IVF0023667 (gene) Melon (IVF77) v1

Overview


Name	IVF0023667
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Collagen triple helix repeat protein
Location	chr05: 13306027 .. 13306182 (+)
RNA-Seq Expression	IVF0023667
Synteny	IVF0023667

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCCGGCGAAGAGGAAGAGGCAGACGAAAACTATGGATCCAACGAAGAGGAACAATAAGGCAAAAACTATGAATCCGACGAAGAGGAACACTCCAACAAAGAGGAACACTCCAGCAAAGAGGAAGAGTCCGGGTTGTAGAGGAAGACGATGA

mRNA sequence

ATGGATCCGGCGAAGAGGAAGAGGCAGACGAAAACTATGGATCCAACGAAGAGGAACAATAAGGCAAAAACTATGAATCCGACGAAGAGGAACACTCCAACAAAGAGGAACACTCCAGCAAAGAGGAAGAGTCCGGGTTGTAGAGGAAGACGATGA

Coding sequence (CDS)

ATGGATCCGGCGAAGAGGAAGAGGCAGACGAAAACTATGGATCCAACGAAGAGGAACAATAAGGCAAAAACTATGAATCCGACGAAGAGGAACACTCCAACAAAGAGGAACACTCCAGCAAAGAGGAAGAGTCCGGGTTGTAGAGGAAGACGATGA

Protein sequence

MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR

Homology

[Close]

BLAST of IVF0023667 vs. ExPASy TrEMBL
Match: A0A5D3DFL7 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G001450 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 5.2e-17
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 52
          MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0023667 vs. ExPASy TrEMBL
Match: A0A5A7UD84 (Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001290 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-16
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 52
          MDPAKRKRQTKTMDPTKRNNKAKTMNPTKR+TPTKRNTPAKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0023667 vs. ExPASy TrEMBL
Match: A0A5A7UXT0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold340G00860 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.6e-10
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPG--CRGRR 52
          MDP KRK QTKTMDPTKRNN+AKTM+PTKRN+ TKRN+P KR SPG  CRGRR
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCRGRR 53

[Close]

BLAST of IVF0023667 vs. NCBI nr
Match: TYK22248.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 5.20e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 51
          MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0023667 vs. NCBI nr
Match: KAA0051389.1 (Collagen triple helix repeat protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 3.02e-24
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPGCRGRR 51
          MDPAKRKRQTKTMDPTKRNNKAKTMNPTKR+TPTKRNTPAKRKSPGCRGRR
Sbjct: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRSTPTKRNTPAKRKSPGCRGRR 51

[Close]

BLAST of IVF0023667 vs. NCBI nr
Match: KAA0060038.1 (hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 5.56e-16
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MDPAKRKRQTKTMDPTKRNNKAKTMNPTKRNTPTKRNTPAKRKSPG--CRGRR 51
          MDP KRK QTKTMDPTKRNN+AKTM+PTKRN+ TKRN+P KR SPG  CRGRR
Sbjct: 1  MDPVKRKSQTKTMDPTKRNNQAKTMDPTKRNSLTKRNSPTKRNSPGPDCRGRR 53

The following BLAST results are available for this feature:

BLAST of IVF0023667 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023667 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFL7	5.2e-17	100.00	Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7UD84	2.0e-16	98.04	Collagen triple helix repeat protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7UXT0	3.6e-10	79.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0023667 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22248.1	5.20e-25	100.00	Collagen triple helix repeat protein [Cucumis melo var. makuwa]	[more]
KAA0051389.1	3.02e-24	98.04	Collagen triple helix repeat protein [Cucumis melo var. makuwa]	[more]
KAA0060038.1	5.56e-16	79.25	hypothetical protein E6C27_scaffold340G00860 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023667 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023667.1	IVF0023667.1	mRNA