IVF0024001 (gene) Melon (IVF77) v1

Overview
NameIVF0024001
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionUnknown protein
Locationchr03: 6762407 .. 6762727 (+)
RNA-Seq ExpressionIVF0024001
SyntenyIVF0024001
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTAATGCTCCACCCCTTCCACATATCGTGGAACTTTATATTTCTCAACCAAATTTGTCAAGTTCAGCTCCAATAATTGAAGAGACTAACGAGTTTAAAACTTGTAATAATGAGCAATATGATTGTTTCGACCCCACTATCGCTACAAATGTAGAGGTCGCTGAAGTTGATGATGATGATAGTGATATAGATCAACCACTTGCTGAACTTTTCGGTGTTCATGATGTCCCTGAAGCCTTCAACCATATAGACTTGAATGAAATGAATAGTGGTTTTGATAATAATCTTGATGAAGAAAATTGGGATCTGAGCATTTGA

mRNA sequence

ATGAGTAATGCTCCACCCCTTCCACATATCGTGGAACTTTATATTTCTCAACCAAATTTGTCAAGTTCAGCTCCAATAATTGAAGAGACTAACGAGTTTAAAACTTGTAATAATGAGCAATATGATTGTTTCGACCCCACTATCGCTACAAATGTAGAGGTCGCTGAAGTTGATGATGATGATAGTGATATAGATCAACCACTTGCTGAACTTTTCGGTGTTCATGATGTCCCTGAAGCCTTCAACCATATAGACTTGAATGAAATGAATAGTGGTTTTGATAATAATCTTGATGAAGAAAATTGGGATCTGAGCATTTGA

Coding sequence (CDS)

ATGAGTAATGCTCCACCCCTTCCACATATCGTGGAACTTTATATTTCTCAACCAAATTTGTCAAGTTCAGCTCCAATAATTGAAGAGACTAACGAGTTTAAAACTTGTAATAATGAGCAATATGATTGTTTCGACCCCACTATCGCTACAAATGTAGAGGTCGCTGAAGTTGATGATGATGATAGTGATATAGATCAACCACTTGCTGAACTTTTCGGTGTTCATGATGTCCCTGAAGCCTTCAACCATATAGACTTGAATGAAATGAATAGTGGTTTTGATAATAATCTTGATGAAGAAAATTGGGATCTGAGCATTTGA

Protein sequence

MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDDDSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEENWDLSI
Homology
BLAST of IVF0024001 vs. ExPASy TrEMBL
Match: A0A5D3D569 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold481G00410 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 1.3e-49
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD 60
           MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD
Sbjct: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD 60

Query: 61  DSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEEN 102
           DSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEEN
Sbjct: 61  DSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEEN 101

BLAST of IVF0024001 vs. ExPASy TrEMBL
Match: A0A0A0LX24 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G446390 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 26  IIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDDDSDIDQPLAELFGVHDVPEAFNHID 85
           ++++ NEF+T  NE+YDCFD TIATN E AE          P AELFGVHDVPEAFN ID
Sbjct: 1   MVDDINEFET-PNEEYDCFDSTIATNAEEAE----------PPAELFGVHDVPEAFNQID 60

Query: 86  LNEMNSGFDNNLDEEN 102
           LNEMNSGFDNNLDEEN
Sbjct: 61  LNEMNSGFDNNLDEEN 65

BLAST of IVF0024001 vs. ExPASy TrEMBL
Match: A0A5D3D2L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00370 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.6e-10
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 26 IIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDDDSDIDQPLAELFGVHDVPEAFN 83
          +IE+ N+F+T  NE+ +CFD TI    E AEVDDD SD+DQPL ELFGVHDVPEAFN
Sbjct: 1  MIEDINKFET-RNEEDNCFDSTITPIAEDAEVDDDGSDLDQPLVELFGVHDVPEAFN 56

BLAST of IVF0024001 vs. NCBI nr
Match: TYK18693.1 (hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (520), Expect = 1.09e-65
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0

Query: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD 60
           MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD
Sbjct: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDD 60

Query: 61  DSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEEN 101
           DSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEEN
Sbjct: 61  DSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEEN 101

BLAST of IVF0024001 vs. NCBI nr
Match: KGN65554.1 (hypothetical protein Csa_019630 [Cucumis sativus])

HSP 1 Score: 97.4 bits (241), Expect = 4.90e-24
Identity = 52/76 (68.42%), Postives = 58/76 (76.32%), Query Frame = 0

Query: 26  IIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDDDSDIDQPLAELFGVHDVPEAFNHID 85
           ++++ NEF+T  NE+YDCFD TIATN E AE          P AELFGVHDVPEAFN ID
Sbjct: 1   MVDDINEFET-PNEEYDCFDSTIATNAEEAE----------PPAELFGVHDVPEAFNQID 60

Query: 86  LNEMNSGFDNNLDEEN 101
           LNEMNSGFDNNLDEEN
Sbjct: 61  LNEMNSGFDNNLDEEN 65

BLAST of IVF0024001 vs. NCBI nr
Match: XP_038877923.1 (uncharacterized protein LOC120070133 [Benincasa hispida])

HSP 1 Score: 82.0 bits (201), Expect = 1.58e-15
Identity = 50/104 (48.08%), Postives = 64/104 (61.54%), Query Frame = 0

Query: 1   MSNAPPLPHIVELYISQPNLSSSAPIIEETN----EFKTCNNEQYDCFDPTIATNVEVAE 60
           MSNAP  P+ VELYISQP++ S     EE      E     +E YD   PTIATN E  +
Sbjct: 89  MSNAPYPPNRVELYISQPSVPSPTSTREEVETVELESHVVEDEHYD---PTIATNDEEVK 148

Query: 61  VDDDDSDIDQPLAELFGVHDVPEAFNHIDLNEMNSGFDNNLDEE 100
           +DDDD D+DQ  ++ +GVH+VPE F  IDLNEM +  D+   E+
Sbjct: 149 MDDDDIDLDQLSSQFYGVHEVPETFTEIDLNEMTTEPDSTTGED 189

BLAST of IVF0024001 vs. NCBI nr
Match: KAA0031959.1 (hypothetical protein E6C27_scaffold134G00410 [Cucumis melo var. makuwa] >TYK16779.1 hypothetical protein E5676_scaffold96G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 3.55e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 0

Query: 26 IIEETNEFKTCNNEQYDCFDPTIATNVEVAEVDDDDSDIDQPLAELFGVHDVPEAFN 82
          +IE+ N+F+T  NE+ +CFD TI    E AEVDDD SD+DQPL ELFGVHDVPEAFN
Sbjct: 1  MIEDINKFET-RNEEDNCFDSTITPIAEDAEVDDDGSDLDQPLVELFGVHDVPEAFN 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3D5691.3e-49100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0LX241.7e-1768.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G446390 PE=4 SV=1[more]
A0A5D3D2L72.6e-1066.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
TYK18693.11.09e-65100.00hypothetical protein E5676_scaffold481G00410 [Cucumis melo var. makuwa][more]
KGN65554.14.90e-2468.42hypothetical protein Csa_019630 [Cucumis sativus][more]
XP_038877923.11.58e-1548.08uncharacterized protein LOC120070133 [Benincasa hispida][more]
KAA0031959.13.55e-1566.67hypothetical protein E6C27_scaffold134G00410 [Cucumis melo var. makuwa] >TYK1677... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0024001.1IVF0024001.1mRNA