IVF0023458 (gene) Melon (IVF77) v1

Overview


Name	IVF0023458
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr02: 18146345 .. 18153048 (+)
RNA-Seq Expression	IVF0023458
Synteny	IVF0023458

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTCAGCAAAGGAAACAGGCTAAGCTCAAGGACTTCTAGCGTTCGTCCAGGAAAGTGCGAGAGAGAATGCACTGGACTCAGTTTTTCTATTACGAGGTAAAAAACGGCCCTGCGGTAACTTCTTTGTTTTGTGTCGTGTTGGGCATAAGCATTTCGCGCTTCAGGACTCGTCCTCCGAGGACTTTAGTTACATTTCTGGCACCGTCCCTCACTCATTTTCCAAAGTATAGATTGGGAAGCGAGCTCGTTGGTGGGAGAACTAAGGTGGAACCTTGAACGATCAACAAGAAGGCCAATGCTCTTCGAACGATTGGCAAACGGTCCTCCGGTGTCAGAAACCATTTTAAACCGGCTGAGCTTGAGAACCTCCGGTGTTCGTCCCAAGAAAATGCAAGCGAGAATGCCTCAAACTCAGTTTTCTCTTTCTGGAGTAAAAAGCGTCCCCCCCCCCCGACGGTTTCTTCCTTTTGCTTTCGATCTTCAGGGATCGTACTCCGAGGACTTCAACCCACACTCATGTTATACTCTCTGACATGTTTTCCCAAGGTATAGGTCAAGAAGCGAGCTCGTTGGAGGGAGAACTAAGGTGCGATGCAAACAGTAAAAAAAATGGCCAATGCTTCTAACGATTGGCGAACGCTCGTTCGATAGAAACCACTGAAAATGCCTTACAGCAAAGGAAACAAGCTGGGCTCAAGGACTTTTGGTGTTTGTCCCAAGAAAACGCGAGCGATAATGCCCCAGACTCAGTTTTCTCGTCCTGGGGTAAAAAGCGGTCCCCCCATGGTTTCTTCCCTTTGCTCCGTATTAGTCTAAGTCTTTCGATCTTCGAGGCTCGTACTCCAAGGACTTTAACCAACACTCCTAACATGCTCCCTGACACGTTTTCCAAAGGTATAGGTCGGTAAGTGACCTCGTTGGAGGGAGAACTAAGGTGCGAACCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGACTGGCGAACGCTTGTCCCATGTTAGAAACCATTGGAAATGGACTCATAGCAAAGGAAACGGACTGAGCTCGAGCACTTCTAATATTTGTCCCAAGAAAATATGGGCGAGAATGCCCCAGACTCTGTTTTCTCGTCTGGGGTCAAAAACGGTCCCCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTCGACGTTCGTACTCCAAGGACTTCAATCCACACTCCTAGCATGCTCCCGACACGTTTTTTGAAGGTATAGGTCGGGAAGCGAGCTCGTTCAAGGGAGAACTAAGGTGCGACCCAAAATGGTCCAAAAGATAGCAATGCTTCCAACAAGTGGCGAACGCTCGTACGGTGTTAGAAACCATTGGAAAATACATTTGCAACAAAGGAAACGGTCTGAGCTCGAGGACCTCTAGTGTTCGCCCCAAGAAAATGCGAGCCAGAATGCCCCTACTCAGTTTTCTCGTCCTAAGGTAAAAAGCGGTCCCCCGACTGTTCTTTCCTTTGCTTCGTATTGGTCATAAGTCTTTCGATCTTGGGTTCGTACTCCGAGGACTTTAACCCACATCCTTGTATGCTCCCTAAACGTTTTCCCAAGGTACAGGTCGGAGCGAGCTCGTGGTATGGAGAACTAAGGGGCGACCCAAAACGGTCCAAAAGATGGCCAATGCTTCCAACGAGTGGAGAACGCTCGTCCTATGTTAGAAACCATCGGAAATACACTTGTAGTGAAGGAAATAGGCTGAGCTAGAGGATTCTGGTGTTTGTCCCATGAAAACGCGAACGACAATGGCCAGGATTCAGTTTTTCTCGTCTTCGGGTAAAAAGCGGTCCCACGATGGTTTCATCTCTTTGCTTCGTATTGGCCTAAGTCTTTCGATCTTCGAGGCTCATACTCCAAGGACTTCAACCCACACTCCTGGCATGCTTCCTGATACATTTTCCTAAATTATAGATCGGGAAGCGAGCTCGTTGGAGGGAGAACTCAGGTGCGATCCAAAATGATCCAAAAGATAGCTAATGCTTCCAACGACTGGCGAACGCTCGTCCCATGTCAGAAACCACTGGAAATGTACTTGCAATGAAGGAAACGGGCTGAGCTCATGGACTTCCGGTGTTTGTCCCAAGAAAACAAAGAGCGAGAATGCCTCGAACTCAGTTTTCTCATCCTGGGGTAAAAAATGGTTTTCCGACGGTTTCTTCCCTTTGCTTCGTATTGGTCATAAGTCTTTTGATCTTCGGGGCTCGTACTCTGAGGACGTCAACCAACACTCTAGCATGCTCCAGGACATGTTTTCCTAAGGTATAGGTCGGGAAGGGAGCTCGTTGGAGGGAGAACTAAGGTGCGACCCAAAACGGTCAAAAGATGGCCAATGCTTCCAACGAGTGGCAAACGTTCGTCTAGTGTCAGACACCACAGAAAATGCGCTTGCAGCGAAGGAAAGAGGCTGAGCTCGAGGACATCTACTGTCCATCCCAAGAAAATGCGAGCGAGAATGCCCTAGACTCAGTTTTCTCGTCCTTGGGTAAAAAGCTGTCCCCTGACAGTTTCTTCCCTTTGCTTCGTCTTGGTCATAAGTCTTTCGATCTTTGGGGCTCGTACTTCGAGGATTTCAACCCACACTCCTAGCATGCTCCCTGACGTTTTTCCCAAGGTATAGGTCGGGAAGCCAGCTCGTTGGAGGGAGAACTAATGTGCGACCCAAACGGTCCAAAGCATGGCCAATGCTTCCAACGAGTGGCGAACGCTCGTCCAGTGTTGAAACCACTAGAAATGCACTTGTAGCAAAGGAAATGGGCTAAGCTCGAGGACATCCAGTGTTTGTTTGAAGAAAAAGTGAGCGAGAATGCCCCGGACTCAGTTTCCTCGTCCTGGTGTACAAAGCAGTTTCCCGACCGTTTCTTCCCTTTGCTTCATATTGGTCATTCGTACTCAAAGGACTTCAACCCATACTCTTGGCATGCTCTCTAACACGTTTTCCGAAGGTATAGGTAGGGAAGCAAGCTCATTGGAGGGAGAACTAAGGTATGACCCAAAACTGTGTAAAAGATGGGTAATGCTTCCAACGAGTGGCGATCGCTCGTCCGGTGTCAGAAACCACTGGAAATGCACTTGTAGTGAAGAAAACAAGCAGATCTTGAGGATTTCCGATGTTTGTCCAAAGAAAACACGAGCGAGAATGCCCCGGACTCAATTCCTCGTCTTGGGGTAAAAAGTGGTTGCCCGACGGTTTCTTCCCTTTGCTCGTATTGGTCATATGTCTATCGATCTTCGAGTCTCGTACTCCGAGGACTTCAACCCACACTCCTGGCATGCTCCCTGACACGTTTATCCGAAGTATAGGTTGGAAAGCGAGCTTGTTGGAGGGAGAACTAAGGTGCGACCCAAAACAGTCCAAAAGATGGCCAATGCTTCCAACGAGTGCCAAATGAAGGGAAAAGACTAAAGAGCATGTTGCAGCGGAATAAAGAAAATCATGCTTTACTCTATATGCATCTAAACGATTTAGAAGTTGACATGCATGTGTTATGCGATAGACCTAAACGAAGAGCATAAAAGGTAAACGATGAACTTACCTTTATAGTTCTGAACATAGATCCAAAGCTTCTTCTTTGCCTGAAAATCACGAGCAAGGACAAACACTAAGCTGGCTACTAATCTCAGGACCAAGAACGGAGTTGTGGAACTCGATTTTGTGAAGTAAAACTTAGAGAGAAAAGAAGGAGGTGGGCGTATCGTTTAGGTGATATTTTTATAAGAAAACAACATCCTTTTCTCATTCTGCAATGAGAAGATTATATATGAAATTTACATGTAAATTGCATGCAAATATTTCACATAATCTCAACACCTAATTAATCCATTTACTCTTAATGGAATTAGTGGCTTCTAAATCACAATAGGCTGCCACATTGTCCATAACTTTTAATTAATTAAGAAATTAGTCAAAAGGGCAATTTGGTCATTTGACCAATTAAGTCAAAGTCAATCTTGACTTTTCTTAGTCAAAATCAACTTTTTTACTTTTGCTATTTACCCGTCTTGACTAATTCTAACCTCCGAAGTATGAATCTGCATTCACTTTTCTAAAATTCAAATCATATTTGAATATAATTCGGTCAAAGTTCAAAGTTAAAAGTCAACATGTTGATTTTACAATTTTAACGGTTTTTTCCTTTTAATGAATCCATAATCTCTTTAGCCGTGGCTAAGGATCATGTTTCTTTGCTAAAACATCTGACATGCTAGCAAGGATGTAGAAACGGGCTTTCTCATTTGCTTTTATCCATCAATCATATGCTTTCCGACTAGCTCAATTTGCATTTGAGGCAGGGGTTTGAGGACATTCCTCAGTTAAGACAAATCTTAAATCATCAACCACTAGTATTGTGTTAAGATTTGATTTCCATGCCTATAGTTATCGCCGTTAAGTTTTTCGGAAGCTAACAATTGAACTATCGAGCTATTCATGCTGAAAAACATACTTTATTTAGAAACTATATATAAATAAACCAATCTTTTTAGAAAAACTTTGAATAATATACCCTTTTATTATGTTTTGCAACGATAGTTTAAAGGTTCAGAATAACCTCTACCGAGGGGTAGCCGATTACTCGTCCTTTGAATCAAGACAATCTTAACCAAATGCTAACTCACAAATATCTCATATTTACTTAGCATTTAGTTACCGTTTACTTTGGTCAAGAATATACTAACTATTTTAGTAATTCTGTAAGTGTAACCCTCCATTTTCGGTCCTCAAAGATAAGAATCATTATGCTCCCGAAAGTGGAAAGACAATATGAAAACTTATCTAAGAGACCCTATCTAAAATATGGAGTTCGCGGTGTTTCGAATCTTATTATACAGCCCTCCGAAGGTAGGGTGGCGCTCTAGGGCAGACAAGCAGGCACATTATAGGAATCTCACGGTGCGACCCAATGGGAGACCATGGGATGGGATGTATTGTCATATATCCCTCACCCACTTACTATGAACTACTTCCCCCATTCACCTTGTTCATAGCTCATGCAAACACTCTCCGAATGGAGTCCGCTCCTATACACGGCCCAAAGTCATACATAAACCTCACGGTGTGAACTCTTGGGGATGCTAAAGCTAAAAGTACGATACATTCTCCAGCTGAAGTGTTCTATAATTTTTGGGTAAATTATTCAAGATTTAATTTAGGCTAACTTAAACAAATCCTAAATTAGGTAAAAACATCCAAGCATAACATTATATTGGATTTAACCTACGATGTCTAAGCGATAAACCAATTTTATTACCTTACATCTCTCATGCATGCTCCTAAAAATAGGTTAACTAGGCTCAAGAACCGATTACGATCTCCAGGTAGGAGGTATTCCGTAAACTGTCAACTTAAAAACCTCCACTCCTTAGTCATCTTATCTGACTTGTTGACAAGATCGAATCAAGTGAGCCTCTGTAACCTAGTTTTACAAGATATCGACCTAAATCGTATTTTAGAAGATATGGTATTAACCTAAGTGATATTTTTATGAGAAAACAACATCCTTTTCTCATTCTGCAATGAGAAGATTATATATGAAATTCACATGCAAATTGCATGCAAATTATTTCATATAATCTCAAACACCTAATTGATCTATTAACTCAATGAAATTAGTGGCTTCTAATTCACAATAGGCTGCCACATTGCCCATTAACTTTTAATTAATTAAGAAATTAGTCAAAGGGGCAATTTGGTCATTTGACCAATTAAGTCAAAGTCAAACTTTGACTTTCTTAGTCAAAAATCAACTTTTTGACTTTTTGCTACTTTACCCATCTTGACTAATTCTAACCTCTCGAGTATGAATCAACATTCATTCTAAATTCAAATCATATTTGAATATAAATCCGGTCAAAGTTCAAAGTTAAAAGTCAACATGTTGACTTTTACAACTTTCACCGTTTCAAAACATTCCAAGCTTTTAAATATGAATCTATATTCATATTTATTTAAATCATATTTAAACACAAAGCTTAAAGTTTATTTCTACGACTTATATCTTATATATTTGTCAGTTTGTCTCTCTTTTCTTAGTTCGAACAATGCCACTAGTCAAGCTTTGAAAGTCTATACTTTACCAGCTTGGTCTCGTTTTCTCTTGTAGATCCATTTACAACCAATAGATTTTATATATTTGGTTGATCTACTAGAGTCCAGACAGAATGGAATACATAGATTCCGCTTCGAGGTCCATGGCTTTGATCCATTGGTCACAATCCAAATCATTCATTGCCTGTTTACAGGTCAATGGATCCTCTATCCCATCATTAGGTATAATGATTTGAGCTTTACTTAAACCCAAATAGCGATCAGGCAGTGGTACAACCCTCCCACTACGTCAAGGTTCTCTCAACTCTTGAGAAGGATGTGTTTGACCAATATTCCAACGAGTGATGAACGCTTGTCTGGTTTCAAAAACCACCAAAAATGCACTTGTAGTGAAGGAAACGTGCTGAGCTCAAGGACTTCTAGTGTTCATCAAAAGAAAATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCTTGGGGTAAAAAGTGGTGCCCCGACGGTGTCTTTCCTTTGCTTCGTATTCGTGATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACTTCACCCACACTCCGGGTATGCTCCCTGACACATTTTCCCAAGGTATAG

mRNA sequence

ATGCATTTCAGCAAAGGAAACAGGCTAAGCTCAAGGACTTCTAGCGTTCGTCCAGGAAAGTGCGAGAGAGAATGCACTGGACTCAGTTTTTCTATTACGAGTATAGATTGGGAAGCGAGCTCGTTGGTGGGAGAACTAAGGTGGAACCTTGAACGATCAACAAGAAGGCCAATGCTCTTCGAACGATTGGCAAACGGTCCTCCGGTGTCAGAAACCATTTTAAACCGGCTGAGCTTGAGAACCTCCGGTGTTCGTCCCAAGAAAATGCAAGCGAGAATGCCTCAAACTCAGTTTTCTCTTTCTGGAGTAAAAAGCGTCCCCCCCCCCCGACGCTCAAGGACTTCTAGTGTTCATCAAAAGAAAATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCTTGGGGTAAAAAGTGGTGCCCCGACGGTGTCTTTCCTTTGCTTCGTATTCGTGATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACTTCACCCACACTCCGGGTATGCTCCCTGACACATTTTCCCAAGGTATAG

Coding sequence (CDS)

ATGCATTTCAGCAAAGGAAACAGGCTAAGCTCAAGGACTTCTAGCGTTCGTCCAGGAAAGTGCGAGAGAGAATGCACTGGACTCAGTTTTTCTATTACGAGTATAGATTGGGAAGCGAGCTCGTTGGTGGGAGAACTAAGGTGGAACCTTGAACGATCAACAAGAAGGCCAATGCTCTTCGAACGATTGGCAAACGGTCCTCCGGTGTCAGAAACCATTTTAAACCGGCTGAGCTTGAGAACCTCCGGTGTTCGTCCCAAGAAAATGCAAGCGAGAATGCCTCAAACTCAGTTTTCTCTTTCTGGAGTAAAAAGCGTCCCCCCCCCCCGACGCTCAAGGACTTCTAGTGTTCATCAAAAGAAAATGCGAGCGAGAATGCCCCGGACTCAATTTTCTCGTCTTGGGGTAAAAAGTGGTGCCCCGACGGTGTCTTTCCTTTGCTTCGTATTCGTGATAAGTCTTTCGATCTTCGGGGCTCGTACTCCGAGGACTTCACCCACACTCCGGGTATGCTCCCTGACACATTTTCCCAAGGTATAG

Protein sequence

MHFSKGNRLSSRTSSVRPGKCERECTGLSFSITSIDWEASSLVGELRWNLERSTRRPMLFERLANGPPVSETILNRLSLRTSGVRPKKMQARMPQTQFSLSGVKSVPPPRRSRTSSVHQKKMRARMPRTQFSRLGVKSGAPTVSFLCFVFVISLSIFGARTPRTSPTLRVCSLTHFPKV

Homology

[Close]

BLAST of IVF0023458 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.0e-11
Identity = 43/54 (79.63%), Postives = 44/54 (81.48%), Query Frame = 0


Query: 112  SRTSSVHQKKMRARMPRTQFSRLGVKSGAPTVSFLCFVFVISLSIFGARTPRTS 166
            SRTSS   KK RARMPRTQFS+ G KSG PTVS LC V VISLSIFGARTPRTS
Sbjct: 1112 SRTSSARPKKTRARMPRTQFSQPGAKSGLPTVSSLCSVLVISLSIFGARTPRTS 1165

[Close]

BLAST of IVF0023458 vs. ExPASy TrEMBL
Match: A0A5D3BG85 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1625G00140 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 5.1e-11
Identity = 80/248 (32.26%), Postives = 96/248 (38.71%), Query Frame = 0


Query: 2   HFSKGNRLSSRTSSVRPGKCERE---------------------CTGLSFSITS------ 61
           HFS+GN LSSRTS VR  K                         C     S +S      
Sbjct: 336 HFSEGNGLSSRTSGVRSRKVRARMPRTLFFHHRVKSVPTTVSLFCVVFVISASSFVTCAP 395

Query: 62  -----------------IDWEASSLVGEL-RWNLERSTRRPMLFERLANGPPVSETI--- 121
                            I WE SSL GEL  W+ +    +  ++       P S+ I   
Sbjct: 396 RTSVYVPGIVPHPFSQGIGWEVSSLEGELSAWSFKTCAPKTSIYVPGIVPHPFSQGIGRE 455

Query: 122 ----------LNRLSLRTSGVRPKKMQARMPQTQFSLSGVKSVPP--------------P 165
                      N LS R S VRP+K++ARMP+TQF    +KS P               P
Sbjct: 456 ASSLEGELSKGNGLSSRASSVRPRKVRARMPRTQFFHRRIKSGPASVSLFSILLVITRFP 515

[Close]

BLAST of IVF0023458 vs. ExPASy TrEMBL
Match: A0A5D3CV18 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00790 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 54/114 (47.37%), Postives = 60/114 (52.63%), Query Frame = 0


Query: 3   FSKGNRLSSRTSSVRPGKCERECTGLSFSITSIDWEASSLVGELRWNLERSTRRPMLFER 62
           F +G RLSSRTS  R  K                 EASSL  ELR N ERS R PMLF R
Sbjct: 169 FQQGKRLSSRTSGFRHKK----------------REASSLERELRCNPERSKRWPMLFHR 228

Query: 63  LANGPPVSETI-------LNRLSLRTSGVRPKKMQARMPQTQFSLSGVKSVPPP 110
           + N    SE I        N LS  TSGVRP+K++ARM +TQF   GVK  P P
Sbjct: 229 VVNALQASELIGSGTKLKGNGLSSMTSGVRPRKVRARMLRTQFFNHGVKDHPTP 266

[Close]

BLAST of IVF0023458 vs. ExPASy TrEMBL
Match: A0A5D3DFP2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00220 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.1e-08
Identity = 48/96 (50.00%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 70  SETILNRLSLRTSGVRPKKMQARMPQTQFSLSGVKSVPPPRRSRTSSVHQKKMRARMPRT 129
           S+T+     L TSG R   ++ +   T    +G+        SRTS    KK RARMP+T
Sbjct: 249 SKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLS-------SRTSGARPKKTRARMPQT 308

Query: 130 QFSRLGVKSGAPTVSFLCFVFVISLSIFGARTPRTS 166
           QFSR G KS  PTVS LC V V SLSIFGA TPRTS
Sbjct: 309 QFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTS 337

[Close]

BLAST of IVF0023458 vs. ExPASy TrEMBL
Match: A0A5A7VGQ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold638G00090 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.8e-08
Identity = 57/138 (41.30%), Postives = 64/138 (46.38%), Query Frame = 0


Query: 34  SIDWEASSLVGELRWNLERSTRRPMLFERLANGPPVSETIL------NRLSLRTSGVRPK 93
           SI  E S L GELR NLER  R  MLF+R+A      + +       N LS RTSGV P+
Sbjct: 54  SIVQEVSLLGGELRCNLERPKRWLMLFQRVATLVWCQKPLKMHFSKGNELSSRTSGVYPR 113

Query: 94  KMQARMPQTQFSLSGVKSVPPPRRSRTSSVHQKKMRARMPRTQFSRLGVKSGAPTVSFLC 153
           K+QARM QTQF                                F R G+KSG  TVS  C
Sbjct: 114 KVQARMSQTQF--------------------------------FHR-GLKSGPATVSLFC 158

Query: 154 FVFVISLSIFGARTPRTS 166
            V VIS S F  R PR S
Sbjct: 174 VVLVISASSFETRAPRIS 158

[Close]

BLAST of IVF0023458 vs. NCBI nr
Match: KAA0062888.1 (non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa] >TYK22520.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 7.22e-14
Identity = 79/220 (35.91%), Postives = 89/220 (40.45%), Query Frame = 0


Query: 5    KGNRLSSRTSSVRPGKCERECTGLSFSITSIDW---EASSLVGELRWNLER-STRRPMLF 64
            +GN L+SRTSS RP K         FS           SSL   L  +L     R P   
Sbjct: 1106 EGNGLTSRTSSARPKKTRARMPRTQFSQPGAKSGLPTVSSLCSVLVISLSIFGARTPRTS 1165

Query: 65   ERLANGPPVSETILNRLSLRTSGVRPKKMQARMPQTQFSLSGVKSVPPP----------R 124
                   P +E   N L+  TSG RPKK +AR+P TQFS    KS PP           +
Sbjct: 1166 THTPGMLPDTEE--NELTSTTSGARPKKTRARLPWTQFSRPTAKSGPPTVSSLCSVLVKK 1225

Query: 125  RSR---------------------------------------------TSSVHQKKMRAR 165
            R+R                                             TS    KK RAR
Sbjct: 1226 RARWRKNCVATQNGLADGQCFQRVANARPVSETTENALAAKQNGLTSMTSRARPKKTRAR 1285

[Close]

BLAST of IVF0023458 vs. NCBI nr
Match: TYJ98800.1 (uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 4.67e-12
Identity = 63/171 (36.84%), Postives = 77/171 (45.03%), Query Frame = 0


Query: 35  IDWEASSLVGELR-WNLERSTRRPMLFERLANGPPVSETIL-------------NRLSLR 94
           I WE SSL GEL  W+ +    +  ++       P S+ I              N LS R
Sbjct: 413 IGWEVSSLEGELSAWSFKTCAPKTSIYVPGIVPHPFSQGIGREASSLEGELSKGNGLSSR 472

Query: 95  TSGVRPKKMQARMPQTQFSLSGVKSVPP--------------PRR-------------SR 154
            S VRP+K++ARMP+TQF    +KS P               P++             SR
Sbjct: 473 ASSVRPRKVRARMPRTQFFHRRIKSGPASVSLFSILLVITRFPKKPLKMLFSEGNRLSSR 532

Query: 155 TSSVHQKKMRARMPRTQFSRLGVKSGAPTVSFLCFVFVISLSIFGARTPRT 164
           TS V  +K RARMPRTQ     VKSG   VS  C V VIS S F    PRT
Sbjct: 533 TSGVRPRKERARMPRTQLFHCEVKSGYAIVSLFCVVLVISASRFRIHAPRT 583

[Close]

BLAST of IVF0023458 vs. NCBI nr
Match: KAA0047414.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 72.8 bits (177), Expect = 2.90e-11
Identity = 54/114 (47.37%), Postives = 60/114 (52.63%), Query Frame = 0


Query: 3   FSKGNRLSSRTSSVRPGKCERECTGLSFSITSIDWEASSLVGELRWNLERSTRRPMLFER 62
           F +G RLSSRTS  R  K E                ASSL  ELR N ERS R PMLF R
Sbjct: 169 FQQGKRLSSRTSGFRHKKRE----------------ASSLERELRCNPERSKRWPMLFHR 228

Query: 63  LANGPPVSETIL-------NRLSLRTSGVRPKKMQARMPQTQFSLSGVKSVPPP 109
           + N    SE I        N LS  TSGVRP+K++ARM +TQF   GVK  P P
Sbjct: 229 VVNALQASELIGSGTKLKGNGLSSMTSGVRPRKVRARMLRTQFFNHGVKDHPTP 266

[Close]

BLAST of IVF0023458 vs. NCBI nr
Match: TYK22521.1 (uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 7.39e-11
Identity = 48/96 (50.00%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 70  SETILNRLSLRTSGVRPKKMQARMPQTQFSLSGVKSVPPPRRSRTSSVHQKKMRARMPRT 129
           S+T+     L TSG R   ++ +   T    +G+ S       RTS    KK RARMP+T
Sbjct: 249 SKTVQRWPMLPTSGERSSGVRNQWKCTCIEGNGLSS-------RTSGARPKKTRARMPQT 308

Query: 130 QFSRLGVKSGAPTVSFLCFVFVISLSIFGARTPRTS 165
           QFSR G KS  PTVS LC V V SLSIFGA TPRTS
Sbjct: 309 QFSRPGPKSDPPTVSTLCSVLVRSLSIFGAPTPRTS 337

[Close]

BLAST of IVF0023458 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.5 bits (171), Expect = 1.67e-10
Identity = 39/54 (72.22%), Postives = 40/54 (74.07%), Query Frame = 0


Query: 112 SRTSSVHQKKMRARMPRTQFSRLGVKSGAPTVSFLCFVFVISLSIFGARTPRTS 165
           SRTSSV  KK RARMP+T  S  G KS  P VS LCFV VISLSIFGARTPR S
Sbjct: 28  SRTSSVRLKKTRARMPQTLVSHPGAKSRPPMVSSLCFVLVISLSIFGARTPRNS 81

The following BLAST results are available for this feature:

BLAST of IVF0023458 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023458 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V5J2	1.0e-11	79.63	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]
A0A5D3BG85	5.1e-11	32.26	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CV18	2.2e-09	47.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G0079...	[more]
A0A5D3DFP2	1.1e-08	50.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VGQ5	1.8e-08	41.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0023458 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062888.1	7.22e-14	35.91	non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuw...	[more]
TYJ98800.1	4.67e-12	36.84	uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]	[more]
KAA0047414.1	2.90e-11	47.37	gag/pol protein [Cucumis melo var. makuwa] >TYK14089.1 gag/pol protein [Cucumis ...	[more]
TYK22521.1	7.39e-11	50.00	uncharacterized protein E5676_scaffold387G00220 [Cucumis melo var. makuwa]	[more]
TYK23423.1	1.67e-10	72.22	DUF4283 domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023458 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 100..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023458.1	IVF0023458.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005840	ribosome
molecular_function	GO:0046872	metal ion binding