IVF0023985 (gene) Melon (IVF77) v1

Overview
NameIVF0023985
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description30S ribosomal protein S16
Locationchr02: 2141334 .. 2143860 (-)
RNA-Seq ExpressionIVF0023985
SyntenyIVF0023985
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTGAGAAGTGGAGGCGCCAGTTTCTGTTCTGTAATCTATCGTCATTTCAGTTTGGCGAATTTCAAGATTTTTGTAGGGTTTTACGAGCTCGAAAATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCTTACCAGGTTAGTTGGTTAATTACTCATTGCTAACTTGCGTATTGGAATTTAGATTCTTGATTTGAATGTTTCTTTTCTGTCTTTCCTTGATTTGAGTAATTTTTTTTTTGTTTGTAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTAAGTGATTGTTTTTGACTTATTTATACTTTAATTCATTCTAAAATATGCACTGGGTTGCAATTGTAAATGCTTGATTATTTGTTAGTCAGAATAGACTACTCCATTGTCCGTGCTTTTCAATCGTCTTTTACTTGGTTTTTTTGAAATTTTCGATTTGTCTCCATGTTGCTTAGAGTGTTATTAAGAAAATGACTAACTTATTTTCATTTAGTTTTGGTTATGGGACACAAACCAGCCCTTAAATATAGATATTCTGGTATATTAGTAAATGAATGGTTCCCAGATTTTCTTCCAGACGATATTCATTTTTATTTCTCATTAAAATGAATGGCGTCTTCTGTCTTCCTTTGGAAATCGTAGCCCATAACCAATGGGGAGACTAATAACAGACCTACTTTCATGATATTATACCTCTACCTTGTAGATCTCGTCTTATTGACCATACCTGACACCTCTAGTCCGTCAAAGTCACTGAATGAGTATGTTGTGAATTCCTAAAACAGACTATACGTCATATTCACGATTGTTTGGTTTGTTCATTCTGTACCAATACAAATCATGGAACCCACCCTGAATAATCCCACCTTTTGCGTGATCAAATCCATCATCAAAATTGGAGGGATCACTAATATTTGACTTTCTGGCGCATGAACAAAGCATTTAACTTATCTTGCTGTCAATGTACTTATTGTAGTTAGTCTAATATGTTGACAATACAAACTAGCTGAAACTGTAAGGCCTGGTGGTGAAGCAACGTGCTATAGAAACAAGAGGTCCTAATTCCAATTTTATGCTATATTTCTTTGTATGCCATTTCGTACTAACAGTTCACATCTTGCACCTGATGAATCAAAGAATGGAAAACGGTTTGGATGGTTGAGAAGTGATCGTATTTTCTTAATATCATAAGCTTTTAACTGTAGTAGCTGGCTATCAAGTTGATGGAGAGGATGAGGGAATCCTTACTTTTTGGAGCATCTAGTCAATTGATGAAGTGATTAGGCTGCTCCTTGGGAATTTAAAGTCTTCTGTTTTTAGTTCAAGTTCTGATTAATGATTTGTAGACATCTCAGAGGACAAAAAATTTAAGATGAAATTGTTGTCTTTGAAGACCATTCTTTTTGTATGATCTCATGCAATGTATAAAAGTAAATCATCAGGCATAAGTTTTTAGCATTCAGAGTTTCGTCTCTGAGTTCTTTGTGGCTTAGAACCTATCAGTTCTAAATTCCCCCAATCCCTTGATTGCTCTAAATTCTCATAAGCCCTCCTTTTCTTTTTCTGTTCTTTTATTTGATCCTATATTTCAAAAAGAGTTGCTATTAGCTGAGACTGGATAATTTAGATTATTTTGCTGCATCAGCTGTGATGTTTTACTATGGTAGTATTCATCTAACTCATGGGCACAATAACCTCGTCTTTCATACTAATCATTCACTCATCACCGTTTCCCATCCATCTAGGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGCAGCGTATTCTTTTTCGAGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTCGTCACTCCAGAGAAGAAGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAGTTTTCTTTCAGAAGAATCTCGGGCTCTGGAATTATCATTCAAATGTGATTTCCAACTCATCCTGTTGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATGGGGAATTAGAAAAAGCAAAGTAGTTTCAGTTTATTCTGGAACATTAAAATGGAGTCTGTAGATATTATCAACGTCCAATCCTCCAGTACCAAGGCATAGTAGGGTTGTTGGACTGAGCTTATCTCACCGAAGACTAGCCATTACGTTGAGAAAACATGACCTTGTTGTCTAATTTAAACATGATTAGATCTCTGTTTTGTTCTTTCTTTGTTATGTTATTTTGATTAAAATGAGAGAAATATTCATTTTGCTTTTCTAGTAGCCAGATTCTGAAAACACCATCCTTTATCACTTTTTACTCATTTGATATTTATGTATACTGATTTGCTGAG

mRNA sequence

GTGAGAAGTGGAGGCGCCAGTTTCTGTTCTGTAATCTATCGTCATTTCAGTTTGGCGAATTTCAAGATTTTTGTAGGGTTTTACGAGCTCGAAAATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCTTACCAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGCAGCGTATTCTTTTTCGAGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTCGTCACTCCAGAGAAGAAGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAGTTTTCTTTCAGAAGAATCTCGGGCTCTGGAATTATCATTCAAATGTGATTTCCAACTCATCCTGTTGTTCAGGTAAAATAGTTCAATAAATCGGTCCATTTACTTTTGATTACAAGATGCAGTTTTTGATGGGGAATTAGAAAAAGCAAAGTAGTTTCAGTTTATTCTGGAACATTAAAATGGAGTCTGTAGATATTATCAACGTCCAATCCTCCAGTACCAAGGCATAGTAGGGTTGTTGGACTGAGCTTATCTCACCGAAGACTAGCCATTACGTTGAGAAAACATGACCTTGTTGTCTAATTTAAACATGATTAGATCTCTGTTTTGTTCTTTCTTTGTTATGTTATTTTGATTAAAATGAGAGAAATATTCATTTTGCTTTTCTAGTAGCCAGATTCTGAAAACACCATCCTTTATCACTTTTTACTCATTTGATATTTATGTATACTGATTTGCTGAG

Coding sequence (CDS)

ATGGTGGTTCGAATTCGATTGTCCAGATTTGGTTGTAAGAACAAGCCGTTTTACAGGGTCATGGCTGCCGATAGCCGATCTCCTCGTGACGGCAAACATCTTGAGATTCTAGGTTACTATAATCCCTTACCAGGTCAGGATGGTGGTAAACGAATGGGTATTAATTTTGAGAGAGTGAAGTATTGGCTTTCAGTTGGTGCTCAGCCTTCGGACCCCATGCAGCGTATTCTTTTTCGAGCAGGGTTACTTCCACCACCCCCAATGGTTGCAATGGGACGTAAAGGCGGACCACGTGATACTCGTCCTGTTGATCCTTTGAGTGGGCGCTTCGTCACTCCAGAGAAGAAGCCAACTGATAGTTCCAATGGTGAAGTTGGTGATGCCGATTCATAG

Protein sequence

MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKYWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDSSNGEVGDADS
Homology
[Close]
BLAST of IVF0023985 vs. ExPASy Swiss-Prot
Match: Q9LTS6 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RPS16-2 PE=1 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 7.4e-57
Identity = 99/130 (76.15%), Postives = 119/130 (91.54%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMG+ F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QR+LFR+GLLPPPPMVAMGRKGG RDTRPVDP++GR+V  E K  ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 SNGEVGDADS 131
           ++ +  + D+
Sbjct: 121 NDNQPKEEDT 130

[Close]
BLAST of IVF0023985 vs. ExPASy Swiss-Prot
Match: O65686 (30S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS16-1 PE=2 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.2e-32
Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ + F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP+D ++ +LFRAGL+PP PMV +G K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]
BLAST of IVF0023985 vs. ExPASy Swiss-Prot
Match: Q16AN8 (30S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) OX=375451 GN=rpsP PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-20
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 0 

Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDAERVQ 60

Query: 61 YWLSVGAQPSDPMQRILFRAGL 83
          YWL  GAQP+D + R+L  AGL
Sbjct: 61 YWLGQGAQPTDRVARMLEAAGL 82

[Close]
BLAST of IVF0023985 vs. ExPASy Swiss-Prot
Match: A4WNX7 (30S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) OX=349102 GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 0 

Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
          M ++IRL+R G K +P Y ++A+DSR PRDG+ LE LG YNPL  +D   R+ +N ERV+
Sbjct: 1  MAMKIRLARGGSKKRPHYSIVASDSRMPRDGRFLEKLGTYNPLLAKDSEDRIKMNVERVQ 60

Query: 61 YWLSVGAQPSDPMQRILFRAGL 83
          YWLS GAQP+D + R L  AGL
Sbjct: 61 YWLSQGAQPTDRVARFLEAAGL 82

[Close]
BLAST of IVF0023985 vs. ExPASy Swiss-Prot
Match: Q5LNF2 (30S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) OX=246200 GN=rpsP PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 2.7e-19
Identity = 44/83 (53.01%), Postives = 63/83 (75.90%), Query Frame = 0 

Query: 1  MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
          M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+
Sbjct: 1  MAMKIRLARGGSKKRPFYRIVAADSRMPRDGRFIEKLGTYNPLLPKDSEERVKMDVERVQ 60

Query: 61 YWLSVGAQPSDPMQRILFRAGLL 84
          YWLS GAQ +D + R+L  AG++
Sbjct: 61 YWLSQGAQTTDRVARMLEAAGVV 83

[Close]
BLAST of IVF0023985 vs. ExPASy TrEMBL
Match: A0A5D3CDW9 (30S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G001970 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.3e-69
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGEVGDADS 131
           SNGEVGDADS
Sbjct: 121 SNGEVGDADS 130

[Close]
BLAST of IVF0023985 vs. ExPASy TrEMBL
Match: A0A1S3BQ70 (30S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.3e-69
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGEVGDADS 131
           SNGEVGDADS
Sbjct: 121 SNGEVGDADS 130

[Close]
BLAST of IVF0023985 vs. ExPASy TrEMBL
Match: A0A0A0LZG2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589640 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.8e-64
Identity = 119/124 (95.97%), Postives = 122/124 (98.39%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTP KKPTD 
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 121 SNGE 125
           SNGE
Sbjct: 121 SNGE 124

[Close]
BLAST of IVF0023985 vs. ExPASy TrEMBL
Match: A0A6J1HXD7 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111467724 PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.0e-61
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRF TP+K   DS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 SNGEVGDADS 131
           ++ + GDADS
Sbjct: 121 NSSKDGDADS 130

[Close]
BLAST of IVF0023985 vs. ExPASy TrEMBL
Match: A0A6J1D251 (30S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016603 PE=3 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 1.8e-61
Identity = 116/130 (89.23%), Postives = 125/130 (96.15%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPE KPTD 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPE-KPTDD 120

Query: 121 SNGEVGDADS 131
           S+ + G+ADS
Sbjct: 121 SSSKDGNADS 129

[Close]
BLAST of IVF0023985 vs. NCBI nr
Match: XP_008450874.1 (PREDICTED: 30S ribosomal protein S16 [Cucumis melo] >KAA0055812.1 30S ribosomal protein S16 [Cucumis melo var. makuwa] >TYK10063.1 30S ribosomal protein S16 [Cucumis melo var. makuwa])

HSP 1 Score: 272 bits (695), Expect = 3.91e-92
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS
Sbjct: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120

Query: 121 SNGEVGDADS 130
           SNGEVGDADS
Sbjct: 121 SNGEVGDADS 130

[Close]
BLAST of IVF0023985 vs. NCBI nr
Match: XP_011659994.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus] >KGN66257.1 hypothetical protein Csa_007181 [Cucumis sativus])

HSP 1 Score: 254 bits (649), Expect = 3.69e-85
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFR+GLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTP KKPTD 
Sbjct: 61  YWLSVGAQPSDPVQRILFRSGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPAKKPTDG 120

Query: 121 SNGEV 125
           SNGE 
Sbjct: 121 SNGEA 125

[Close]
BLAST of IVF0023985 vs. NCBI nr
Match: XP_038880699.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida])

HSP 1 Score: 249 bits (636), Expect = 3.79e-83
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTR VDPLSGRFVTPEK PTDS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRLVDPLSGRFVTPEK-PTDS 120

Query: 121 SNGEVGDADS 130
           S+G+ GDADS
Sbjct: 121 SSGKDGDADS 129

[Close]
BLAST of IVF0023985 vs. NCBI nr
Match: XP_022968515.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 246 bits (627), Expect = 9.24e-82
Identity = 115/130 (88.46%), Postives = 123/130 (94.62%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRF TP+K   DS
Sbjct: 61  YWLSVGAQPSDPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFTTPQKATDDS 120

Query: 121 SNGEVGDADS 130
           ++ + GDADS
Sbjct: 121 NSSKDGDADS 130

[Close]
BLAST of IVF0023985 vs. NCBI nr
Match: XP_022147743.1 (30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 245 bits (625), Expect = 1.80e-81
Identity = 116/130 (89.23%), Postives = 125/130 (96.15%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVR+RLSRFGCKNKPFYRVMAADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVK
Sbjct: 1   MVVRLRLSRFGCKNKPFYRVMAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPS+P+QRILFRAG+LPPPPMVAM RKGGPRDTRPVDPLSGRFVTPEK PTD 
Sbjct: 61  YWLSVGAQPSEPVQRILFRAGVLPPPPMVAMARKGGPRDTRPVDPLSGRFVTPEK-PTDD 120

Query: 121 SNGEVGDADS 130
           S+ + G+ADS
Sbjct: 121 SSSKDGNADS 129

[Close]
BLAST of IVF0023985 vs. TAIR 10
Match: AT5G56940.1 (Ribosomal protein S16 family protein )

HSP 1 Score: 221.1 bits (562), Expect = 5.2e-58
Identity = 99/130 (76.15%), Postives = 119/130 (91.54%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           MVVRIRLSRFGCKN+PF+RVMAADSRSPRDGKHLE+LGY+NPLPGQDGGKRMG+ F+R+K
Sbjct: 1   MVVRIRLSRFGCKNRPFFRVMAADSRSPRDGKHLEVLGYFNPLPGQDGGKRMGLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDTRPVDPLSGRFVTPEKKPTDS 120
           YWLSVGAQPSDP+QR+LFR+GLLPPPPMVAMGRKGG RDTRPVDP++GR+V  E K  ++
Sbjct: 61  YWLSVGAQPSDPVQRLLFRSGLLPPPPMVAMGRKGGARDTRPVDPMTGRYVDAENKTVNA 120

Query: 121 SNGEVGDADS 131
           ++ +  + D+
Sbjct: 121 NDNQPKEEDT 130

[Close]
BLAST of IVF0023985 vs. TAIR 10
Match: AT4G34620.1 (small subunit ribosomal protein 16 )

HSP 1 Score: 139.8 bits (351), Expect = 1.5e-33
Identity = 60/112 (53.57%), Postives = 87/112 (77.68%), Query Frame = 0 

Query: 1   MVVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVK 60
           M V+IRL+R GCK++PFYRV+ AD +S RDGK +E+LG+Y+PL G++   R+ + F+R+K
Sbjct: 1   MTVKIRLARLGCKHRPFYRVVVADEKSRRDGKQIEVLGFYDPLQGKEDADRVSLKFDRIK 60

Query: 61  YWLSVGAQPSDPMQRILFRAGLLPPPPMVAMGRKGGPRDT-RPVDPLSGRFV 112
           YWLSVGAQP+D ++ +LFRAGL+PP PMV +G K G + T + V P++G  +
Sbjct: 61  YWLSVGAQPTDTVESMLFRAGLIPPKPMVVVGSKNGQKSTSQHVSPITGEIL 112

[Close]
BLAST of IVF0023985 vs. TAIR 10
Match: ATCG00050.1 (ribosomal protein S16 )

HSP 1 Score: 53.5 bits (127), Expect = 1.4e-07
Identity = 27/81 (33.33%), Postives = 45/81 (55.56%), Query Frame = 0 

Query: 2  VVRIRLSRFGCKNKPFYRVMAADSRSPRDGKHLEILGYYNPLPGQDGGKRMGINFERVKY 61
          +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       +N   +  
Sbjct: 1  MVKLRLKRCGRKQRAVYRILAIDVRYRREGRDLSKVGFYDPITNQ-----TFLNLSAILD 60

Query: 62 WLSVGAQPSDPMQRILFRAGL 83
          +L  GAQP+     I  +AG+
Sbjct: 61 FLKKGAQPTRTAHDISKKAGI 76

The following BLAST results are available for this feature:
BLAST of IVF0023985 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LTS67.4e-5776.1530S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Arabidopsis thaliana... [more]
O656862.2e-3253.5730S ribosomal protein S16-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP... [more]
Q16AN87.2e-2054.8830S ribosomal protein S16 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh ... [more]
A4WNX72.7e-1954.8830S ribosomal protein S16 OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.... [more]
Q5LNF22.7e-1953.0130S ribosomal protein S16 OS=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 /... [more]
BLAST of IVF0023985 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CDW91.3e-69100.0030S ribosomal protein S16 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A1S3BQ701.3e-69100.0030S ribosomal protein S16 OS=Cucumis melo OX=3656 GN=LOC103492337 PE=3 SV=1[more]
A0A0A0LZG23.8e-6495.97Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G589640 PE=3 SV=1[more]
A0A6J1HXD71.0e-6188.4630S ribosomal protein S16-2, chloroplastic/mitochondrial-like OS=Cucurbita maxim... [more]
A0A6J1D2511.8e-6189.2330S ribosomal protein S16-2, chloroplastic/mitochondrial OS=Momordica charantia ... [more]
BLAST of IVF0023985 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008450874.13.91e-92100.00PREDICTED: 30S ribosomal protein S16 [Cucumis melo] >KAA0055812.1 30S ribosomal ... [more]
XP_011659994.13.69e-8595.2030S ribosomal protein S16-2, chloroplastic/mitochondrial [Cucumis sativus] >KGN6... [more]
XP_038880699.13.79e-8392.3130S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa h... [more]
XP_022968515.19.24e-8288.4630S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima][more]
XP_022147743.11.80e-8189.2330S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia][more]
BLAST of IVF0023985 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G56940.15.2e-5876.15Ribosomal protein S16 family protein [more]
AT4G34620.11.5e-3353.57small subunit ribosomal protein 16 [more]
ATCG00050.11.4e-0733.33ribosomal protein S16 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000307Ribosomal protein S16TIGRFAMTIGR00002TIGR00002coord: 3..82
e-value: 1.3E-30
score: 103.2
IPR000307Ribosomal protein S16PFAMPF00886Ribosomal_S16coord: 9..70
e-value: 3.6E-26
score: 91.0
IPR000307Ribosomal protein S16PANTHERPTHR1291930S RIBOSOMAL PROTEIN S16coord: 1..111
IPR000307Ribosomal protein S16HAMAPMF_00385Ribosomal_S16coord: 2..80
score: 23.278223
IPR023803Ribosomal protein S16 domain superfamilyGENE3D3.30.1320.10coord: 1..119
e-value: 2.6E-45
score: 155.4
IPR023803Ribosomal protein S16 domain superfamilySUPERFAMILY54565Ribosomal protein S16coord: 3..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..130
NoneNo IPR availablePANTHERPTHR12919:SF3030S RIBOSOMAL PROTEIN S16-LIKEcoord: 1..111

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023985.1IVF0023985.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome