IVF0023456 (gene) Melon (IVF77) v1

Overview
NameIVF0023456
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionReverse transcriptase
Locationtig00007088: 1252584 .. 1252922 (+)
RNA-Seq ExpressionIVF0023456
SyntenyIVF0023456
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAGACCTCGTACTTGGGATTTCCTCTTGGAAGATCAATCCCCATGCCATTGGCTCAGTCTCTGGTAGTAAGGAGGAGTAATCCGAGAGTGGTTCAAGCTAAGATCAAGCAATGGGGTGAGAATGAGAAAAGCCCTGCAAGGCTCAGCCCACTGGCTATCCCCTTCTTGGATGAGCAAATTGAAGCTGGGTCTGTCCCAGTAGAGATCCAGGAAGTTCTGAATGAGTACGTTGATATAATGCCGCGAAGACCTTGCCCACGTGGGATTGATCATGAGATTGAACTTGTCCCAGGAGCCAAACCCCCAGCTCAAAATGCCTACCGAATGGCTTAG

mRNA sequence

ATGGATGAGACCTCGTACTTGGGATTTCCTCTTGGAAGATCAATCCCCATGCCATTGGCTCAGTCTCTGGTAGTAAGGAGGAGTAATCCGAGAGTGGTTCAAGCTAAGATCAAGCAATGGGGTGAGAATGAGAAAAGCCCTGCAAGGCTCAGCCCACTGGCTATCCCCTTCTTGGATGAGCAAATTGAAGCTGGGTCTGTCCCAGTAGAGATCCAGGAAGTTCTGAATGAGTACGTTGATATAATGCCGCGAAGACCTTGCCCACGTGGGATTGATCATGAGATTGAACTTGTCCCAGGAGCCAAACCCCCAGCTCAAAATGCCTACCGAATGGCTTAG

Coding sequence (CDS)

ATGGATGAGACCTCGTACTTGGGATTTCCTCTTGGAAGATCAATCCCCATGCCATTGGCTCAGTCTCTGGTAGTAAGGAGGAGTAATCCGAGAGTGGTTCAAGCTAAGATCAAGCAATGGGGTGAGAATGAGAAAAGCCCTGCAAGGCTCAGCCCACTGGCTATCCCCTTCTTGGATGAGCAAATTGAAGCTGGGTCTGTCCCAGTAGAGATCCAGGAAGTTCTGAATGAGTACGTTGATATAATGCCGCGAAGACCTTGCCCACGTGGGATTGATCATGAGATTGAACTTGTCCCAGGAGCCAAACCCCCAGCTCAAAATGCCTACCGAATGGCTTAG

Protein sequence

MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
Homology
[Close]
BLAST of IVF0023456 vs. ExPASy TrEMBL
Match: A0A5A7T1J5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46581G00050 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.6e-57
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60
           MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE
Sbjct: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60

Query: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 113
           QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
Sbjct: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 112

[Close]
BLAST of IVF0023456 vs. ExPASy TrEMBL
Match: A0A5A7VNF6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G001440 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.3e-48
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60
           MDETSYLGFPLGRSIPMPLAQSLVV+RSNP VVQAKIKQ GEN+KSPARL+PLAIPFL E
Sbjct: 1   MDETSYLGFPLGRSIPMPLAQSLVVKRSNPIVVQAKIKQQGENKKSPARLNPLAIPFLHE 60

Query: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 113
           QIE GS+PV+IQEVLNEYVDIM +RPCP GIDHEIELVP AKPPAQNAYRMA
Sbjct: 61  QIEVGSIPVKIQEVLNEYVDIMFQRPCPHGIDHEIELVPKAKPPAQNAYRMA 112

[Close]
BLAST of IVF0023456 vs. ExPASy TrEMBL
Match: A0A5D3BD02 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold81732G00010 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 1.1e-46
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 17  MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLN 76
           MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLN
Sbjct: 1   MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLN 60

Query: 77  EYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 113
           EYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
Sbjct: 61  EYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 96

[Close]
BLAST of IVF0023456 vs. ExPASy TrEMBL
Match: A0A5A7VIA0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002590 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.4e-46
Identity = 97/112 (86.61%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60
           MDE SYLGF LGR IPMPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDE
Sbjct: 85  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDE 144

Query: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 113
           QIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP AKPPAQNAY+MA
Sbjct: 145 QIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPRAKPPAQNAYQMA 196

[Close]
BLAST of IVF0023456 vs. ExPASy TrEMBL
Match: A0A5A7VDT8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G001250 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 3.8e-20
Identity = 65/113 (57.52%), Postives = 74/113 (65.49%), Query Frame = 0 

Query: 15  IPMPLAQSLVVRRSNPRVVQAKIKQWG----------ENEKSPARLSPLAIPFLDEQIEA 74
           IPMPLAQ LVV  SN  VVQAKIKQ            +N  S    + +AI  +DEQIE 
Sbjct: 19  IPMPLAQCLVVTSSNSTVVQAKIKQLSGVRMISVLQLKNGFSREEPTFMAISLVDEQIEI 78

Query: 75  GSVPVEIQEVLNEYVDIM-----PRRPCPRGIDHEIELVPGAKPPAQNAYRMA 113
           G+VPVEI++VLNEYVDI+        P  RGIDH IELVPGAKPP +NAYRMA
Sbjct: 79  GTVPVEIRKVLNEYVDILLPELSRSLPPRRGIDHNIELVPGAKPPTKNAYRMA 131

[Close]
BLAST of IVF0023456 vs. NCBI nr
Match: KAA0036096.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 229 bits (583), Expect = 1.25e-75
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0 

Query: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60
           MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE
Sbjct: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60

Query: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 112
           QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
Sbjct: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 112

[Close]
BLAST of IVF0023456 vs. NCBI nr
Match: KAA0066799.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK27946.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (508), Expect = 3.46e-64
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0 

Query: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60
           MDETSYLGFPLGRSIPMPLAQSLVV+RSNP VVQAKIKQ GEN+KSPARL+PLAIPFL E
Sbjct: 1   MDETSYLGFPLGRSIPMPLAQSLVVKRSNPIVVQAKIKQQGENKKSPARLNPLAIPFLHE 60

Query: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 112
           QIE GS+PV+IQEVLNEYVDIM +RPCP GIDHEIELVP AKPPAQNAYRMA
Sbjct: 61  QIEVGSIPVKIQEVLNEYVDIMFQRPCPHGIDHEIELVPKAKPPAQNAYRMA 112

[Close]
BLAST of IVF0023456 vs. NCBI nr
Match: TYJ96846.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (496), Expect = 1.41e-62
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 17  MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLN 76
           MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLN
Sbjct: 1   MPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDEQIEAGSVPVEIQEVLN 60

Query: 77  EYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 112
           EYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA
Sbjct: 61  EYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 96

[Close]
BLAST of IVF0023456 vs. NCBI nr
Match: KAA0066867.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK28014.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 194 bits (493), Expect = 1.01e-60
Identity = 97/112 (86.61%), Postives = 100/112 (89.29%), Query Frame = 0 

Query: 1   MDETSYLGFPLGRSIPMPLAQSLVVRRSNPRVVQAKIKQWGENEKSPARLSPLAIPFLDE 60
           MDE SYLGF LGR IPMPLAQSLVVRRSN  VVQAKIKQWGENE SP RLSPL +PFLDE
Sbjct: 85  MDEASYLGFLLGRLIPMPLAQSLVVRRSNLNVVQAKIKQWGENENSPVRLSPLVVPFLDE 144

Query: 61  QIEAGSVPVEIQEVLNEYVDIMPRRPCPRGIDHEIELVPGAKPPAQNAYRMA 112
           QIEAGSV VEIQ+VLNEYVDIM RRPCP GIDHEIELVP AKPPAQNAY+MA
Sbjct: 145 QIEAGSVQVEIQKVLNEYVDIMQRRPCPCGIDHEIELVPRAKPPAQNAYQMA 196

[Close]
BLAST of IVF0023456 vs. NCBI nr
Match: KAA0065444.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (267), Expect = 1.15e-26
Identity = 65/113 (57.52%), Postives = 74/113 (65.49%), Query Frame = 0 

Query: 15  IPMPLAQSLVVRRSNPRVVQAKIKQWG----------ENEKSPARLSPLAIPFLDEQIEA 74
           IPMPLAQ LVV  SN  VVQAKIKQ            +N  S    + +AI  +DEQIE 
Sbjct: 19  IPMPLAQCLVVTSSNSTVVQAKIKQLSGVRMISVLQLKNGFSREEPTFMAISLVDEQIEI 78

Query: 75  GSVPVEIQEVLNEYVDIMPRR-----PCPRGIDHEIELVPGAKPPAQNAYRMA 112
           G+VPVEI++VLNEYVDI+        P  RGIDH IELVPGAKPP +NAYRMA
Sbjct: 79  GTVPVEIRKVLNEYVDILLPELSRSLPPRRGIDHNIELVPGAKPPTKNAYRMA 131

The following BLAST results are available for this feature:
BLAST of IVF0023456 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023456 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T1J58.6e-57100.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46... [more]
A0A5A7VNF64.3e-4888.39Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5D3BD021.1e-46100.00Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold81... [more]
A0A5A7VIA02.4e-4686.61Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38... [more]
A0A5A7VDT83.8e-2057.52Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17... [more]
BLAST of IVF0023456 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036096.11.25e-75100.00reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066799.13.46e-6488.39reverse transcriptase [Cucumis melo var. makuwa] >TYK27946.1 reverse transcripta... [more]
TYJ96846.11.41e-62100.00reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0066867.11.01e-6086.61reverse transcriptase [Cucumis melo var. makuwa] >TYK28014.1 reverse transcripta... [more]
KAA0065444.11.15e-2657.52reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of IVF0023456 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023456.1IVF0023456.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity