IVF0023809 (gene) Melon (IVF77) v1

Overview
NameIVF0023809
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description60s ribosomal protein l2
Locationchr12: 1049424 .. 1049657 (-)
RNA-Seq ExpressionIVF0023809
SyntenyIVF0023809
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTGACTCGGAGACCTAG

mRNA sequence

ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTGACTCGGAGACCTAG

Coding sequence (CDS)

ATGACAATTGAGAGGTTCTCATTGAGCATTCCTAGTCACACGGGAAGAGAGGTCAAATGGCAAGGCCATATGCTCGTTTGGCTCTTCGTAGAGTATAGCTCACATCCAAACAAAGATCTGATTGGGGAATGGGGTAAGGCCCATAAAGCTCCAGTGGAAAGGGAAGGCCTACTAGCCCGTATGCTCATGGGTGCAGGACTCTTTGAAAAAGCGCCGGCTGACTCGGAGACCTAG

Protein sequence

MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET
Homology
[Close]
BLAST of IVF0023809 vs. ExPASy TrEMBL
Match: A0A5D3BBV8 (60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G001170 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.8e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
          MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR
Sbjct: 1  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60

Query: 61 MLMGAGLFEKAPADSET 78
          MLMGAGLFEKAPADSET
Sbjct: 61 MLMGAGLFEKAPADSET 77

[Close]
BLAST of IVF0023809 vs. ExPASy TrEMBL
Match: A0A5A7SUL2 (60s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00880 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.2e-29
Identity = 64/77 (83.12%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 1   MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
           +TIERFSLSIPSHTGREVKWQGH  VWL  EYSSHPNKDLIGE GKAHK P EREGL  R
Sbjct: 49  VTIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHKVPAEREGLPGR 108

Query: 61  MLMGAGLFEKAPADSET 78
           M MGAG FEKA ADSET
Sbjct: 109 MPMGAGFFEKARADSET 125

[Close]
BLAST of IVF0023809 vs. ExPASy TrEMBL
Match: A0A5D3BXG0 (Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001340 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.6e-24
Identity = 56/74 (75.68%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1   MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
           MTIERFSLSIPSHTGR+VKWQGHM VWL  EYS H NK+LIGEWGK  +A  EREGL   
Sbjct: 32  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGY 91

Query: 61  MLMGAGLFEKAPAD 75
           M MGAG FEKA AD
Sbjct: 92  MPMGAGFFEKARAD 105

[Close]
BLAST of IVF0023809 vs. ExPASy TrEMBL
Match: A0A4S8I504 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t00470 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.6e-12
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 1   MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
           +TI+R SLSIPSHTGRE+                  +K LIGE G AH+AP EREGL  R
Sbjct: 49  VTIDRLSLSIPSHTGREL-----------------TSKHLIGERGNAHEAPAEREGLPGR 108

Query: 61  MLMGAGLFEKAPADSET 78
           M MGAG FEKA ADSET
Sbjct: 109 MRMGAGFFEKARADSET 108

[Close]
BLAST of IVF0023809 vs. ExPASy TrEMBL
Match: A0A1J6J9A5 (60s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_1 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.4e-12
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 1   MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
           +TIER SLSIPSHTG+E+                  +K LIGE G AH+AP EREGL  R
Sbjct: 207 VTIERLSLSIPSHTGKEL-----------------TSKHLIGERGNAHEAPAEREGLPGR 266

Query: 61  MLMGAGLFEKAPADSET 78
           M MGAG FEKA ADSET
Sbjct: 267 MPMGAGFFEKARADSET 266

[Close]
BLAST of IVF0023809 vs. NCBI nr
Match: KAA0031822.1 (60s ribosomal protein l2 [Cucumis melo var. makuwa] >TYJ97312.1 60s ribosomal protein l2 [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 6.03e-51
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
          MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR
Sbjct: 1  MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60

Query: 61 MLMGAGLFEKAPADSET 77
          MLMGAGLFEKAPADSET
Sbjct: 61 MLMGAGLFEKAPADSET 77

[Close]
BLAST of IVF0023809 vs. NCBI nr
Match: KAA0032895.1 (60s ribosomal protein l2 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (334), Expect = 1.27e-37
Identity = 64/77 (83.12%), Postives = 65/77 (84.42%), Query Frame = 0 

Query: 1   MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
           +TIERFSLSIPSHTGREVKWQGH  VWL  EYSSHPNKDLIGE GKAHK P EREGL  R
Sbjct: 49  VTIERFSLSIPSHTGREVKWQGHTPVWLLAEYSSHPNKDLIGERGKAHKVPAEREGLPGR 108

Query: 61  MLMGAGLFEKAPADSET 77
           M MGAG FEKA ADSET
Sbjct: 109 MPMGAGFFEKARADSET 125

[Close]
BLAST of IVF0023809 vs. NCBI nr
Match: KAA0051145.1 (ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2 [Cucumis melo var. makuwa])

HSP 1 Score: 116 bits (290), Expect = 1.14e-31
Identity = 56/74 (75.68%), Postives = 59/74 (79.73%), Query Frame = 0 

Query: 1   MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
           MTIERFSLSIPSHTGR+VKWQGHM VWL  EYS H NK+LIGEWGK  +A  EREGL   
Sbjct: 32  MTIERFSLSIPSHTGRKVKWQGHMPVWLIAEYSLHLNKNLIGEWGKTREALAEREGLPGY 91

Query: 61  MLMGAGLFEKAPAD 74
           M MGAG FEKA AD
Sbjct: 92  MPMGAGFFEKARAD 105

[Close]
BLAST of IVF0023809 vs. NCBI nr
Match: XP_030519441.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC115732897, partial [Rhodamnia argentea])

HSP 1 Score: 84.0 bits (206), Expect = 1.73e-17
Identity = 46/74 (62.16%), Postives = 50/74 (67.57%), Query Frame = 0 

Query: 5   RFSLSIPSHTGREVKWQGHMLVWLFVEYS-SHPNKDLIGEWGKAHKAPVEREGLLARMLM 64
           + SLSIPSHTGREVKWQG  +       S +H    L GE G AH+AP EREGL  RM M
Sbjct: 156 KLSLSIPSHTGREVKWQGKAIRPFGSSRSIAHIQXHLSGERGNAHEAPAEREGLPGRMPM 215

Query: 65  GAGLFEKAPADSET 77
           GAG FEKA ADSET
Sbjct: 216 GAGFFEKARADSET 229

[Close]
BLAST of IVF0023809 vs. NCBI nr
Match: THU42354.1 (hypothetical protein C4D60_Mb00t00470 [Musa balbisiana])

HSP 1 Score: 79.0 bits (193), Expect = 7.00e-17
Identity = 44/77 (57.14%), Postives = 49/77 (63.64%), Query Frame = 0 

Query: 1   MTIERFSLSIPSHTGREVKWQGHMLVWLFVEYSSHPNKDLIGEWGKAHKAPVEREGLLAR 60
           +TI+R SLSIPSHTGRE+                  +K LIGE G AH+AP EREGL  R
Sbjct: 49  VTIDRLSLSIPSHTGRELT-----------------SKHLIGERGNAHEAPAEREGLPGR 108

Query: 61  MLMGAGLFEKAPADSET 77
           M MGAG FEKA ADSET
Sbjct: 109 MRMGAGFFEKARADSET 108

[Close]
BLAST of IVF0023809 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 57.8 bits (138), Expect = 4.6e-09
Identity = 28/38 (73.68%), Postives = 29/38 (76.32%), Query Frame = 0 

Query: 40  LIGEWGKAHKAPVEREGLLARMLMGAGLFEKAPADSET 78
           LIGE G  H+AP EREGL  RM MGAG FEKA ADSET
Sbjct: 331 LIGERGNTHEAPTEREGLPGRMPMGAGFFEKARADSET 368

The following BLAST results are available for this feature:
BLAST of IVF0023809 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023809 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3BBV82.8e-38100.0060s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7SUL25.2e-2983.1260s ribosomal protein l2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
A0A5D3BXG08.6e-2475.68Ribosomal protein L2 (Mitochondrion) OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A4S8I5042.6e-1257.14Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb00t00470 PE=4 SV=... [more]
A0A1J6J9A53.4e-1257.1460s ribosomal protein l2, mitochondrial OS=Nicotiana attenuata OX=49451 GN=RPL2_... [more]
BLAST of IVF0023809 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0031822.16.03e-51100.0060s ribosomal protein l2 [Cucumis melo var. makuwa] >TYJ97312.1 60s ribosomal pr... [more]
KAA0032895.11.27e-3783.1260s ribosomal protein l2 [Cucumis melo var. makuwa][more]
KAA0051145.11.14e-3175.68ribosomal protein L2 [Cucumis melo var. makuwa] >TYK03754.1 ribosomal protein L2... [more]
XP_030519441.11.73e-1762.16LOW QUALITY PROTEIN: uncharacterized protein LOC115732897, partial [Rhodamnia ar... [more]
THU42354.17.00e-1757.14hypothetical protein C4D60_Mb00t00470 [Musa balbisiana][more]
BLAST of IVF0023809 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G07715.14.6e-0973.68Nucleic acid-binding, OB-fold-like protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023809.1IVF0023809.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005840 ribosome