]
BLAST of IVF0024263 vs. ExPASy TrEMBL
Match: A0A5A7U1T7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002100 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.5e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1  MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
          MD KILLVGQMSMQEI+V+MI D SSNK+TSNDT IT I ENTI PH L+YQC PEFE+N
Sbjct: 1  MDTKILLVGQMSMQEIKVNMIIDASSNKKTSNDTLITVIFENTILPHPLIYQCQPEFEMN 60

Query: 61 NWQIKKMLKVTKGSQK 77
          NW+IKK LKV+KGSQK
Sbjct: 61 NWEIKKTLKVSKGSQK 76

[Close]
BLAST of IVF0024263 vs. ExPASy TrEMBL
Match: A0A5A7SM74 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold253G00440 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.4e-23
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILLVGQ+SMQEIEV MI D    KETSNDTSIT ISENTI P+LLVYQCPP+FELN
Sbjct: 59  MDAKILLVGQVSMQEIEVDMIID----KETSNDTSITIISENTISPNLLVYQCPPKFELN 118

Query: 61  NWQIKKMLKVTKGSQK 77
           NW+IK+ LKV+KGSQK
Sbjct: 119 NWEIKRTLKVSKGSQK 130

[Close]
BLAST of IVF0024263 vs. NCBI nr
Match: KAA0034830.1 (Gag-pro-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (316), Expect = 1.02e-33
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILLVGQMSMQEIEV +I D SSNKETSNDTSIT ISENTI P+ LVYQCPP+FELN
Sbjct: 140 MDAKILLVGQMSMQEIEVDIIIDASSNKETSNDTSITVISENTISPNPLVYQCPPKFELN 199

Query: 61  NWQIKKMLKVTKGSQK 76
           NW+IK MLKV+KGSQK
Sbjct: 200 NWEIKMMLKVSKGSQK 215

[Close]
BLAST of IVF0024263 vs. NCBI nr
Match: KAA0063823.1 (uncharacterized protein E6C27_scaffold827G00420 [Cucumis melo var. makuwa] >TYK07301.1 uncharacterized protein E5676_scaffold202G00120 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (313), Expect = 6.71e-33
Identity = 61/74 (82.43%), Postives = 68/74 (91.89%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILL+GQM MQEI+V++ITD SSNKETSNDTSI  ISENTIP H LVYQCPP+FELN
Sbjct: 232 MDAKILLIGQMGMQEIKVNIITDASSNKETSNDTSIVVISENTIPSHPLVYQCPPKFELN 291

Query: 61  NWQIKKMLKVTKGS 74
           NW+IKKMLKV+KGS
Sbjct: 292 NWKIKKMLKVSKGS 305

[Close]
BLAST of IVF0024263 vs. NCBI nr
Match: TYK19418.1 (uncharacterized protein E5676_scaffold443G00580 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 2.19e-32
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILLVGQM MQEIEV MI D SSNKETSNDTSIT I EN I  + LVYQCPP+FELN
Sbjct: 59  MDAKILLVGQMRMQEIEVDMIIDVSSNKETSNDTSITVIFENNISHNPLVYQCPPKFELN 118

Query: 61  NWQIKKMLKVTKGSQK 76
           NW+IK+MLKV+KGSQK
Sbjct: 119 NWEIKRMLKVSKGSQK 134

[Close]
BLAST of IVF0024263 vs. NCBI nr
Match: KAA0025555.1 (uncharacterized protein E6C27_scaffold253G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (293), Expect = 7.93e-32
Identity = 61/76 (80.26%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 1   MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
           MDAKILLVGQ+SMQEIEV MI D    KETSNDTSIT ISENTI P+LLVYQCPP+FELN
Sbjct: 59  MDAKILLVGQVSMQEIEVDMIID----KETSNDTSITIISENTISPNLLVYQCPPKFELN 118

Query: 61  NWQIKKMLKVTKGSQK 76
           NW+IK+ LKV+KGSQK
Sbjct: 119 NWEIKRTLKVSKGSQK 130

[Close]
BLAST of IVF0024263 vs. NCBI nr
Match: KAA0048196.1 (uncharacterized protein E6C27_scaffold63G001070 [Cucumis melo var. makuwa] >TYK08062.1 uncharacterized protein E5676_scaffold265G002100 [Cucumis melo var. makuwa])

HSP 1 Score: 118 bits (296), Expect = 9.74e-32
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1  MDAKILLVGQMSMQEIEVHMITDDSSNKETSNDTSITGISENTIPPHLLVYQCPPEFELN 60
          MD KILLVGQMSMQEI+V+MI D SSNK+TSNDT IT I ENTI PH L+YQC PEFE+N
Sbjct: 1  MDTKILLVGQMSMQEIKVNMIIDASSNKKTSNDTLITVIFENTILPHPLIYQCQPEFEMN 60

Query: 61 NWQIKKMLKVTKGSQK 76
          NW+IKK LKV+KGSQK
Sbjct: 61 NWEIKKTLKVSKGSQK 76

The following BLAST results are available for this feature:
BLAST of IVF0024263 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024263 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SV362.7e-2584.21Gag-pro-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213... [more]
A0A5A7V6U24.5e-2582.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3D7654.2e-2380.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U1T75.5e-2377.63Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SM749.4e-2380.26Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of IVF0024263 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0034830.11.02e-3384.21Gag-pro-like protein [Cucumis melo var. makuwa][more]
KAA0063823.16.71e-3382.43uncharacterized protein E6C27_scaffold827G00420 [Cucumis melo var. makuwa] >TYK0... [more]
TYK19418.12.19e-3280.26uncharacterized protein E5676_scaffold443G00580 [Cucumis melo var. makuwa][more]
KAA0025555.17.93e-3280.26uncharacterized protein E6C27_scaffold253G00440 [Cucumis melo var. makuwa][more]
KAA0048196.19.74e-3277.63uncharacterized protein E6C27_scaffold63G001070 [Cucumis melo var. makuwa] >TYK0... [more]
BLAST of IVF0024263 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024263.1IVF0024263.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity