IVF0023448 (gene) Melon (IVF77) v1

Overview
NameIVF0023448
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCCHC-type domain-containing protein
Locationchr11: 23589226 .. 23589642 (-)
RNA-Seq ExpressionIVF0023448
SyntenyIVF0023448
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAGCCAAAGTAGAAGCAAAGAAGGACAAGAACGCGCGCGCATATATTCTTCAATGCATCCCGAAAGACGTGCTTCTACAAATTGCAAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGGAGAAGTACTTGGGCAGCGAGCGGGTGAAGATGGCACGAGTTCAAACCTTGAAGAGAGAGTTTGATGTTCTTCAGATGAAGGAGACCGAGACGATCGATGAGTTCGCAGGAAAAATCAGCGGTCTAGCAAGCAAGTTCTCCACCCTCGGTGTTGCACTTGAGGATTCATCGTTGGTCAAGAAGCTTCTCGACTCCGTCCCTAACAAATATCTTCCCATTATCGCAGGAATCGAGCAATCCAAGATCTCCACACCATGCCATTTGAAGAAGCGATCGGACGAATGA

mRNA sequence

ATGAAAGAAGCCAAAGTAGAAGCAAAGAAGGACAAGAACGCGCGCGCATATATTCTTCAATGCATCCCGAAAGACGTGCTTCTACAAATTGCAAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGGAGAAGTACTTGGGCAGCGAGCGGGTGAAGATGGCACGAGTTCAAACCTTGAAGAGAGAGTTTGATGTTCTTCAGATGAAGGAGACCGAGACGATCGATGAGTTCGCAGGAAAAATCAGCGGTCTAGCAAGCAAGTTCTCCACCCTCGGTGTTGCACTTGAGGATTCATCGTTGGTCAAGAAGCTTCTCGACTCCGTCCCTAACAAATATCTTCCCATTATCGCAGGAATCGAGCAATCCAAGATCTCCACACCATGCCATTTGAAGAAGCGATCGGACGAATGA

Coding sequence (CDS)

ATGAAAGAAGCCAAAGTAGAAGCAAAGAAGGACAAGAACGCGCGCGCATATATTCTTCAATGCATCCCGAAAGACGTGCTTCTACAAATTGCAAAGAAGAAGACCGCAAAGGAAATATGGGATAGTCTCAAGGAGAAGTACTTGGGCAGCGAGCGGGTGAAGATGGCACGAGTTCAAACCTTGAAGAGAGAGTTTGATGTTCTTCAGATGAAGGAGACCGAGACGATCGATGAGTTCGCAGGAAAAATCAGCGGTCTAGCAAGCAAGTTCTCCACCCTCGGTGTTGCACTTGAGGATTCATCGTTGGTCAAGAAGCTTCTCGACTCCGTCCCTAACAAATATCTTCCCATTATCGCAGGAATCGAGCAATCCAAGATCTCCACACCATGCCATTTGAAGAAGCGATCGGACGAATGA

Protein sequence

MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQSKISTPCHLKKRSDE
Homology
BLAST of IVF0023448 vs. ExPASy TrEMBL
Match: A0A5A7SWG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G001050 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.9e-67
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0

Query: 1   MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQT 60
           MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQT
Sbjct: 1   MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQT 60

Query: 61  LKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAG 120
           LKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAG
Sbjct: 61  LKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAG 120

Query: 121 IEQSKISTPCHLKKRSDE 139
           IEQSKISTPCHLKKRSDE
Sbjct: 121 IEQSKISTPCHLKKRSDE 138

BLAST of IVF0023448 vs. ExPASy TrEMBL
Match: A0A5D3B9D8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00390 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 3.2e-37
Identity = 88/110 (80.00%), Postives = 97/110 (88.18%), Query Frame = 0

Query: 14  ARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKREFDVLQMKET 73
           A  YILQCIPKDVLLQIA+KKTAK+IWDSLK +YLGS++VKMARVQTLK  FDVL+MKET
Sbjct: 2   ACVYILQCIPKDVLLQIARKKTAKKIWDSLKTRYLGSKQVKMARVQTLKSVFDVLRMKET 61

Query: 74  ETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
           ETI+EF  KI+ LASKFSTLGVALEDSSLVKKLLD V  KYLPI  GI+Q
Sbjct: 62  ETIEEFTEKINRLASKFSTLGVALEDSSLVKKLLDFVLKKYLPIDVGIKQ 111

BLAST of IVF0023448 vs. ExPASy TrEMBL
Match: A0A5N6MA89 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_33044 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-34
Identity = 75/119 (63.03%), Postives = 101/119 (84.87%), Query Frame = 0

Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKREF 65
           V+ KK K ARA++ Q IP+DVLLQ+AKKKTAKE+W+SLK +YLG++RV+ AR+ TLK EF
Sbjct: 641 VDEKKSKTARAFLFQAIPEDVLLQVAKKKTAKEVWESLKLRYLGADRVQKARLNTLKSEF 700

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQS 125
           D L+M+ETE+IDE+AGK+S + SK S+LG  LEDS +V+KLLD+VP+KYL ++A IEQ+
Sbjct: 701 DALRMRETESIDEYAGKLSAMISKHSSLGQTLEDSMVVRKLLDTVPDKYLQLVASIEQT 759

BLAST of IVF0023448 vs. ExPASy TrEMBL
Match: A0A5N6NYJ8 (CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_16352 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 2.0e-34
Identity = 73/120 (60.83%), Postives = 103/120 (85.83%), Query Frame = 0

Query: 4   AKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKR 63
           A V+ KK+K +RA+I Q IP+DVLLQ+AKKKTAKEIWDSLK +Y+G++RV+ AR+ TLK 
Sbjct: 463 AAVDEKKNKTSRAFIFQAIPEDVLLQVAKKKTAKEIWDSLKIRYMGADRVQKARLHTLKN 522

Query: 64  EFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 123
           EF++L+MKE E++DEFAGK++G+ +K+++LG  ++D  LV+KLLDSVP+KYL ++A IEQ
Sbjct: 523 EFELLKMKEGESVDEFAGKLAGMVTKYNSLGYTIKDEDLVRKLLDSVPDKYLQLVASIEQ 582

BLAST of IVF0023448 vs. ExPASy TrEMBL
Match: Q0JH75 (Os01g0879800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0879800 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 3.3e-34
Identity = 79/118 (66.95%), Postives = 96/118 (81.36%), Query Frame = 0

Query: 6   VEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKREF 65
           V+ KKDK ARA +   +P+DVL QIAKKKTAKE+W+SLK ++LG ERVK ARVQTLK +F
Sbjct: 66  VDIKKDKQARACLFGAVPEDVLQQIAKKKTAKEVWESLKTRFLGVERVKKARVQTLKSDF 125

Query: 66  DVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 124
             L MK+TE+IDEFAGKISGLA+K S LGV ++D   VKKLLDSVP+K+L +IA IEQ
Sbjct: 126 KALHMKDTESIDEFAGKISGLANKLSDLGVTMDDDEQVKKLLDSVPDKFLHVIAAIEQ 183

BLAST of IVF0023448 vs. NCBI nr
Match: KAA0033515.1 (hypothetical protein E6C27_scaffold261G00580 [Cucumis melo var. makuwa] >TYJ95673.1 hypothetical protein E5676_scaffold104G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 262 bits (670), Expect = 4.64e-88
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0

Query: 1   MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQT 60
           MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQT
Sbjct: 1   MKEAKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQT 60

Query: 61  LKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAG 120
           LKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAG
Sbjct: 61  LKREFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAG 120

Query: 121 IEQSKISTPCHLKKRSDE 138
           IEQSKISTPCHLKKRSDE
Sbjct: 121 IEQSKISTPCHLKKRSDE 138

BLAST of IVF0023448 vs. NCBI nr
Match: XP_031737549.1 (uncharacterized protein LOC116402439 [Cucumis sativus])

HSP 1 Score: 202 bits (514), Expect = 3.25e-62
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 0

Query: 4   AKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKR 63
           A+V+ KKDK AR+YILQCIP+DVLLQIAKKKTAKEIWDSLK +YLGSERVKMARVQTLK 
Sbjct: 52  AEVDVKKDKKARSYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKS 111

Query: 64  EFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 123
           EF VL+MKETETIDEFAGKISGLASKF+TLGVALEDSSLVKKLLDSVP+KYLPI+ GIEQ
Sbjct: 112 EFSVLRMKETETIDEFAGKISGLASKFTTLGVALEDSSLVKKLLDSVPDKYLPIVVGIEQ 171

BLAST of IVF0023448 vs. NCBI nr
Match: XP_031745073.1 (uncharacterized protein LOC116405251 [Cucumis sativus])

HSP 1 Score: 201 bits (510), Expect = 4.38e-60
Identity = 105/120 (87.50%), Postives = 115/120 (95.83%), Query Frame = 0

Query: 4   AKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKR 63
           A+V+ KKDK A AYILQCIP+DVLLQIAKKKTAKEIWDSLK +YLGSERVKMARVQTLKR
Sbjct: 52  AEVDVKKDKKACAYILQCIPEDVLLQIAKKKTAKEIWDSLKTRYLGSERVKMARVQTLKR 111

Query: 64  EFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 123
           EF+VL+MKETE IDEFAGKISGLASKF+TLGVAL+DSSLVKKLLDSVP+KYLPI+AGIEQ
Sbjct: 112 EFNVLRMKETEMIDEFAGKISGLASKFTTLGVALKDSSLVKKLLDSVPDKYLPIVAGIEQ 171

BLAST of IVF0023448 vs. NCBI nr
Match: XP_042415668.1 (uncharacterized protein LOC122004893 [Zingiber officinale])

HSP 1 Score: 192 bits (487), Expect = 2.33e-58
Identity = 96/120 (80.00%), Postives = 111/120 (92.50%), Query Frame = 0

Query: 4   AKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKR 63
           A+V+AKKDK ARAYILQC+P+D++LQIA KKTAKE+WDSLK +YLGS+RVK ARVQTLK 
Sbjct: 50  AQVDAKKDKKARAYILQCVPEDIILQIATKKTAKEVWDSLKTRYLGSDRVKKARVQTLKS 109

Query: 64  EFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 123
           EFD L+MKETETIDEFAGK+S L+SKFSTLGV LEDSSLVKKLLDSVP+K+ PI+AGIEQ
Sbjct: 110 EFDALRMKETETIDEFAGKLSALSSKFSTLGVTLEDSSLVKKLLDSVPDKFFPIVAGIEQ 169

BLAST of IVF0023448 vs. NCBI nr
Match: XP_042466020.1 (uncharacterized protein LOC122048530 [Zingiber officinale])

HSP 1 Score: 190 bits (482), Expect = 3.03e-58
Identity = 95/120 (79.17%), Postives = 110/120 (91.67%), Query Frame = 0

Query: 4   AKVEAKKDKNARAYILQCIPKDVLLQIAKKKTAKEIWDSLKEKYLGSERVKMARVQTLKR 63
           A+V+AKKDK ARAYILQC+P+D+LLQIA KKTAKE+WD+LK +YLGS+RVK ARVQTLK 
Sbjct: 50  AQVDAKKDKKARAYILQCVPEDILLQIATKKTAKEVWDNLKTRYLGSDRVKKARVQTLKS 109

Query: 64  EFDVLQMKETETIDEFAGKISGLASKFSTLGVALEDSSLVKKLLDSVPNKYLPIIAGIEQ 123
           EFD L+MKETETIDEFAGK+S L+SKFSTLG  LEDSSLVKKLLDSVP+K+ PI+AGIEQ
Sbjct: 110 EFDALRMKETETIDEFAGKLSALSSKFSTLGATLEDSSLVKKLLDSVPDKFFPIVAGIEQ 169

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7SWG63.9e-67100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3B9D83.2e-3780.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5N6MA892.0e-3463.03Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_33044 PE=3 SV=1[more]
A0A5N6NYJ82.0e-3460.83CCHC-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_1635... [more]
Q0JH753.3e-3466.95Os01g0879800 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0879800 PE... [more]
Match NameE-valueIdentityDescription
KAA0033515.14.64e-88100.00hypothetical protein E6C27_scaffold261G00580 [Cucumis melo var. makuwa] >TYJ9567... [more]
XP_031737549.13.25e-6287.50uncharacterized protein LOC116402439 [Cucumis sativus][more]
XP_031745073.14.38e-6087.50uncharacterized protein LOC116405251 [Cucumis sativus][more]
XP_042415668.12.33e-5880.00uncharacterized protein LOC122004893 [Zingiber officinale][more]
XP_042466020.13.03e-5879.17uncharacterized protein LOC122048530 [Zingiber officinale][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 9..129
e-value: 7.3E-22
score: 77.6
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 4..124
NoneNo IPR availablePANTHERPTHR34676:SF11ZINC FINGER, CCHC-TYPE-RELATEDcoord: 4..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023448.1IVF0023448.1mRNA