IVF0024117 (gene) Melon (IVF77) v1

Overview


Name	IVF0024117
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	ATP synthase subunit c, chloroplastic
Location	tig00007088: 1257179 .. 1257337 (+)
RNA-Seq Expression	IVF0024117
Synteny	IVF0024117

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGA

mRNA sequence

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGA

Coding sequence (CDS)

ATGAATCCACTGATTTCTGCCGCTTCCGTTATTGCTGCTGGGTTGGCCGTCGGGCTTGCTTCTATTGGACCTGGGATTGGTCAAGGTACTGCTGCGGGCCAAGCTGTAGAAGGGATCGCGAGACAACCCGAGGCGGAGGGAAAAATCCGAGGTACTTGA

Protein sequence

MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT

Homology

[Close]

BLAST of IVF0024117 vs. ExPASy Swiss-Prot
Match: Q6WQW2 (ATP synthase subunit c, chloroplastic OS=Cucumis sativus OX=3659 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy Swiss-Prot
Match: P62481 (ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha OX=3197 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy Swiss-Prot
Match: B0Z4N0 (ATP synthase subunit c, chloroplastic OS=Oenothera argillicola OX=3940 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy Swiss-Prot
Match: B0Z4W4 (ATP synthase subunit c, chloroplastic OS=Oenothera biennis OX=3942 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy Swiss-Prot
Match: P62480 (ATP synthase subunit c, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.4e-19
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy TrEMBL
Match: A0A0U2UJ76 (ATP synthase subunit c, chloroplastic OS=Oenothera oakesiana OX=482602 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy TrEMBL
Match: U6A3L6 (ATP synthase F0 sector subunit C OS=Monocostus uniflorus OX=4634 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy TrEMBL
Match: A0A218KG23 (ATP synthase subunit c, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy TrEMBL
Match: A0A0U2SNX2 (ATP synthase subunit c, chloroplastic OS=Oenothera grandiflora OX=49455 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. ExPASy TrEMBL
Match: A0A482CGV6 (ATP synthase F0 sector subunit C OS=Solanum violaceimarmoratum OX=315348 GN=atpH PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. NCBI nr
Match: KAG6540592.1 (hypothetical protein Mapa_018107 [Marchantia paleacea])

HSP 1 Score: 94.4 bits (233), Expect = 6.03e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. NCBI nr
Match: DAD43601.1 (TPA_asm: hypothetical protein HUJ06_001831 [Nelumbo nucifera])

HSP 1 Score: 94.0 bits (232), Expect = 6.84e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52
          MNPLISAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. NCBI nr
Match: AHM88892.1 (ATP synthase CF0 subunit III, partial [Lagenaria siceraria])

HSP 1 Score: 94.0 bits (232), Expect = 9.77e-24
Identity = 51/52 (98.08%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52
          MNPLISAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. NCBI nr
Match: ARV78259.1 (ATP synthase CF0 C subunit [Aneura pinguis] >ASN73860.1 ATP synthase CF0 C subunit [Aneura pinguis])

HSP 1 Score: 94.4 bits (233), Expect = 9.78e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. NCBI nr
Match: YP_009682225.1 (ATP synthase CF0 subunit III [Fissidens nobilis] >YP_009867577.1 ATP synthase CF0 subunit III [Drepanocladus aduncus] >QDQ38697.1 ATP synthase CF0 subunit III [Fissidens nobilis] >QKG04822.1 ATP synthase CF0 subunit III [Drepanocladus aduncus])

HSP 1 Score: 94.4 bits (233), Expect = 9.78e-24
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52
          MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 52

[Close]

BLAST of IVF0024117 vs. TAIR 10
Match: ATCG00140.1 (ATP synthase subunit C family protein )

HSP 1 Score: 93.2 bits (230), Expect = 6.6e-20
Identity = 50/52 (96.15%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNPLISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGT 53
          MNPL+SAASVIAAGLAVGLASIGPG+GQGTAAGQAVEGIARQPEAEGKIRGT
Sbjct: 1  MNPLVSAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGT 52

The following BLAST results are available for this feature:

BLAST of IVF0024117 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6WQW2	5.4e-19	100.00	ATP synthase subunit c, chloroplastic OS=Cucumis sativus OX=3659 GN=atpH PE=3 SV...	[more]
P62481	5.4e-19	100.00	ATP synthase subunit c, chloroplastic OS=Marchantia polymorpha OX=3197 GN=atpH P...	[more]
B0Z4N0	5.4e-19	100.00	ATP synthase subunit c, chloroplastic OS=Oenothera argillicola OX=3940 GN=atpH P...	[more]
B0Z4W4	5.4e-19	100.00	ATP synthase subunit c, chloroplastic OS=Oenothera biennis OX=3942 GN=atpH PE=3 ...	[more]
P62480	5.4e-19	100.00	ATP synthase subunit c, chloroplastic OS=Oenothera elata subsp. hookeri OX=85636...	[more]

BLAST of IVF0024117 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0U2UJ76	2.0e-16	100.00	ATP synthase subunit c, chloroplastic OS=Oenothera oakesiana OX=482602 GN=atpH P...	[more]
U6A3L6	2.0e-16	100.00	ATP synthase F0 sector subunit C OS=Monocostus uniflorus OX=4634 GN=atpH PE=3 SV...	[more]
A0A218KG23	2.0e-16	100.00	ATP synthase subunit c, chloroplastic OS=Cucumis sativus var. hardwickii OX=3192...	[more]
A0A0U2SNX2	2.0e-16	100.00	ATP synthase subunit c, chloroplastic OS=Oenothera grandiflora OX=49455 GN=atpH ...	[more]
A0A482CGV6	2.0e-16	100.00	ATP synthase F0 sector subunit C OS=Solanum violaceimarmoratum OX=315348 GN=atpH...	[more]

BLAST of IVF0024117 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6540592.1	6.03e-24	100.00	hypothetical protein Mapa_018107 [Marchantia paleacea]	[more]
DAD43601.1	6.84e-24	98.08	TPA_asm: hypothetical protein HUJ06_001831 [Nelumbo nucifera]	[more]
AHM88892.1	9.77e-24	98.08	ATP synthase CF0 subunit III, partial [Lagenaria siceraria]	[more]
ARV78259.1	9.78e-24	100.00	ATP synthase CF0 C subunit [Aneura pinguis] >ASN73860.1 ATP synthase CF0 C subun...	[more]
YP_009682225.1	9.78e-24	100.00	ATP synthase CF0 subunit III [Fissidens nobilis] >YP_009867577.1 ATP synthase CF...	[more]

BLAST of IVF0024117 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00140.1	6.6e-20	96.15	ATP synthase subunit C family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000454	ATP synthase, F0 complex, subunit C	PRINTS	PR00124	ATPASEC	coord: 33..48 score: 43.63 coord: 12..31 score: 42.45
IPR000454	ATP synthase, F0 complex, subunit C	PANTHER	PTHR10031	ATP SYNTHASE LIPID-BINDING PROTEIN, MITOCHONDRIAL	coord: 1..49
IPR002379	V-ATPase proteolipid subunit C-like domain	PFAM	PF00137	ATP-synt_C	coord: 11..45 e-value: 2.3E-10 score: 40.7
IPR038662	F1F0 ATP synthase subunit C superfamily	GENE3D	1.20.20.10	F1F0 ATP synthase subunit C	coord: 1..52 e-value: 5.6E-21 score: 76.3
None	No IPR available	PANTHER	PTHR10031:SF41	ATPASE, F0 COMPLEX, SUBUNIT C, V-ATPASE PROTEOLIPID SUBUNIT C-LIKE DOMAIN PROTEIN-RELATED	coord: 1..49
IPR035921	F/V-ATP synthase subunit C superfamily	SUPERFAMILY	81333	F1F0 ATP synthase subunit C	coord: 3..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0024117.1	IVF0024117.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:1902600	proton transmembrane transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0045263	proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component	GO:0033177	proton-transporting two-sector ATPase complex, proton-transporting domain
molecular_function	GO:0008289	lipid binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0015078	proton transmembrane transporter activity