IVF0023477 (gene) Melon (IVF77) v1

Overview
NameIVF0023477
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionGag/pol protein
Locationchr08: 24557150 .. 24557428 (-)
RNA-Seq ExpressionIVF0023477
SyntenyIVF0023477
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCAAAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG

mRNA sequence

ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCAAAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG

Coding sequence (CDS)

ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCAAAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG

Protein sequence

MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH
Homology
[Close]
BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 1    MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
            MPR+QFSR G +S  PTVSSL FVLVI+LSIF ARTPRTST T GML DM S+GIG++AS
Sbjct: 1538 MPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEAS 1597

Query: 61   SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 93
            SLEGEL C+ KRSK W MLP S  RSSG+RNH
Sbjct: 1598 SLEGELWCNPKRSKRWTMLPTSVERSSGIRNH 1629

[Close]
BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0 

Query: 11  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDL 70
           V+S PPTVSS+  VLVI LSIFGA  PRTST T GML DM S GI R+A SLEGEL CD 
Sbjct: 129 VKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCDP 188

Query: 71  KRSKTWPMLPASGGRSSGVRNH 93
           KRS+ WPMLP SG RSS VRNH
Sbjct: 189 KRSERWPMLPTSGKRSSDVRNH 210

[Close]
BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 70/146 (47.95%), Postives = 74/146 (50.68%), Query Frame = 0 

Query: 1   MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF--------- 60
           MP+TQFSRPG +S PPTVS+L  VLV SLSIFGA TPRTST       DTF         
Sbjct: 298 MPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLS 357

Query: 61  --------------------------------------GMLSDMVSQGIGRKASSLEGEL 93
                                                 GML D  S GIGR+ASSLEGEL
Sbjct: 358 FLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGEL 417

[Close]
BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 17  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTW 76
           TVSSL F+LVISL IFGA TPRTST T  ML DM SQGIGR+ASSLEGELRCD K  K W
Sbjct: 432 TVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRW 491

Query: 77  PMLPASGGRSSGVRNH 93
           PML  SG  SSGVRN+
Sbjct: 492 PMLQTSGELSSGVRNN 507

[Close]
BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 60/92 (65.22%), Postives = 63/92 (68.48%), Query Frame = 0 

Query: 1  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
          MPRTQFSR   +  P        VLVISLSIF ART RTST T GML  M +QGIGR+AS
Sbjct: 1  MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 61 SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 93
          SLEGEL  D KR K WPML  SG R SGVRNH
Sbjct: 61 SLEGELWFDPKRFKRWPMLATSGERLSGVRNH 92

[Close]
BLAST of IVF0023477 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 3.76e-33
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0 

Query: 1    MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
            MPR+QFSR G +S  PTVSSL FVLVI+LSIF ARTPRTST T GML DM S+GIG++AS
Sbjct: 1538 MPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEAS 1597

Query: 61   SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 92
            SLEGEL C+ KRSK W MLP S  RSSG+RNH
Sbjct: 1598 SLEGELWCNPKRSKRWTMLPTSVERSSGIRNH 1629

[Close]
BLAST of IVF0023477 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 2.22e-29
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0 

Query: 11  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDL 70
           V+S PPTVSS+  VLVI LSIFGA  PRTST T GML DM S GI R+A SLEGEL CD 
Sbjct: 129 VKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCDP 188

Query: 71  KRSKTWPMLPASGGRSSGVRNH 92
           KRS+ WPMLP SG RSS VRNH
Sbjct: 189 KRSERWPMLPTSGKRSSDVRNH 210

[Close]
BLAST of IVF0023477 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.81e-26
Identity = 60/92 (65.22%), Postives = 63/92 (68.48%), Query Frame = 0 

Query: 1  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
          MPRTQFSR   +  P        VLVISLSIF ART RTST T GML  M +QGIGR+AS
Sbjct: 1  MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 61 SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 92
          SLEGEL  D KR K WPML  SG R SGVRNH
Sbjct: 61 SLEGELWFDPKRFKRWPMLATSGERLSGVRNH 92

[Close]
BLAST of IVF0023477 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 2.32e-25
Identity = 70/146 (47.95%), Postives = 74/146 (50.68%), Query Frame = 0 

Query: 1   MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF--------- 60
           MP+TQFSRPG +S PPTVS+L  VLV SLSIFGA TPRTST       DTF         
Sbjct: 298 MPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLS 357

Query: 61  --------------------------------------GMLSDMVSQGIGRKASSLEGEL 92
                                                 GML D  S GIGR+ASSLEGEL
Sbjct: 358 FLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGEL 417

[Close]
BLAST of IVF0023477 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 4.59e-25
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0 

Query: 17  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTW 76
           TVSSL F+LVISL IFGA TPRTST T  ML DM SQGIGR+ASSLEGELRCD K  K W
Sbjct: 432 TVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRW 491

Query: 77  PMLPASGGRSSGVRNH 92
           PML  SG  SSGVRN+
Sbjct: 492 PMLQTSGELSSGVRNN 507

The following BLAST results are available for this feature:
BLAST of IVF0023477 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023477 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V5J27.6e-2772.83Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak... [more]
A0A5D3CZ271.6e-2171.95ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5D3DFP24.1e-2047.95Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DIF86.9e-2075.00Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010... [more]
A0A5A7V3681.2e-1965.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of IVF0023477 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062888.13.76e-3372.83non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw... [more]
TYK15439.12.22e-2971.95uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa][more]
KAA0061317.11.81e-2665.22hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142... [more]
TYK22521.12.32e-2547.95uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa][more]
TYK23424.14.59e-2575.00gag/pol protein [Cucumis melo var. makuwa][more]
BLAST of IVF0023477 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023477.1IVF0023477.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
cellular_component GO:0110165 cellular anatomical entity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity