IVF0024141 (gene) Melon (IVF77) v1

Overview


Name	IVF0024141
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	BTB/POZ domain-containing protein
Location	chr01: 9546978 .. 9547157 (-)
RNA-Seq Expression	IVF0024141
Synteny	IVF0024141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGAAAACAGAGGAAAATTCCTTTGGGTTGAAGAAGGAACAAAAGCGTGAAATGAAACAACTCACCCATACTTTGGGTGGTGCAAACCGATTAAAAAAGGAAGGGCGTGTAGATGGTGAAAAAGCGATGGAAGAGAAACCGACTGTGGAAAAGCGACAAAAGAGAAAGCGACGGTGA

mRNA sequence

ATGCAGAAAACAGAGGAAAATTCCTTTGGGTTGAAGAAGGAACAAAAGCGTGAAATGAAACAACTCACCCATACTTTGGGTGGTGCAAACCGATTAAAAAAGGAAGGGCGTGTAGATGGTGAAAAAGCGATGGAAGAGAAACCGACTGTGGAAAAGCGACAAAAGAGAAAGCGACGGTGA

Coding sequence (CDS)

ATGCAGAAAACAGAGGAAAATTCCTTTGGGTTGAAGAAGGAACAAAAGCGTGAAATGAAACAACTCACCCATACTTTGGGTGGTGCAAACCGATTAAAAAAGGAAGGGCGTGTAGATGGTGAAAAAGCGATGGAAGAGAAACCGACTGTGGAAAAGCGACAAAAGAGAAAGCGACGGTGA

Protein sequence

MQKTEENSFGLKKEQKREMKQLTHTLGGANRLKKEGRVDGEKAMEEKPTVEKRQKRKRR

Homology

[Close]

BLAST of IVF0024141 vs. ExPASy TrEMBL
Match: A0A5D3E6N5 (BTB/POZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008270 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 7.1e-10
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 0


Query: 11  LKKEQKREMKQLTHTLGGANRLKKEGRVDGEKAMEEKPTVEKRQKRKRR 60
           LK EQK E KQLTHTLGGANRLKKEGR DG KA +EKPTVEKR+KRKRR
Sbjct: 82  LKIEQKLETKQLTHTLGGANRLKKEGRADGGKATKEKPTVEKRRKRKRR 130

[Close]

BLAST of IVF0024141 vs. NCBI nr
Match: KAA0063265.1 (BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 6.28e-14
Identity = 42/52 (80.77%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 8   SFGLKKEQKREMKQLTHTLGGANRLKKEGRVDGEKAMEEKPTVEKRQKRKRR 59
           S  LK EQK E KQLTHTLGGANRLKKEGR DG KA +EKPTVEKR+KRKRR
Sbjct: 79  STRLKIEQKLETKQLTHTLGGANRLKKEGRADGGKATKEKPTVEKRRKRKRR 130

The following BLAST results are available for this feature:

BLAST of IVF0024141 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0024141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E6N5	7.1e-10	83.67	BTB/POZ domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of IVF0024141 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063265.1	6.28e-14	80.77	BTB/POZ domain-containing protein [Cucumis melo var. makuwa] >TYK31509.1 BTB/POZ...	[more]

BLAST of IVF0024141 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..52
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024141.1	IVF0024141.1	mRNA