IVF0023835 (gene) Melon (IVF77) v1

Overview
NameIVF0023835
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionRNA-dependent RNA polymerase, mitoviral
Locationchr03: 20188587 .. 20188887 (+)
RNA-Seq ExpressionIVF0023835
SyntenyIVF0023835
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCCTATTATCCTCTCACCAGTTTCTGAATCCCCCGTCATCATAATAACATTCTCCAACTCGCGACCTAACCTTAATAAGCCCTTACTTGATCAAAAGTGCATTGTTAGCCAAAGAAAAACTCCCCAACCCTAAGGAAGATCTACAGTGCGTTCCTCCCCTTTCGTACACTGCTATACATATTTTCAAGAAGGAAGACGTGCATCTCGCTTGTAAACCCCAAAACCTAAGAATCCTTAAGTCATCTAAGGAACTAAAGAGGAGATTAGAGGTTAAGGTCAGGAAAAAGATGGTTTAA

mRNA sequence

ATGTTGCCTATTATCCTCTCACCAGTTTCTGAATCCCCCGTCATCATAATAACATTCTCCAACTCGCGACCTAACCTTAATAAGCCCTTACTTGATCAAAAGTGCATTGAAGATCTACAGTGCGTTCCTCCCCTTTCGTACACTGCTATACATATTTTCAAGAAGGAAGACGTGCATCTCGCTTGTAAACCCCAAAACCTAAGAATCCTTAAGTCATCTAAGGAACTAAAGAGGAGATTAGAGGTTAAGGTCAGGAAAAAGATGGTTTAA

Coding sequence (CDS)

ATGTTGCCTATTATCCTCTCACCAGTTTCTGAATCCCCCGTCATCATAATAACATTCTCCAACTCGCGACCTAACCTTAATAAGCCCTTACTTGATCAAAAGTGCATTGAAGATCTACAGTGCGTTCCTCCCCTTTCGTACACTGCTATACATATTTTCAAGAAGGAAGACGTGCATCTCGCTTGTAAACCCCAAAACCTAAGAATCCTTAAGTCATCTAAGGAACTAAAGAGGAGATTAGAGGTTAAGGTCAGGAAAAAGATGGTTTAA

Protein sequence

MLPIILSPVSESPVIIITFSNSRPNLNKPLLDQKCIEDLQCVPPLSYTAIHIFKKEDVHLACKPQNLRILKSSKELKRRLEVKVRKKMV
Homology
[Close]
BLAST of IVF0023835 vs. ExPASy TrEMBL
Match: A0A5D3CHB7 (RNA-dependent RNA polymerase, mitoviral OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001420 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.3e-12
Identity = 41/52 (78.85%), Postives = 45/52 (86.54%), Query Frame = 0 

Query: 37  EDLQCVPPLSYTAIHIFKKEDVHLACKPQNLRILKSSKELKRRLEVKVRKKM 89
           EDLQCVPP SYTAIHIFK+EDVHLACKP+N RI K SKELKRRLEV+  K +
Sbjct: 283 EDLQCVPPHSYTAIHIFKEEDVHLACKPRNSRIHKLSKELKRRLEVEAAKSV 334

[Close]
BLAST of IVF0023835 vs. NCBI nr
Match: TYK11283.1 (RNA-dependent RNA polymerase, mitoviral [Cucumis melo var. makuwa])

HSP 1 Score: 80.9 bits (198), Expect = 1.24e-15
Identity = 41/50 (82.00%), Postives = 44/50 (88.00%), Query Frame = 0 

Query: 37  EDLQCVPPLSYTAIHIFKKEDVHLACKPQNLRILKSSKELKRRLEVKVRK 86
           EDLQCVPP SYTAIHIFK+EDVHLACKP+N RI K SKELKRRLEV+  K
Sbjct: 283 EDLQCVPPHSYTAIHIFKEEDVHLACKPRNSRIHKLSKELKRRLEVEAAK 332

The following BLAST results are available for this feature:
BLAST of IVF0023835 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023835 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CHB72.3e-1278.85RNA-dependent RNA polymerase, mitoviral OS=Cucumis melo var. makuwa OX=1194695 G... [more]
BLAST of IVF0023835 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK11283.11.24e-1582.00RNA-dependent RNA polymerase, mitoviral [Cucumis melo var. makuwa][more]
BLAST of IVF0023835 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023835.1IVF0023835.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0001172 transcription, RNA-templated
molecular_function GO:0003968 RNA-directed 5'-3' RNA polymerase activity