IVF0023920 (gene) Melon (IVF77) v1

Overview


Name	IVF0023920
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein ROOT HAIR DEFECTIVE 3 homolog
Location	chr07: 6221592 .. 6222090 (+)
RNA-Seq Expression	IVF0023920
Synteny	IVF0023920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGTAGTGGTGCACTTCTATGCCCTTTTTGGTTTTCATGTGTTTCTTTTGCTTGTACTTTCGTTTATTTTTGTCTTTTTTATTATTTATTTATTTTTTATTTTTTCACAAATGTGTTTGTCAATGTTTTGAATTCAGTATATCACTGCATGCTTCTTTTTGCAGATACACGTATGTGTATGTATATATCTGTATGTGTGTGTATGTAAGGATATGTGTGTGTATGTGTATGTATGTTTATGTATGTATTTATGCAACATACTTATTTGTTTGTATCATATCAAGCTAAGACGTATACTTTGGTTGTTTCTTAATTTGCTTTTGTCACATTCTTTTTAAGGACAACACTGCATTTGAGAAGCAAAGTACCCTCTTTGCGCTTGCCGTGTAA

mRNA sequence

ATGCCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGTAGTGGACAACACTGCATTTGAGAAGCAAAGTACCCTCTTTGCGCTTGCCGTGTAA

Coding sequence (CDS)

ATGCCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATCGAGCCTTGTACACTTGTGATGGATTTGGAAGGAACTGATGGAAGAGAGCGAGTAGTGGACAACACTGCATTTGAGAAGCAAAGTACCCTCTTTGCGCTTGCCGTGTAA

Protein sequence

MPLSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV

Homology

[Close]

BLAST of IVF0023920 vs. ExPASy Swiss-Prot
Match: Q9SSN0 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 96.7 bits (239), Expect = 8.9e-20
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALA+
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]

BLAST of IVF0023920 vs. ExPASy Swiss-Prot
Match: P93042 (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-19
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]

BLAST of IVF0023920 vs. ExPASy Swiss-Prot
Match: Q2QMH2 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 3.4e-19
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIW+ARC G+EPCT+VMDLEGTDGRER  D+TAFEKQS+LFALA+
Sbjct: 74  RSQTTKGIWIARCVGVEPCTVVMDLEGTDGRERGEDDTAFEKQSSLFALAI 124

[Close]

BLAST of IVF0023920 vs. ExPASy Swiss-Prot
Match: Q0JLS6 (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.4e-17
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIW+A+   IEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 71  RSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]

BLAST of IVF0023920 vs. ExPASy Swiss-Prot
Match: Q9FKE9 (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 5.4e-17
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIW+ARC GIEP T+ MDLEGTDGRER  D+T FEKQS LFA+AV
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAV 124

[Close]

BLAST of IVF0023920 vs. ExPASy TrEMBL
Match: A0A7J7C125 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Tripterygium wilfordii OX=458696 GN=HS088_TW22G01557 PE=3 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.0e-18
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           + RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 71  IGRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 123

[Close]

BLAST of IVF0023920 vs. ExPASy TrEMBL
Match: A0A103YNE3 (Root hair defective 3 GTP-binding OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009266 PE=3 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 8.6e-18
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           L RSQTTKGIW+ARCTGIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 81  LLRSQTTKGIWMARCTGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAV 133

[Close]

BLAST of IVF0023920 vs. ExPASy TrEMBL
Match: A0A6J1KMA1 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494586 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           + RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 72  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]

BLAST of IVF0023920 vs. ExPASy TrEMBL
Match: A0A6J1KDB3 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494586 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           + RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 73  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 125

[Close]

BLAST of IVF0023920 vs. ExPASy TrEMBL
Match: A0A6J1HJ25 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464506 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 46/53 (86.79%), Postives = 48/53 (90.57%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           + RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 72  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 124

[Close]

BLAST of IVF0023920 vs. NCBI nr
Match: KAF2301062.1 (hypothetical protein GH714_019756 [Hevea brasiliensis])

HSP 1 Score: 95.5 bits (236), Expect = 2.95e-23
Identity = 46/51 (90.20%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 55
           RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 100 RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 150

[Close]

BLAST of IVF0023920 vs. NCBI nr
Match: KAG2321814.1 (hypothetical protein Bca52824_015027 [Brassica carinata])

HSP 1 Score: 95.1 bits (235), Expect = 1.54e-22
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 55
           RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALA+
Sbjct: 84  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 134

[Close]

BLAST of IVF0023920 vs. NCBI nr
Match: MCH81464.1 (ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium])

HSP 1 Score: 94.0 bits (232), Expect = 1.78e-22
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 55
           RSQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 92  RSQTTKGIWMARCAGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALFALAV 142

[Close]

BLAST of IVF0023920 vs. NCBI nr
Match: VFR00176.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 95.1 bits (235), Expect = 2.97e-22
Identity = 45/51 (88.24%), Postives = 48/51 (94.12%), Query Frame = 0


Query: 5  RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 55
          RSQTTKGIW+ARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS+LFALAV
Sbjct: 7  RSQTTKGIWMARCVGIEPCTLVMDLEGTDGRERGEDDTAFEKQSSLFALAV 57

[Close]

BLAST of IVF0023920 vs. NCBI nr
Match: XP_038694472.1 (protein ROOT HAIR DEFECTIVE 3-like [Tripterygium wilfordii] >KAF5727860.1 Root hair defective 3 GTP-binding protein (RHD3) isoform 2 [Tripterygium wilfordii])

HSP 1 Score: 98.2 bits (243), Expect = 4.35e-22
Identity = 47/53 (88.68%), Postives = 49/53 (92.45%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 55
           + RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 71  IGRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAV 123

[Close]

BLAST of IVF0023920 vs. TAIR 10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 96.7 bits (239), Expect = 6.3e-21
Identity = 45/51 (88.24%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIWLARC GIEPCTLVMDLEGTDGRER  D+TAFEKQS LFALA+
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]

BLAST of IVF0023920 vs. TAIR 10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-20
Identity = 44/51 (86.27%), Postives = 47/51 (92.16%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 121

[Close]

BLAST of IVF0023920 vs. TAIR 10
Match: AT3G13870.2 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 93.2 bits (230), Expect = 7.0e-20
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 0


Query: 6  SQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
          SQTTKGIW+ARC GIEPCT+VMDLEGTDGRER  D+TAFEKQS LFALAV
Sbjct: 8  SQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALFALAV 57

[Close]

BLAST of IVF0023920 vs. TAIR 10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-18
Identity = 40/51 (78.43%), Postives = 44/51 (86.27%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERVVDNTAFEKQSTLFALAV 56
           RSQTTKGIW+ARC GIEP T+ MDLEGTDGRER  D+T FEKQS LFA+AV
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALFAIAV 124

The following BLAST results are available for this feature:

BLAST of IVF0023920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSN0	8.9e-20	88.24	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7...	[more]
P93042	2.6e-19	86.27	Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1	[more]
Q2QMH2	3.4e-19	82.35	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q0JLS6	2.4e-17	82.35	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P...	[more]
Q9FKE9	5.4e-17	78.43	Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4...	[more]

BLAST of IVF0023920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7C125	3.0e-18	88.68	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Tripterygium wilfordii OX=458696 GN=HS0...	[more]
A0A103YNE3	8.6e-18	86.79	Root hair defective 3 GTP-binding OS=Cynara cardunculus var. scolymus OX=59895 G...	[more]
A0A6J1KMA1	1.1e-17	86.79	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149458...	[more]
A0A6J1KDB3	1.1e-17	86.79	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149458...	[more]
A0A6J1HJ25	1.1e-17	86.79	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita moschata OX=3662 GN=LOC111464...	[more]

BLAST of IVF0023920 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF2301062.1	2.95e-23	90.20	hypothetical protein GH714_019756 [Hevea brasiliensis]	[more]
KAG2321814.1	1.54e-22	88.24	hypothetical protein Bca52824_015027 [Brassica carinata]	[more]
MCH81464.1	1.78e-22	86.27	ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium]	[more]
VFR00176.1	2.97e-22	88.24	unnamed protein product [Cuscuta campestris]	[more]
XP_038694472.1	4.35e-22	88.68	protein ROOT HAIR DEFECTIVE 3-like [Tripterygium wilfordii] >KAF5727860.1 Root h...	[more]

BLAST of IVF0023920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72960.1	6.3e-21	88.24	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.1	1.8e-20	86.27	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.2	7.0e-20	86.00	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT5G45160.1	3.8e-18	78.43	Root hair defective 3 GTP-binding protein (RHD3)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..55 e-value: 6.3E-6 score: 27.4
IPR008803	RHD3/Sey1	PFAM	PF05879	RHD3	coord: 4..55 e-value: 2.6E-24 score: 85.5
IPR008803	RHD3/Sey1	PANTHER	PTHR45923	PROTEIN SEY1	coord: 5..55
None	No IPR available	PANTHER	PTHR45923:SF15	PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG	coord: 5..55
IPR030386	GB1/RHD3-type guanine nucleotide-binding (G) domain	PROSITE	PS51715	G_GB1_RHD3	coord: 1..55 score: 23.101002

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023920.2	IVF0023920.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding