IVF0023477 (gene) Melon (IVF77) v1

Overview


Name	IVF0023477
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr08: 24557150 .. 24557428 (-)
RNA-Seq Expression	IVF0023477
Synteny	IVF0023477

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCAAAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG

mRNA sequence

ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCAAAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG

Coding sequence (CDS)

ATGCCCCGGACTCAGTTTTCTCGTCCTGGGGTAAGAAGCAGTCCTCCGACGGTTTCTTCCCTTTCCTTCGTATTGGTCATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACCTCAACCGACACTTTTGGCATGCTCTCTGACATGGTTTCCCAAGGTATAGGTCGGAAAGCGAGCTCATTGGAGGGAGAACTAAGGTGCGACCTAAAACGGTCCAAAACGTGGCCAATGCTTCCAGCGAGCGGCGGACGCTCGTCTGGTGTCAGAAACCACTAG

Protein sequence

MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTWPMLPASGGRSSGVRNH

Homology

[Close]

BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1    MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
            MPR+QFSR G +S  PTVSSL FVLVI+LSIF ARTPRTST T GML DM S+GIG++AS
Sbjct: 1538 MPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEAS 1597

Query: 61   SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 93
            SLEGEL C+ KRSK W MLP S  RSSG+RNH
Sbjct: 1598 SLEGELWCNPKRSKRWTMLPTSVERSSGIRNH 1629

[Close]

BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5D3CZ27 (ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00010 PE=3 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.6e-21
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 11  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDL 70
           V+S PPTVSS+  VLVI LSIFGA  PRTST T GML DM S GI R+A SLEGEL CD 
Sbjct: 129 VKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCDP 188

Query: 71  KRSKTWPMLPASGGRSSGVRNH 93
           KRS+ WPMLP SG RSS VRNH
Sbjct: 189 KRSERWPMLPTSGKRSSDVRNH 210

[Close]

BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 4.1e-20
Identity = 70/146 (47.95%), Postives = 74/146 (50.68%), Query Frame = 0


Query: 1   MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF--------- 60
           MP+TQFSRPG +S PPTVS+L  VLV SLSIFGA TPRTST       DTF         
Sbjct: 298 MPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLS 357

Query: 61  --------------------------------------GMLSDMVSQGIGRKASSLEGEL 93
                                                 GML D  S GIGR+ASSLEGEL
Sbjct: 358 FLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGEL 417

[Close]

BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5D3DIF8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00100 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 6.9e-20
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 17  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTW 76
           TVSSL F+LVISL IFGA TPRTST T  ML DM SQGIGR+ASSLEGELRCD K  K W
Sbjct: 432 TVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRW 491

Query: 77  PMLPASGGRSSGVRNH 93
           PML  SG  SSGVRN+
Sbjct: 492 PMLQTSGELSSGVRNN 507

[Close]

BLAST of IVF0023477 vs. ExPASy TrEMBL
Match: A0A5A7V368 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1799G00060 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.2e-19
Identity = 60/92 (65.22%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
          MPRTQFSR   +  P        VLVISLSIF ART RTST T GML  M +QGIGR+AS
Sbjct: 1  MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 61 SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 93
          SLEGEL  D KR K WPML  SG R SGVRNH
Sbjct: 61 SLEGELWFDPKRFKRWPMLATSGERLSGVRNH 92

[Close]

BLAST of IVF0023477 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 131 bits (330), Expect = 3.76e-33
Identity = 67/92 (72.83%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 1    MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
            MPR+QFSR G +S  PTVSSL FVLVI+LSIF ARTPRTST T GML DM S+GIG++AS
Sbjct: 1538 MPRSQFSRSGAKSDTPTVSSLCFVLVINLSIFEARTPRTSTHTTGMLPDMFSRGIGQEAS 1597

Query: 61   SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 92
            SLEGEL C+ KRSK W MLP S  RSSG+RNH
Sbjct: 1598 SLEGELWCNPKRSKRWTMLPTSVERSSGIRNH 1629

[Close]

BLAST of IVF0023477 vs. NCBI nr
Match: TYK15439.1 (uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 114 bits (285), Expect = 2.22e-29
Identity = 59/82 (71.95%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 11  VRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDL 70
           V+S PPTVSS+  VLVI LSIFGA  PRTST T GML DM S GI R+A SLEGEL CD 
Sbjct: 129 VKSGPPTVSSICSVLVIGLSIFGASVPRTSTHTPGMLPDMFSGGIDREARSLEGELWCDP 188

Query: 71  KRSKTWPMLPASGGRSSGVRNH 92
           KRS+ WPMLP SG RSS VRNH
Sbjct: 189 KRSERWPMLPTSGKRSSDVRNH 210

[Close]

BLAST of IVF0023477 vs. NCBI nr
Match: KAA0061317.1 (hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK14265.1 hypothetical protein E5676_scaffold1799G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 1.81e-26
Identity = 60/92 (65.22%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 1  MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKAS 60
          MPRTQFSR   +  P        VLVISLSIF ART RTST T GML  M +QGIGR+AS
Sbjct: 1  MPRTQFSRRRAKMVPQRFLPFGTVLVISLSIFEARTLRTSTHTSGMLPHMFTQGIGREAS 60

Query: 61 SLEGELRCDLKRSKTWPMLPASGGRSSGVRNH 92
          SLEGEL  D KR K WPML  SG R SGVRNH
Sbjct: 61 SLEGELWFDPKRFKRWPMLATSGERLSGVRNH 92

[Close]

BLAST of IVF0023477 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 109 bits (272), Expect = 2.32e-25
Identity = 70/146 (47.95%), Postives = 74/146 (50.68%), Query Frame = 0


Query: 1   MPRTQFSRPGVRSSPPTVSSLSFVLVISLSIFGARTPRTST-------DTF--------- 60
           MP+TQFSRPG +S PPTVS+L  VLV SLSIFGA TPRTST       DTF         
Sbjct: 298 MPQTQFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTSTHTPGMLPDTFSERECPRLS 357

Query: 61  --------------------------------------GMLSDMVSQGIGRKASSLEGEL 92
                                                 GML D  S GIGR+ASSLEGEL
Sbjct: 358 FLVLGKLWSPDGFFPLLRIGHKSVDLRGSTPRTSTHTSGMLPDTFSGGIGREASSLEGEL 417

[Close]

BLAST of IVF0023477 vs. NCBI nr
Match: TYK23424.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (270), Expect = 4.59e-25
Identity = 57/76 (75.00%), Postives = 60/76 (78.95%), Query Frame = 0


Query: 17  TVSSLSFVLVISLSIFGARTPRTSTDTFGMLSDMVSQGIGRKASSLEGELRCDLKRSKTW 76
           TVSSL F+LVISL IFGA TPRTST T  ML DM SQGIGR+ASSLEGELRCD K  K W
Sbjct: 432 TVSSLYFLLVISLLIFGAHTPRTSTHTLDMLPDMFSQGIGREASSLEGELRCDPKWYKRW 491

Query: 77  PMLPASGGRSSGVRNH 92
           PML  SG  SSGVRN+
Sbjct: 492 PMLQTSGELSSGVRNN 507

The following BLAST results are available for this feature:

BLAST of IVF0023477 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023477 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	7.6e-27	72.83	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3CZ27	1.6e-21	71.95	ULP_PROTEASE domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A5D3DFP2	4.1e-20	47.95	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DIF8	6.9e-20	75.00	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G0010...	[more]
A0A5A7V368	1.2e-19	65.22	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0023477 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	3.76e-33	72.83	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYK15439.1	2.22e-29	71.95	uncharacterized protein E5676_scaffold477G00010 [Cucumis melo var. makuwa]	[more]
KAA0061317.1	1.81e-26	65.22	hypothetical protein E6C27_scaffold6213G00130 [Cucumis melo var. makuwa] >TYK142...	[more]
TYK22521.1	2.32e-25	47.95	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
TYK23424.1	4.59e-25	75.00	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023477 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023477.1	IVF0023477.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity