IVF0024245 (gene) Melon (IVF77) v1

Overview
NameIVF0024245
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionDNA repair protein UVH3 isoform X2
Locationchr09: 13037904 .. 13038128 (-)
RNA-Seq ExpressionIVF0024245
SyntenyIVF0024245
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGCTTCGTCAGACGACACACGGGGAGAAGAATGACGCGATGCTCAACGCTCGGCTTAGGCAAATGGTGGGTGGTCGTCGGTGCGGTGCATTCGGTGGCTGTCGACGAACGACTAGAACGCACGGTTGACTGCGGTGGGTGGTCGTCAAAGAAGAGGGGCTGACGACGACATTCGGTGGAGAAGTGAGGAGATGGGGTGAGGTGGCAGCAATTGGTTAA

mRNA sequence

ATGGCTGGGCTTCGTCAGACGACACACGGGGAGAAGAATGACGCGATGCTCAACGCTCGGCTTAGGCAAATGGTGGGTGGTCGTCGGTGCGGTGCATTCGGTGGCTGTCGACGAACGACTAGAACGCACGAGGGGCTGACGACGACATTCGGTGGAGAAGTGAGGAGATGGGGTGAGGTGGCAGCAATTGGTTAA

Coding sequence (CDS)

ATGGCTGGGCTTCGTCAGACGACACACGGGGAGAAGAATGACGCGATGCTCAACGCTCGGCTTAGGCAAATGGTGGGTGGTCGTCGGTGCGGTGCATTCGGTGGCTGTCGACGAACGACTAGAACGCACGAGGGGCTGACGACGACATTCGGTGGAGAAGTGAGGAGATGGGGTGAGGTGGCAGCAATTGGTTAA

Protein sequence

MAGLRQTTHGEKNDAMLNARLRQMVGGRRCGAFGGCRRTTRTHEGLTTTFGGEVRRWGEVAAIG
Homology
[Close]
BLAST of IVF0024245 vs. ExPASy TrEMBL
Match: A0A5A7TXE5 (DNA repair protein UVH3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold688G00420 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 2.3e-14
Identity = 45/58 (77.59%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 16 MLNARLRQMVGGRRCGAFGGCRRTTRTH----------EGLTTTFGGEVRRWGEVAAI 64
          ML+ARLRQMVGGRRCGAFGGCRRTTRTH          EGL  TFGGEVRRWGEVAAI
Sbjct: 1  MLDARLRQMVGGRRCGAFGGCRRTTRTHSLLRWVVVEDEGLMMTFGGEVRRWGEVAAI 58

[Close]
BLAST of IVF0024245 vs. NCBI nr
Match: KAA0048293.1 (DNA repair protein UVH3 isoform X2 [Cucumis melo var. makuwa] >TYK14175.1 DNA repair protein UVH3 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 85.5 bits (210), Expect = 1.62e-18
Identity = 45/58 (77.59%), Postives = 46/58 (79.31%), Query Frame = 0 

Query: 16 MLNARLRQMVGGRRCGAFGGCRRTTRTH----------EGLTTTFGGEVRRWGEVAAI 63
          ML+ARLRQMVGGRRCGAFGGCRRTTRTH          EGL  TFGGEVRRWGEVAAI
Sbjct: 1  MLDARLRQMVGGRRCGAFGGCRRTTRTHSLLRWVVVEDEGLMMTFGGEVRRWGEVAAI 58

The following BLAST results are available for this feature:
BLAST of IVF0024245 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0024245 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TXE52.3e-1477.59DNA repair protein UVH3 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56... [more]
BLAST of IVF0024245 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048293.11.62e-1877.59DNA repair protein UVH3 isoform X2 [Cucumis melo var. makuwa] >TYK14175.1 DNA re... [more]
BLAST of IVF0024245 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024245.1IVF0024245.1mRNA