IVF0023775 (gene) Melon (IVF77) v1

Overview
NameIVF0023775
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr12: 4526442 .. 4536242 (+)
RNA-Seq ExpressionIVF0023775
SyntenyIVF0023775
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCCTAACACGTTTTCTCGAGGTATAGGTCGGGAAAAGAGCTCGTTGGTGGGGGAACTGTGGTGCAACCTAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGTTGGTCTGGTGTTAGAAAGCACTGGAAATACACTTGTAGCGAAGGAAATGGGATGAGCTCGAGGTCTTTCGGTGCTCGTCCCAAGAAAATGCGATCGAGAATGCCCGGACTCAGTTTTCTTGTCCTGGGGTAAAAATCGGTCCCTCGACGGTTTTTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCTGAGGACTTCAACCCACGCTCCTGGCATGCTCCCTGACACGTTTTCCATGGGTATATGTCGAGAAGCGACTTCGTTGGAGGGAGAACTGTGGTGCGATCCAAAACGGTCCAAAAGATGGCGAATGCTTCCAACGAGTGGCGAACGCTCGTCTGAGGTCAGAAACCATAAGAAATGCACTTGCATCAAAGGAAACGGGTCGAGCTCGAGGACTTTCGGTGCTCGTCCCAAGAAAATGCGATCGAGAATGCCCCAGACTCAGTTTTCTTGTCCTGAGGTAAAACGCTGTCCCCTGACGGCTTGTTTCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGACTCGTGCTCCGAAGACTTCAACACACACTCCTGGCATGCTTCCTGAAACATTTTCCTAAGATCTTGGTCGGGAAGTGAGCTCGTTGGAGGGAGAACTGTGGTGCGATACAAAACGGTCCAAAAGATAGCCAATGCTTCCAACGAGTGGCGAATGCTCGTTTGAGGACATAAACCACTGGAAATGCACTTGCAGCGTAGGAAACGGGCCGAGCTCGAGGACTTCAAGTGCTCGTCCCAAGAAAATGCAAGCGAGAATGCCCAGACTCAGTTTTCTCGTTTGGGGTAAAAACCGGTCCCTCGACGATTTTTTCCTTTGGCTCCGTATTGGTCATAAGTCTTTCGATCTTTGGGGCTCGTGCTCCGAGGACTTCAACCCACACTCCTCGCATGCTCCCTAATACGTTTTCCCATGTTATAGGTCGGGAAGCGAGCTCGTTAGACGGAGAACTGTGGTGCGACCCAGAACGGTCCAAAAGATGCCCAATGCTTCCAACGAGTGTCGAACGTTCGTCCGATGAAAGAAACCACAGGATATGCACTTGCAGTGAAGGAAACGGGCTGAGCTCAAGGACTTTCGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGTCCCAGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCAGTACCCCGACGGTTTCTTCCCTTTGCTCCGTATTAGTCATTAGTCTTCTAATATTCGGGGCTCGTGCTCTGAGGACATCAACCCAAACTTCTGGCATGCTGCCTGACATGTTTTCCCAAGTTATAGATCGGGAAACGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAATAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCAGTGTCAGAAACCACTAGAAATGCACTTGCAGCGAAGGAAACAGGCTAAATTTGAGGACTTCCGGTGCTTGTCCCAAGAAAACGCGAGCAAGAATGCCCCGGATTCAGTTTTCTCGTCCTAGGGGAAAAAACGATCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTCATATGTCTTTTAATCTTCGGGGCTCATGTTCTGAGGACTTCAACCCACACTCCTGGCATCCTCCCTGACACGTTTTCCAAGGTATAGGTTGGGAAGCGAGCTCGTTGGAGGGAGAACCGTGGTGCGACCCAAAAAGGTCCAAAAGATGGCCCATGCTTCCAACAAGTGGCAAACACTCGACCGGTGTTAGAAACAACTGGAAATGCAGTTGCAGCGAAGGAAACAGGCTGAGCTCGAGGACTTCTGATGCTTGTCCCAATAAAATGCGAGCGTGAATGCTCCGGACTCACTTTTCTCGTGCTAGGGTAAAAAGCGGTCCCCGACGGTTTCTTCCTTTGCTTCGTATTGGTCATAAGTCTTCGATCTTTGGGGCTCGTGCTCCGAGGACTTCAACCCACACTCCTGGTATGCGCCCTGACATGTTTTCCCATGTTATAGGTCGAGAAGCGAGCTCGTTGGAGGGAGAAATGTGGTGCGACCCAAAACGGTCGAAAAGATGACCAATGCTTCCAACGAGTAGCGAACTCTCGTCCGGTGAAAGAAACCACTGGAAATTTAATTGCAGCGAAGGAAATGGGCTGAGCTCGAAGACTTCTGCTGCTCGTCCCAAGAAAACGTAAGTGAGAATGCCCCGGACTCAGTTTTCTCGTCCTGGCATAAAAAGCGGTCCTCGACCGTTTCTTCCCTTTGCTCTGTATTGGTCATAAGTCTTTCGATCTTTGAGGCTAGTGCTCCGAGGACTTCAACCAACACTCCTGGCATGCTCCCTTACACGTTTTACCATATTATAGATCAAGAAGCGAGCTTGTTGGAGGGAGAACTGTGGTGCGACCCAGAACGATCTAAAGATGGCCAATGCTTCAAAGAGTGTCGAACGCTCGTTCAGTGAAAGAAACCACTGGATATGAACTTGCAGTGAAGGAAGCGGGCTGAGCTCAAGGACTTCCGGTGCTCGTCCTAAGAAAACGTGAGCGAGAATGCCCCGGACATAGTTTTCTCGTCTTGGGGTAAAAAGCGGTACCTGACGGTTTTTCCCTTTGCTCCGTATTGGTCATTAGTCTTCTGATATTCGGGGCTCGTGCTCCGAGGACATCAACCCACACTCCTGGCATGCTCCCTGACATGTTTTCCAAAGTTATAGGTCGGGAAACGAGCTCGTTAGAGGGAGAACTGTGGTGCGACCCAAAACTGTCCAAAGATGGCTAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACATGCAATTAAGGAACAGGTGAGCTCAAGGACTTCCGATGCTCGTCCTAAGAAAACGTGAGCGAGAATGCCCCGGACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGGTACCCCGACGGTTTCTTACGTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCGAGGACTCAACCGACACTCCTGGCATGCTCCCTGACACGTTTTTCCAAGGTATAGGTCGGAAGCGAGCCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCTGGTGTCAGAAACCACTTGAAATGCACATGCAACGAAGGAAAAGGTTGAGTTCGAGGACTTTCGGTGCTTGTCCAAAGAAAAGGCAAGCGAGAATGCCCCGGATGCAGTTTTCTCGTCCCGGGGGAAAAAGCAATCCCCGACGGTTTCTTCCCTTTGCTTGTATTGGTCATAAGTCTTTCGATCTTCGGAGCTCGTACTCCGTGGACTTCAACCGACACTCTTGGCATGCTTCCTGACACGTTTTCCAAGTTATAGGTTGGGAAGCGAGCTCGATGGAGGGATAAGTGTTGTGCAACCCAAAACGGTCCAAAAGATAGCCAATGGTCCAATGAGTGGCGAACGCTCGTTCGGTGAAAGAAACCACTAGAAATGCACTTGTAGCGAAGGAAACGGCTGATCTCGAGGACTTCCGGTGCTCGTCCCAAGAAAACGTAAGTGAAAATGCCTAGAACTCAGTTCTCTCGTCATATGGTAAAAGCGGTCTCCGACGGTTTCTTCGCTTTACTCCGTATTGGTCATAAGTCTTTCGATTTTTGGGGCTCGTGCTCCAAGGACTTCCACCCATACTCTTGGCATGCTCCCTGACCAGTTTTCCCAAGGTATAGGTCAGGAAGCGAACTCGTTGGAGAGAGAACTGTGATGCAGCCCAAAACGGTCCAAAAGATGGCCAATGCTTTCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAAACCACTGAAAATGCATTTGCAGTGAAGGAAACAGGCTGAGCTCGAGGACTTCTGGTGCTCGTCCCAAGAAAACGCGAGCGAGAATGGCCCGGACTCAGTTTCTTGACCTCGGTAAAAAGCGGTTCCCTACGGTTTCTTCCCTTTGCTCCTTATTGGTCATAAGTCTTTCGATCTTTGGGGCTAGTGCTCCGAGGACTTCAACCCACACCCCTGGCATACGCCCTGACATGTTTTCCCATGGTATAGGTCGGGAAGCGAGCTCGTTGGAAAGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTTCAATGAGTGGCGAACGCTCGTCCAGTGAAAGAAACCACTGGATATGCACTTGCAGGGAAGGAAATGGGCTGAGCTGAAGCACATTCTGGTGCTGGTCCCAGGAAAACGTGAGCGAGAATGCCTGGACTCAGTTTTCTTGTCCTGGGGTAAAAAGCAGTCCTCCGATGGTTTCTTCCCTTTGTTCTGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCTAAGGACTTCAACCCATACTCCTGGCATGCTTCTGACACGTTTTTCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGATTGTGGTGTGACCCAAAACGATCCAAAAGATGGAAATGCACTTGCAACGAAGGAAATGGGCTGAGCTCGAGGACTTCCGATGCTCGTCCCAAGAAAACGGAGCGAGATTGCCCGAGAGTTAGTTTCCTCTTCCTGGGTAAAAAGCAGTCCCCCGACTGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCAATCTTCTGGGCTCGTGCTTGGAGGACTTCAATCCACACTCTGACATGCTCCCTACACGTTTTTCCATGTTATAGGTCGAGAAGCGAGCTCGTTGGAGGGAGAACTATGGTGCGACCCAAAACGGTAAATAGATAGCAAATGCTTCCAACGAGTGGCGAATACTCGTCCGGTGTCAGAAACCACTGGAAGTGCAGTGGAGCGAAGGAAATGGGCTGAGCTTGAGGAATTCTGGTGCTCGTCCCAGAAAACGGGAGCGAGAATGCACGGACTCAGTTTTCTCATCCTGGGGTAAAAAGCGGTCCCCCGACGGTTTTTTCCCATTGCTCCGTATTGATCATAAGTCTTACAATCTTCGGGCTCGTTCTCCAAGGACTTCAATCACACTCCTGGCAGCTCCCCGACACGTTTTCCCAAAGTATAGGTCGGGAAGCGAGCTCGTTGGAAGGAGAACTGTGGTGCGACCCGAAACGGTCCAAAATATGGCCAATGCTTCCAACGAGTGGCGAATGCTCGTTCGGTGTCAAAAACCAATTGAAATGCACTTGCAGCGAAGGAAACAGGCTGAGCTTGAGGACTTCCGTGCTCGTCCCCAGAAACGCGAGCGAGAGTGCCCCGGACTCAGTTTTCTCGTCCAAGGGTAAAAAGCGGTCCCCCGACGGTTTCTTCCCTTTGCTCCGTATTGGTAATAAGTCTTTCGATCTTCGGGGATCGTGCTCCGAGGACTTCAACCCACACTCATGGCATGCTCCCTGACCCATTTTTCCAAGGTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAACTTTGGTATGACTCAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACGCTCGTCTGGTGTCAGAAACCACTGGAAATACACTTGCAGCGAAGGAAACAGGCTAAGCTCGGGGACTTCCGGTGCTCGTCCCCAGAACACGCGAGCGAGAGTGTCCGGGACTCAGTTTTCTCCTCATAGGGTAAAAAGTGATCCCTCGACTGTTTCTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTTGATTTCGGGGCTCGTGCTCGGAGGGACTCAACTTCCACCCACACCTGACATGCTCCCGACACGTTTGCCCATGTTATAGGTCGAGAAGCGAGCTCGTTGGAGAGAGAATTGTTGTGCGACCCAAAATGGTCCAAAAGATGGCCAATGCTTCCAACGAGTAGCGAAGGCTCGTTCGGTGTCAGAAACCACTGGAAATGCACTTGCAACGAAGGAAACATGCTGACCTTGATGACTTCTGGTGCTCTTCCCAACAAAACACGAGCGAGAATGCCCCATACTGAGTTTTCTCGTCCTGGGGTAAAAAGCTGTCCCCCGACGGATTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTCCGATCTTCGGGGCTCGTGCTCCGAGGACTTTAACCCATAGTCCTAGCATGCTCCCTGACACGTTTTTCAAAGATATAGGTTGGGAAGTGAGCTCGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTCCAAAAGATGGCCATGTTCCAACGAGTGGCGAACGCTCGTCCGGTGTTAGAAACCACTGGAAATGCACTTGTAGTGAAGGAAACGGGCTGAGGTCGAGGACTTATTGTGCTCCTCCAATGAAAACGTGAGCGTTAATGCTCCGGACTCAGTTTTCTCGTCCTGGGGCAAAAAGCGATCCCCCGATGGTTTCTTCCCTCTGCTACGTATTGGTCATATGTCTTTCAATCTTCGGGGCTCGTGCTCCGAGGACTTTACCGACACTCCTGGCATGCTCCCTGACACCTTTTCCTAAGGTATAGGTTGGGAAGCGAGCTCGTTGGTGGGAGAATGAGGTGCGACCCAAAATGGTCCAAAAGATGACCAATGCTTCAACGAGTGGCGAAGGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCAAAGGAAACGGGCTGAGCTCGAGGACTTGTGGTGCTCGTCCAACAAAACGCGTGCGAGAATGCTCTGGACTCAGTTTTCTTGTCGTGGGGTAAAAAGCGGTCCCCCGACGATTTCTTCCCTTTGCTCCGTAATGGTCATAAGTTATTCAATCTTCAGGGCTCATGCTCGAAGGACTTCAACCCACACTCCTAGTATGCTCTCTGACACGTATTCCTATGTTATAGATCGGGAAGCAAGCTAGTTGGAGGGAGAACTGTGGTGCGACCCAAAACGGTAAATAGATGGCGAATGCTTCGAACGAGTGGCGAATGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACAGGCTGAGCTTGAGGACTTCCGGTGCTCGTCCACAAAAAACGCGAGCGAGACAGCCCCATACTCAGTTTTCTCGTCATGGGGAAAAAGCGGTCCCCGATGGTTTCTGCTTTTGCTTTGTATTGGTCATAAGTCTTTCTATCTTTGGGGCTCGTGCTCTGAGGACTTCAAACCTACACTCCTGGCATGCTCCCTGACACGTTTTTCAAGGTATAGGTCGGGAAGCGAGCTCATTGGAGGGAGAACTTTGGTGCGACCCAAAACTGTACAAAAGATGGCAATGCTTTCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATACACTTGCAGCGAAGGAAACAGGCTGAGCTCGAGGACTTTTGGTGCTCGTCCCCAAAAAACGTGAGCGAAAGTGCCCGGTCTCAGTTTTCTCCTCCTTGGGTAAAAGTGAACCCCGATGGTTCGTCCCTCTGCTCCGTATTGTTCATAAGTCTTTCGATCATCGGGTCTCGTGCTCCGAGGACTTCAACCCACACTCTAGGCATGCTCCCTGACACGTTTTTCCAAGGTATAGGTGGGGAAGCGAGCTCGTTGGAGGGAGAACTGTGGTGTGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGTGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGGAAAGGAAACGGGATGAGCTCGAGGACTTTCGGTGCTCGTCCCCTGAAAACGCGAGCGAAAGTGCCCTAAACTCAGTTTTCTCCTCTTGGGGTAAAAAGCTGTCCCATACGGTTTCTTCACTTTGCTCCGTATGGTCATAAATCCTTCGATCTTTGGGGCTCGTGCTTTGAGCACTTCAACCCACAATTTTGCATTGCTCCCTGACACGTTTTCTCAAGGTATAGTTCGGGAAGCGAGTTCGTTGGAGGGAGAACTGTGGGATAACCCAAAACAGTCTAAAAGACGGCCAATGCTTCAGACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCTGGTGCTCGTCCCAAGAAAATGCTAGCGAGAATACCCCGGACTCAGTTTTCTCTTCCTGGGGTAAAAGCGATCCCTCGACGGTTTCTTCCATTTGCTCCGTATTGGTCATAAGTCTTTCGAGCTTCGGGGCAAGTGCTCCGAGGAATTCAACCCACACTCCTAGCATGCTCTCTGATATGTATTCCCATGTTATAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAGCTGTGGTGCGACCCAAAACGGTCCAAAAGAATGCCAATGCTTCCAACGAGTGGAGAACGCTCGTCCAGTGTTAGAAACCACTGGAAATGCACTTGCAGCGAAGGAAACGGGCTGAGCTCGAGGACTTCTGGTGCTCGCCCCAAGAAAAACATGAGGGAGAAAGCACCGGACTCAGTTTTCTCGTCCTGGGTAAAAAGCGGTCCCCCGACATTTCTTCCCTTTGCTCCGTATTGATCATAAGTCTTTCGATCTTCAGGGTTCGCGCTCCAAGGACTTCGACCCACACTCCTAACATGCTCCTTGACACGTTTTCCCAAGTTATAGGTTGGGAAGCGAGCTCATTGGAGGGAGAACTGTGGTGCGATCCTAAATGATAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCGGTGTCAGAAACCACTTGAAATGCACTTGCAACGAAGGAAACGGGCTGAGCTCGAGGACTTCCCGTGCTCGTCCAAAGAAAACGCGAGCGAGAATGCCCCATACTCAGTTTTCTCGTCTTGGGGTAAAAAGCGGTCCTCCGATGGTTCTTCCCTTTGCTCCGTATGGTCATGTCTTATGATCTTCAGGGCTCATGCTTCGAGGACTTCAACCCACAGTCCTGGCATGCTCTCTGACACGTTTTACAAGGTGTAGGTCGGGAAGCGAGCTCGTTGGAGGGAGAATTGTGGTGCGACCCAAAATGGTCCAAAAGATAGCCAATGCTTCCAACGAGTGGCGAACCCTCGTTCGGTGTTAGAAACCACTGGAAATGCAGTTGCAGTAAAAGAAACGGGCTGAGCTCGAGGAATTTCGACGCTCTTCCCAAGGAAAATGCGAGCGAGAATGCCTCGGACTCCGTTTTCTCGTCTTGGGTAAAAAGCGGTACCCCAACGGTTTCTTCCCTCTACTCTGTAGTGGTCATAAGTCTTTCGATCTCCGGGGCTCGTGCTCCGAGAACTTTAAGCCACACTCCTGGCATGCTCCTTGACACGTTTTCCCACAGTATAAGTCGTGAAGCGAGCTCGTCTGATGTCCGAAACCACTGGAAATGCACTTGTAGCGAAGTTAACGGGCTGAGCTCGAGGAGCTCTTGTGCTCGTTCCAAGAAAACGCGAGCAAAACGCCCCGGATTCAGTTTTCTTGTCGTGGGCTAAAAGGCGGTCCCTCGACGGTTTCTTCCCTTTGCTTCGTATTGATCATAAGTCTTTCGATCTTCGGGGCTCGCACTCCAAGGACTTCGACCCACACTCCTGACATGCTCCTTGACATGTTTTCCCAAGTTATAGGTCGGGAAGCAAGCTCGTTGGAGGGAGAACTGTGCTGCGACCCTAAACGATAA

mRNA sequence

ATGCTCCCTAACACGTTTTCTCGAGGTATAGGTCGGGAAAAGAGCTCGTTGGTGGGGGAACTGTGGTGCAACCTAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGTTGGTCTGGTGTTAGAAAGCACTGGAAATACACTTGTAGCGAAGGAAATGGGATGAGCTCGAGGTCTTTCGGTTTTTCTTGTCCTGGGGTAAAAATCGGTCCCTCGACGGTTTTTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCTGAGGACTTCAACCCACGCTCCTGGCATGCTCCCTGACACGTTTTCCATGGGGCTCATGCTTCGAGGACTTCAACCCACAGTCCTGGCATGCTCTCTGACACGTTTTACAAGGTGTAGTAAAAGAAACGGGCTGAGCTCGAGGAATTTCGACGCTCTTCCCAAGGAAAATGCGAGCGAGAATGCCTCGGACTCCGTTTTCTCGTCTTGGGTAAAAAGCGGTACCCCAACGGTTTCTTCCCTCTACTCTGTAGTGGTCATAAGTCTTTCGATCTCCGGGGCTCGTGCTCCGAGAACTTTAAGCCACACTCCTGGCATGCTCCTTGACACGTTTTCCCACAGTATAAGTCGTGAAGCGAGCTCGTCTGATGTCCGAAACCACTGGAAATGCACTTGTAGCGAAGTTAACGGGCTGAGCTCGAGGAGCTCTTGTGCTCGCGGTCCCTCGACGGTTTCTTCCCTTTGCTTCGTATTGATCATAAGTCTTTCGATCTTCGGGGCTCGCACTCCAAGGACTTCGACCCACACTCCTGACATGCTCCTTGACATGTTTTCCCAAGTTATAGGTCGGGAAGCAAGCTCGTTGGAGGGAGAACTGTGCTGCGACCCTAAACGATAA

Coding sequence (CDS)

ATGCTCCCTAACACGTTTTCTCGAGGTATAGGTCGGGAAAAGAGCTCGTTGGTGGGGGAACTGTGGTGCAACCTAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGCGAACGTTGGTCTGGTGTTAGAAAGCACTGGAAATACACTTGTAGCGAAGGAAATGGGATGAGCTCGAGGTCTTTCGGTTTTTCTTGTCCTGGGGTAAAAATCGGTCCCTCGACGGTTTTTTCCCTTTGCTCCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTGCTCTGAGGACTTCAACCCACGCTCCTGGCATGCTCCCTGACACGTTTTCCATGGGGCTCATGCTTCGAGGACTTCAACCCACAGTCCTGGCATGCTCTCTGACACGTTTTACAAGGTGTAGTAAAAGAAACGGGCTGAGCTCGAGGAATTTCGACGCTCTTCCCAAGGAAAATGCGAGCGAGAATGCCTCGGACTCCGTTTTCTCGTCTTGGGTAAAAAGCGGTACCCCAACGGTTTCTTCCCTCTACTCTGTAGTGGTCATAAGTCTTTCGATCTCCGGGGCTCGTGCTCCGAGAACTTTAAGCCACACTCCTGGCATGCTCCTTGACACGTTTTCCCACAGTATAAGTCGTGAAGCGAGCTCGTCTGATGTCCGAAACCACTGGAAATGCACTTGTAGCGAAGTTAACGGGCTGAGCTCGAGGAGCTCTTGTGCTCGCGGTCCCTCGACGGTTTCTTCCCTTTGCTTCGTATTGATCATAAGTCTTTCGATCTTCGGGGCTCGCACTCCAAGGACTTCGACCCACACTCCTGACATGCTCCTTGACATGTTTTCCCAAGTTATAGGTCGGGAAGCAAGCTCGTTGGAGGGAGAACTGTGCTGCGACCCTAAACGATAA

Protein sequence

MLPNTFSRGIGREKSSLVGELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSSRSFGFSCPGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGMLPDTFSMGLMLRGLQPTVLACSLTRFTRCSKRNGLSSRNFDALPKENASENASDSVFSSWVKSGTPTVSSLYSVVVISLSISGARAPRTLSHTPGMLLDTFSHSISREASSSDVRNHWKCTCSEVNGLSSRSSCARGPSTVSSLCFVLIISLSIFGARTPRTSTHTPDMLLDMFSQVIGREASSLEGELCCDPKR
Homology
[Close]
BLAST of IVF0023775 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 1.6e-52
Identity = 151/325 (46.46%), Postives = 176/325 (54.15%), Query Frame = 0 

Query: 1   MLPNTFSRGIGREKSSLVGELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSS 60
           ML + F +GIGR+ SSL  EL C+ KRSKRWPML   GER  GVR HWK TC+E N +SS
Sbjct: 297 MLLDMFCQGIGRDASSLQRELRCDPKRSKRWPMLRMRGERSYGVRNHWKSTCNERNRLSS 356

Query: 61  RSFGFSCPGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGMLPDTFSMGLMLRGLQ 120
           R+F                      +   I  AR  RTSTH PGMLP+TFS G+   G +
Sbjct: 357 RTFD---------------------VRHKITQARTPRTSTHTPGMLPNTFSQGI---GRE 416

Query: 121 PTVLACSLTRFTRCSKRNGLSSRNFDALPKENASENASDSVFSSWVKSGTPTVSSLYSVV 180
            ++L   L      SKRN LSSRN    PK+       DSVFSSW K+ + TVSSLY ++
Sbjct: 417 ASLLEGEL------SKRNRLSSRNSGVRPKK------MDSVFSSWSKTWSQTVSSLYFLL 476

Query: 181 VISLSISGARAPRTLSHTPGMLLDTFSHSISREAS------------------------- 240
           VISL I GA  PRT +HT  ML D FS  I REAS                         
Sbjct: 477 VISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTSGEL 536

Query: 241 SSDVRNHWKCTCSEVNGLSSRSSCARGPSTVSSLCFVLIISLSIFGARTPRTSTHTPDML 300
           SS VRN+WK TCSE N L SR+S      T++ +               PRT THTP ML
Sbjct: 537 SSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQF--------PRPRTLTHTPGML 577

[Close]
BLAST of IVF0023775 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 2.4e-45
Identity = 146/330 (44.24%), Postives = 164/330 (49.70%), Query Frame = 0 

Query: 65   FSCPGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGMLPDTFSMGLMLRGLQPTVL 124
            F  PG K GP T+ SLCSVLVISL IF AR LRTSTH PGM+ DTF  G+   G + + L
Sbjct: 1289 FFRPGEKCGPPTISSLCSVLVISLPIFRARTLRTSTHTPGMVSDTFFGGI---GWEASWL 1348

Query: 125  ACSLTRFTRCSKRNGLSSRNFDALPKENASENASDSVFSSWVKSGTPTVSSLYSVVVISL 184
               L         NGLSS+   A P +  +            KSG PTVSSL SV+VISL
Sbjct: 1349 EGELCEV------NGLSSKISSARPMKTRARMPRTQFSRPGAKSGPPTVSSLCSVLVISL 1408

Query: 185  SISGARAPRTLSHTPGMLLDTFSHS----------------------------------- 244
            SI GAR  RT +HT GML DTFS                                     
Sbjct: 1409 SIFGARTLRTSTHTSGMLPDTFSGETTGNALQRSKRPELKDFRCSSQENANEIAPDSIFS 1468

Query: 245  --------------ISREAS-------------------------SSDVRNHWKCTCSEV 301
                          + REAS                         SS VRNHWKCTCSE 
Sbjct: 1469 SLSKKRSPDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGVRNHWKCTCSEG 1528

[Close]
BLAST of IVF0023775 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 5.7e-31
Identity = 110/259 (42.47%), Postives = 120/259 (46.33%), Query Frame = 0 

Query: 26  KRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSSRSFG--------------FSCPGVK 85
           K  +RWPMLPTSGER SGVR  WK TC EGNG+SSR+ G              FS PG K
Sbjct: 250 KTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSSRTSGARPKKTRARMPQTQFSRPGPK 309

Query: 86  IGPSTVFSLCSVLVISLSIFGARALRTSTHAPGMLPDTFSMGLMLRGLQPTVLACSLTRF 145
             P TV +LCSVLV SLSIFGA   RTSTH PGMLPDTFS              C    F
Sbjct: 310 SDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFS-----------ERECPRLSF 369

Query: 146 TRCSKRNGLSSRNFDALPKENASENASDSVFSSWVKSGTPTVSSLYSVVVISLSISGARA 205
               K                            W   G      L  +   S+ + G+  
Sbjct: 370 LVLGK---------------------------LWSPDG---FFPLLRIGHKSVDLRGS-T 429

Query: 206 PRTLSHTPGMLLDTFSHSISREAS-------------------------SSDVRNHWKCT 246
           PRT +HT GML DTFS  I REAS                         SS  RNHWKCT
Sbjct: 430 PRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRWPMLPTGGERSSGFRNHWKCT 466

[Close]
BLAST of IVF0023775 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.9e-24
Identity = 70/126 (55.56%), Postives = 79/126 (62.70%), Query Frame = 0 

Query: 1   MLPNTFSRGIGREKSSLVGELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSS 60
           MLP+ F++GIGRE SSL GELW + KR KRWPML TSGER SGVR HWK TCS  N +SS
Sbjct: 46  MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSS 105

Query: 61  RSFG--------------FSCPGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGML 113
           R+ G              FS P  K  P  V SLCSVLVISLSIFGA   RTS     +L
Sbjct: 106 RTSGVCPMKTRPRMSRTQFSRPRAKSDPPMVSSLCSVLVISLSIFGACTPRTSRPTYPLL 165

[Close]
BLAST of IVF0023775 vs. ExPASy TrEMBL
Match: A0A5A7VGB1 (Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G001130 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.2e-21
Identity = 56/80 (70.00%), Postives = 60/80 (75.00%), Query Frame = 0 

Query: 1   MLPNTFSRGIGREKSSLVGELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSS 60
           MLP+TFS GIGRE SSL GELWC+ KRSKRWP LPTSGER SGVR HWK TCSEGNG+SS
Sbjct: 179 MLPDTFSGGIGREASSLEGELWCDPKRSKRWPKLPTSGERSSGVRNHWKCTCSEGNGLSS 238

Query: 61  RSFGFSCPGVKIG-PSTVFS 80
           R+ G        G P T FS
Sbjct: 239 RTSGARPKKTPAGMPRTQFS 258

[Close]
BLAST of IVF0023775 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 214 bits (544), Expect = 1.11e-59
Identity = 151/325 (46.46%), Postives = 176/325 (54.15%), Query Frame = 0 

Query: 1   MLPNTFSRGIGREKSSLVGELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSS 60
           ML + F +GIGR+ SSL  EL C+ KRSKRWPML   GER  GVR HWK TC+E N +SS
Sbjct: 297 MLLDMFCQGIGRDASSLQRELRCDPKRSKRWPMLRMRGERSYGVRNHWKSTCNERNRLSS 356

Query: 61  RSFGFSCPGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGMLPDTFSMGLMLRGLQ 120
           R+F                      +   I  AR  RTSTH PGMLP+TFS G+   G +
Sbjct: 357 RTFD---------------------VRHKITQARTPRTSTHTPGMLPNTFSQGI---GRE 416

Query: 121 PTVLACSLTRFTRCSKRNGLSSRNFDALPKENASENASDSVFSSWVKSGTPTVSSLYSVV 180
            ++L   L      SKRN LSSRN    PK+       DSVFSSW K+ + TVSSLY ++
Sbjct: 417 ASLLEGEL------SKRNRLSSRNSGVRPKK------MDSVFSSWSKTWSQTVSSLYFLL 476

Query: 181 VISLSISGARAPRTLSHTPGMLLDTFSHSISREASS------------------------ 240
           VISL I GA  PRT +HT  ML D FS  I REASS                        
Sbjct: 477 VISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRWPMLQTSGEL 536

Query: 241 -SDVRNHWKCTCSEVNGLSSRSSCARGPSTVSSLCFVLIISLSIFGARTPRTSTHTPDML 300
            S VRN+WK TCSE N L SR+S      T++ +               PRT THTP ML
Sbjct: 537 SSGVRNNWKRTCSERNRLGSRTSNVCPKKTLARMPQTQF--------PRPRTLTHTPGML 577

[Close]
BLAST of IVF0023775 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 191 bits (486), Expect = 8.33e-51
Identity = 145/327 (44.34%), Postives = 163/327 (49.85%), Query Frame = 0 

Query: 68   PGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGMLPDTFSMGLMLRGLQPTVLACS 127
            PG K GP T+ SLCSVLVISL IF AR LRTSTH PGM+ DTF  G+   G + + L   
Sbjct: 1292 PGEKCGPPTISSLCSVLVISLPIFRARTLRTSTHTPGMVSDTFFGGI---GWEASWLEGE 1351

Query: 128  LTRFTRCSKRNGLSSRNFDALPKENASENASDSVFSSWVKSGTPTVSSLYSVVVISLSIS 187
            L         NGLSS+   A P +  +            KSG PTVSSL SV+VISLSI 
Sbjct: 1352 LCEV------NGLSSKISSARPMKTRARMPRTQFSRPGAKSGPPTVSSLCSVLVISLSIF 1411

Query: 188  GARAPRTLSHTPGMLLDTFSHS-------------------------------------- 247
            GAR  RT +HT GML DTFS                                        
Sbjct: 1412 GARTLRTSTHTSGMLPDTFSGETTGNALQRSKRPELKDFRCSSQENANEIAPDSIFSSLS 1471

Query: 248  -----------ISREASS-------------------------SDVRNHWKCTCSEVNGL 300
                       + REASS                         S VRNHWKCTCSE NGL
Sbjct: 1472 KKRSPDVFFSLLRREASSLEEELWCDLKRSKRWPMFPTNGERSSGVRNHWKCTCSEGNGL 1531

[Close]
BLAST of IVF0023775 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 146 bits (369), Expect = 1.18e-35
Identity = 114/277 (41.16%), Postives = 126/277 (45.49%), Query Frame = 0 

Query: 10  IGREKSSLV--GELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSSRSFG--- 69
           IG +  S +  G      K  +RWPMLPTSGER SGVR  WK TC EGNG+SSR+ G   
Sbjct: 232 IGHKSGSELVGGRTVVRSKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSSRTSGARP 291

Query: 70  -----------FSCPGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGMLPDTFSMG 129
                      FS PG K  P TV +LCSVLV SLSIFGA   RTSTH PGMLPDTFS  
Sbjct: 292 KKTRARMPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSER 351

Query: 130 LMLRGLQPTVLACSLTRFTRCSKRNGLSSRNFDALPKENASENASDSVFSSWVKSGTPTV 189
                       C    F    K                            W   G    
Sbjct: 352 -----------ECPRLSFLVLGKL---------------------------WSPDG---F 411

Query: 190 SSLYSVVVISLSISGARAPRTLSHTPGMLLDTFSHSISREASS----------------- 245
             L  +   S+ + G+  PRT +HT GML DTFS  I REASS                 
Sbjct: 412 FPLLRIGHKSVDLRGST-PRTSTHTSGMLPDTFSGGIGREASSLEGELLCDPKPSKRWPM 466

[Close]
BLAST of IVF0023775 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 121 bits (303), Expect = 8.18e-29
Identity = 70/126 (55.56%), Postives = 79/126 (62.70%), Query Frame = 0 

Query: 1   MLPNTFSRGIGREKSSLVGELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSS 60
           MLP+ F++GIGRE SSL GELW + KR KRWPML TSGER SGVR HWK TCS  N +SS
Sbjct: 46  MLPHMFTQGIGREASSLEGELWFDPKRFKRWPMLATSGERLSGVRNHWKCTCSGANRLSS 105

Query: 61  RSFG--------------FSCPGVKIGPSTVFSLCSVLVISLSIFGARALRTSTHAPGML 112
           R+ G              FS P  K  P  V SLCSVLVISLSIFGA   RTS     +L
Sbjct: 106 RTSGVCPMKTRPRMSRTQFSRPRAKSDPPMVSSLCSVLVISLSIFGACTPRTSRPTYPLL 165

[Close]
BLAST of IVF0023775 vs. NCBI nr
Match: KAA0026022.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (273), Expect = 1.30e-24
Identity = 56/87 (64.37%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 1  MLPNTFSRGIGREKSSLVGELWCNLKRSKRWPMLPTSGERWSGVRKHWKYTCSEGNGMSS 60
          MLP+ FS GIGRE +SL GELWC+ KRSKRWPMLPTSGER SG R HWK TCSEGNG+SS
Sbjct: 1  MLPDMFSGGIGREANSLEGELWCDPKRSKRWPMLPTSGERSSGFRNHWKCTCSEGNGLSS 60

Query: 61 RSFG--------------FSCPGVKIG 73
          R+ G              FS PGVK G
Sbjct: 61 RTSGARPKKTRAGMPRTQFSRPGVKSG 87

The following BLAST results are available for this feature:
BLAST of IVF0023775 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023775 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DIF81.6e-5246.46Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010... [more]
A0A5A7V5J22.4e-4544.24Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5D3DFP25.7e-3142.47Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V3688.9e-2455.56Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VGB19.2e-2170.00Mitochondrial intermembrane space import and assembly protein 40 OS=Cucumis melo... [more]
BLAST of IVF0023775 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK23424.11.11e-5946.46gag/pol protein [Cucumis melo var. makuwa][more]
KAA0062888.18.33e-5144.34non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
TYK22521.11.18e-3541.16uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
KAA0061317.18.18e-2955.56hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142... [more]
KAA0026022.11.30e-2464.37Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuw... [more]
BLAST of IVF0023775 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023775.1IVF0023775.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0005488 binding
molecular_function GO:0008234 cysteine-type peptidase activity