IVF0023864 (gene) Melon (IVF77) v1

Overview


Name	IVF0023864
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr08: 29624678 .. 29625322 (+)
RNA-Seq Expression	IVF0023864
Synteny	IVF0023864

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCAAATTAAGATTGTATTCAACACAAATATCTTTTCCTTATTTGTTATCTTTTTTTGTGTATAAATGTATATGTATTTTAGTAATTGATATACTGAAAAATTACAGTAGAAATTCATTAAAATCACATGGTATCAGAGCCCTAATCTGTTTGTCGCCGCCGCTGCACATCCGCCAACCAGCCGACAACCATCTGCCGGAAAACTCTGTTTTGTCCTCCATTCAGCCGTCGACCCTTGCTCACCCACCTGCTTAGATCAGTTCTCAGCCTCAGCCTCTGTTCCAGATCTTAGATCTCTGCCTCAGCCTCTGATTCGTTCGCCTCAACCATTGCTTGCCCGCCTCAGCCATTGTTCGGCGAGGACTAGTTTTGTAGGCGAAACTGATACAGATCTACAGATATCTACGTCAACCTCTGTTCGTCCGCTATTCAAGGACATAGATACCCAGATCTCCATCTCTGTTCGTCCGCCATCGTCGACCGATACAAATCTCTGCGATCTCTACCTCAATCTCTGTTCGCCCACCGTGGGGCTCGAACCCACTCCTCCGATTCGTCAGCCTCTGTGCGTCCGCGAAGACCCATTCGTAGACATCCGTTCGTCAGCCTCTGTTCAACCGCCGCTGCCCAACTTGCCCTGA

mRNA sequence

ATGGAGCAAATTAAGATTAGCCCTAATCTGTTTGTCGCCGCCGCTGCACATCCGCCAACCAGCCGACAACCATCTGCCGGAAAACTCTGTTTTGTCCTCCATTCAGCCGTCGACCCTTGCTCACCCACCTGCTTAGATCAGTTCTCAGCCTCAGCCTCTGTTCCAGATCTTAGATCTCTGCCTCAGCCTCTGATTCGTTCGCCTCAACCATTGCTTGCCCGCCTCAGCCATTGTTCGGCGAGGACTAGTTTTGTAGGCGAAACTGATACAGATCTACAGATATCTACGTCAACCTCTGTTCGTCCGCTATTCAAGGACATAGATACCCAGATCTCCATCTCTGTTCGTCCGCCATCGTCGACCGATACAAATCTCTGCGATCTCTACCTCAATCTCTGTTCGCCCACCGTGGGGCTCGAACCCACTCCTCCGATTCGTCAGCCTCTGTGCGTCCGCGAAGACCCATTCGTAGACATCCGTTCGTCAGCCTCTGTTCAACCGCCGCTGCCCAACTTGCCCTGA

Coding sequence (CDS)

ATGGAGCAAATTAAGATTAGCCCTAATCTGTTTGTCGCCGCCGCTGCACATCCGCCAACCAGCCGACAACCATCTGCCGGAAAACTCTGTTTTGTCCTCCATTCAGCCGTCGACCCTTGCTCACCCACCTGCTTAGATCAGTTCTCAGCCTCAGCCTCTGTTCCAGATCTTAGATCTCTGCCTCAGCCTCTGATTCGTTCGCCTCAACCATTGCTTGCCCGCCTCAGCCATTGTTCGGCGAGGACTAGTTTTGTAGGCGAAACTGATACAGATCTACAGATATCTACGTCAACCTCTGTTCGTCCGCTATTCAAGGACATAGATACCCAGATCTCCATCTCTGTTCGTCCGCCATCGTCGACCGATACAAATCTCTGCGATCTCTACCTCAATCTCTGTTCGCCCACCGTGGGGCTCGAACCCACTCCTCCGATTCGTCAGCCTCTGTGCGTCCGCGAAGACCCATTCGTAGACATCCGTTCGTCAGCCTCTGTTCAACCGCCGCTGCCCAACTTGCCCTGA

Protein sequence

MEQIKISPNLFVAAAAHPPTSRQPSAGKLCFVLHSAVDPCSPTCLDQFSASASVPDLRSLPQPLIRSPQPLLARLSHCSARTSFVGETDTDLQISTSTSVRPLFKDIDTQISISVRPPSSTDTNLCDLYLNLCSPTVGLEPTPPIRQPLCVREDPFVDIRSSASVQPPLPNLP

Homology

[Close]

BLAST of IVF0023864 vs. ExPASy TrEMBL
Match: A0A5A7T547 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00840 PE=4 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 8.0e-70
Identity = 144/167 (86.23%), Postives = 149/167 (89.22%), Query Frame = 0


Query: 7   SPNLFVAAAAHPPTSRQPSAGKLCFVLHSAVDPCSPTCLDQFSASASVPDLRSLPQPLIR 66
           SPNLFV AAA PPTSRQ SAGKLCFVLHSAVDPCSPTCLDQFSASASVPDLRSLPQPLIR
Sbjct: 222 SPNLFVTAAARPPTSRQSSAGKLCFVLHSAVDPCSPTCLDQFSASASVPDLRSLPQPLIR 281

Query: 67  SPQPLLARLSHCSARTSFVGETDTDLQISTSTSVRPLFKDIDTQISISVRPPSSTDTNLC 126
           SPQPLLARLSHCSARTSFV ETDTDLQISTSTSVR L KDIDTQISISVRP SSTDTNLC
Sbjct: 282 SPQPLLARLSHCSARTSFVDETDTDLQISTSTSVRLLLKDIDTQISISVRPSSSTDTNLC 341

Query: 127 DLYLNLCSPTVGLEPTPPIRQPLCVREDPFVDIRSSASVQPPLPNLP 174
           DLYLNLC PTVGL+PTPPIRQPL VRED  + I +S SV+ P  + P
Sbjct: 342 DLYLNLCPPTVGLKPTPPIRQPLFVRED--LAISTSISVRLPWGSNP 386

[Close]

BLAST of IVF0023864 vs. NCBI nr
Match: KAA0036575.1 (uncharacterized protein E6C27_scaffold191G00850 [Cucumis melo var. makuwa] >TYK22646.1 uncharacterized protein E5676_scaffold195G00840 [Cucumis melo var. makuwa])

HSP 1 Score: 270 bits (689), Expect = 1.25e-86
Identity = 143/162 (88.27%), Postives = 147/162 (90.74%), Query Frame = 0


Query: 7   SPNLFVAAAAHPPTSRQPSAGKLCFVLHSAVDPCSPTCLDQFSASASVPDLRSLPQPLIR 66
           SPNLFV AAA PPTSRQ SAGKLCFVLHSAVDPCSPTCLDQFSASASVPDLRSLPQPLIR
Sbjct: 222 SPNLFVTAAARPPTSRQSSAGKLCFVLHSAVDPCSPTCLDQFSASASVPDLRSLPQPLIR 281

Query: 67  SPQPLLARLSHCSARTSFVGETDTDLQISTSTSVRPLFKDIDTQISISVRPPSSTDTNLC 126
           SPQPLLARLSHCSARTSFV ETDTDLQISTSTSVR L KDIDTQISISVRP SSTDTNLC
Sbjct: 282 SPQPLLARLSHCSARTSFVDETDTDLQISTSTSVRLLLKDIDTQISISVRPSSSTDTNLC 341

Query: 127 DLYLNLCSPTVGLEPTPPIRQPLCVREDPFVDIRSSASVQPP 168
           DLYLNLC PTVGL+PTPPIRQPL VRED  + I +S SV+ P
Sbjct: 342 DLYLNLCPPTVGLKPTPPIRQPLFVRED--LAISTSISVRLP 381

The following BLAST results are available for this feature:

BLAST of IVF0023864 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023864 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T547	8.0e-70	86.23	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0023864 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0036575.1	1.25e-86	88.27	uncharacterized protein E6C27_scaffold191G00850 [Cucumis melo var. makuwa] >TYK2...	[more]

BLAST of IVF0023864 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023864.1	IVF0023864.1	mRNA