IVF0023631 (gene) Melon (IVF77) v1

Overview


Name	IVF0023631
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 6041572 .. 6041922 (+)
RNA-Seq Expression	IVF0023631
Synteny	IVF0023631

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTCAGAGGCGAATGGTCGGAGATGGGCGACCGACGACGACGGTGCAAGAGGCGACGGCGAAATGCGATGGCAGTTGCTCAGATGTGACCGGCTGACGGGCAAAGGCAAAACCCAAACCAAAAAACGGACCACCTGCGTGTAAAAAGTCGAGCGAAGGAGGACGATTGCTCGGAGGTTGAAGATTTTGGAGAAGACGTGACGTCCGGTGAGCTCTGAATGACCGGAGGTTGCGGCGGACGAGAGAGAGGTTCGACGGCGGCGACGACAGCAACACAAACTAGGTTTTTGTTTAATTTTTAAAAAATTTAGGGGGCGTTTGGGGAAGGGTTGGATTATGGGGGGTTAG

mRNA sequence

ATGCGGTCAGAGGCGAATGGTCGGAGATGGGCGACCGACGACGACGGTGCAAGAGGCGACGGCGAAATGCGATGGCAGTTGCTCAGATGTGACCGGCTGACGGGCAAAGGCAAAACCCAAACCAAAAAACGGACCACCTGCGTTGCGGCGGACGAGAGAGAGGTTCGACGGCGGCGACGACAGCAACACAAACTAGGTTTTTGTTTAATTTTTAAAAAATTTAGGGGGCGTTTGGGGAAGGGTTGGATTATGGGGGGTTAG

Coding sequence (CDS)

ATGCGGTCAGAGGCGAATGGTCGGAGATGGGCGACCGACGACGACGGTGCAAGAGGCGACGGCGAAATGCGATGGCAGTTGCTCAGATGTGACCGGCTGACGGGCAAAGGCAAAACCCAAACCAAAAAACGGACCACCTGCGTTGCGGCGGACGAGAGAGAGGTTCGACGGCGGCGACGACAGCAACACAAACTAGGTTTTTGTTTAATTTTTAAAAAATTTAGGGGGCGTTTGGGGAAGGGTTGGATTATGGGGGGTTAG

Protein sequence

MRSEANGRRWATDDDGARGDGEMRWQLLRCDRLTGKGKTQTKKRTTCVAADEREVRRRRRQQHKLGFCLIFKKFRGRLGKGWIMGG

Homology

[Close]

BLAST of IVF0023631 vs. ExPASy TrEMBL
Match: A0A0A0LG13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.6e-08
Identity = 48/91 (52.75%), Postives = 48/91 (52.75%), Query Frame = 0


Query: 1  MRSEANGRRWATDDDGARGDGEMRWQLLRCDRLTGKGKTQTKKRTTC------------- 60
          MRS ANGRRWA DDD      EMR QLL  DR TGKGKT T KRTTC             
Sbjct: 1  MRSAANGRRWAIDDD------EMRRQLLIYDRPTGKGKTHTIKRTTCGQKVERRRTIAHR 60

Query: 61 -----------VAADEREVRRRRRQQHKLGF 68
                     V ADEREV    RQQHKLGF
Sbjct: 61 LKIPVSSELLEVVADEREV----RQQHKLGF 81

[Close]

BLAST of IVF0023631 vs. NCBI nr
Match: KAE8651316.1 (hypothetical protein Csa_001202 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 3.74e-10
Identity = 39/65 (60.00%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 1  MRSEANGRRWATDDDGARGDGEMRWQLLRCDRLTGKGKTQTKKRTTCVAADEREVRRRRR 60
          MRS ANGRRWA DDD      EMR QLL  DR TGKGKT T KRTTC     ++V RRR 
Sbjct: 1  MRSAANGRRWAIDDD------EMRRQLLIYDRPTGKGKTHTIKRTTCG----QKVERRRT 55

Query: 61 QQHKL 65
            H+L
Sbjct: 61 IAHRL 55

The following BLAST results are available for this feature:

BLAST of IVF0023631 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023631 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG13	2.6e-08	52.75	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854200 PE=4 SV=1	[more]

BLAST of IVF0023631 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651316.1	3.74e-10	60.00	hypothetical protein Csa_001202 [Cucumis sativus]	[more]

BLAST of IVF0023631 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023631.1	IVF0023631.1	mRNA