Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACAGATACGAGTAACCCAATTTGAGCATTTTTCTGTAACTTCCATAACTTTTGAACAGATTGTTGGGTCATAGGACAAATTTGAATCTGAGTTTTCCCTTTCTTCTTAGTTGAAAGAAGCTTTTATATCATAGCAAAGGCAGGGAAGTTTCCAAATGAACAAGTTACGACTTCAAACGAAAGGCTTAAAGATCTGCATGATGTATCGGGAGAGGCTTGGAGGGTAAGAAATGCAGGGCAAAAGGTTTGGATGATCCAACATGTTGGAGAAGCAATATGAAGGATAAAGAAGAGCTTGCTAGTACTCTTTATGGAGGAAGTAACTATTGGCCATATCGAATGAAGTTGACAACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCGGAATCAAAGGAATTCGAGGAACTGCTTTCAAAGAACATGAATGAAGGAAGCTATAGAGATTTGGCTGAGATGATCCCTATTGAAGTATCAATCTATGATGTTGATATCTGTGAAACTTTTAGGGTGAAGTTGGTGAAGAAAGAGGCATTTTGGTTTGAACCATTGCCTCTAGTTGGTGAGAAGTCAAAGAAGGATAAGTTTGGTTCTCATTCCACTGCAAAATTGAATGGCAAGTCCTACCAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGCCACATTATAAAGAAGCGGGGCCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAGCGATGGATCGGTTTGACTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTAAACAACTTGATGATCTAAGAACTTAATAGCATGAATTTGATGATTTTGTTTATCACCTTGTTTCAAGAACATTTAATAGATAACTGTTAGGATTTTAGAGATTGCAATCAACCGTTTTCAAATGTGG
mRNA sequence
AAACAGATACGAGTAACCCAATTTGAGCATTTTTCTGTAACTTCCATAACTTTTGAACAGATTGTTGGGTCATAGGACAAATTTGAATCTGAGTTTTCCCTTTCTTCTTAGTTGAAAGAAGCTTTTATATCATAGCAAAGGCAGGGAAGTTTCCAAATGAACAAGTTACGACTTCAAACGAAAGGCTTAAAGATCTGCATGATGTATCGGGAGAGGCTTGGAGGGTAAGAAATGCAGGGCAAAAGGTTTGGATGATCCAACATGTTGGAGAAGCAATATGAAGGATAAAGAAGAGCTTGCTAGTACTCTTTATGGAGGAAGTAACTATTGGCCATATCGAATGAAGTTGACAACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCGGAATCAAAGGAATTCGAGGAACTGCTTTCAAAGAACATGAATGAAGGAAGCTATAGAGATTTGGCTGAGATGATCCCTATTGAAGTATCAATCTATGATGTTGATATCTGTGAAACTTTTAGGGTGAAGTTGGTGAAGAAAGAGGCATTTTGGTTTGAACCATTGCCTCTAGTTGGTGAGAAGTCAAAGAAGGATAAGTTTGGTTCTCATTCCACTGCAAAATTGAATGGCAAGTCCTACCAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGCCACATTATAAAGAAGCGGGGCCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAGCGATGGATCGGTTTGACTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTAAACAACTTGATGATCTAAGAACTTAATAGCATGAATTTGATGATTTTGTTTATCACCTTGTTTCAAGAACATTTAATAGATAACTGTTAGGATTTTAGAGATTGCAATCAACCGTTTTCAAATGTGG
Coding sequence (CDS)
ATGAAGGATAAAGAAGAGCTTGCTAGTACTCTTTATGGAGGAAGTAACTATTGGCCATATCGAATGAAGTTGACAACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCGGAATCAAAGGAATTCGAGGAACTGCTTTCAAAGAACATGAATGAAGGAAGCTATAGAGATTTGGCTGAGATGATCCCTATTGAAGTATCAATCTATGATGTTGATATCTGTGAAACTTTTAGGGTGAAGTTGGTGAAGAAAGAGGCATTTTGGTTTGAACCATTGCCTCTAGTTGGTGAGAAGTCAAAGAAGGATAAGTTTGGTTCTCATTCCACTGCAAAATTGAATGGCAAGTCCTACCAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGCCACATTATAAAGAAGCGGGGCCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAGCGATGGATCGGTTTGACTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTAAACAACTTGATGATCTAA
Protein sequence
MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAEMIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Homology
BLAST of IVF0023382 vs. ExPASy TrEMBL
Match:
A0A5D3CFT9 (Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003770 PE=3 SV=1)
HSP 1 Score: 352.8 bits (904), Expect = 8.1e-94
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 641
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY+EK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756
BLAST of IVF0023382 vs. ExPASy TrEMBL
Match:
A0A5A7U6J2 (Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00030 PE=3 SV=1)
HSP 1 Score: 351.7 bits (901), Expect = 1.8e-93
Identity = 173/175 (98.86%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESK+FEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKQFEELLSKNMNEGSYRDLAE 641
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY+EK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756
BLAST of IVF0023382 vs. ExPASy TrEMBL
Match:
A0A0A0LWG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570130 PE=4 SV=1)
HSP 1 Score: 333.2 bits (853), Expect = 6.6e-88
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEELAST+YGGSNYWPYRMKLTTDQLRWDSLKISE KEFEELLSKNMNEGSYRDLAE
Sbjct: 16 MKDKEELASTIYGGSNYWPYRMKLTTDQLRWDSLKISEPKEFEELLSKNMNEGSYRDLAE 75
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIEVSIYDVDICETF+VKLVKKEAFWFEPLPLVGEKSKKDK SH+TAK +GKS++EK
Sbjct: 76 MIPIEVSIYDVDICETFKVKLVKKEAFWFEPLPLVGEKSKKDKLCSHATAKSSGKSHKEK 135
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
KEFVYSIEPFRHIIKKRGLDYQQEIG RWSGSK+MDRFDFSVLSSPRLSLNNLMI
Sbjct: 136 KEFVYSIEPFRHIIKKRGLDYQQEIGFRWSGSKSMDRFDFSVLSSPRLSLNNLMI 190
BLAST of IVF0023382 vs. ExPASy TrEMBL
Match:
A0A6J1HUG6 (uncharacterized protein LOC111467916 OS=Cucurbita maxima OX=3661 GN=LOC111467916 PE=4 SV=1)
HSP 1 Score: 260.0 bits (663), Expect = 7.1e-66
Identity = 130/174 (74.71%), Postives = 143/174 (82.18%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE EFEE++ +NMNEGSYRDL E
Sbjct: 82 MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEDTEFEEMMLRNMNEGSYRDLNE 141
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKSKK YQ
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSKK---------------YQ-- 201
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 175
FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFSVLSS RLSL L+
Sbjct: 202 SSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSVLSSSRLSLYTLI 238
BLAST of IVF0023382 vs. ExPASy TrEMBL
Match:
A0A6J1HA02 (uncharacterized protein LOC111461952 OS=Cucurbita moschata OX=3662 GN=LOC111461952 PE=4 SV=1)
HSP 1 Score: 259.6 bits (662), Expect = 9.3e-66
Identity = 128/174 (73.56%), Postives = 143/174 (82.18%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE EFEE++ +NMNEGSYRDL E
Sbjct: 82 MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 141
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKS K YQ
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKS--------------SKKYQ-- 201
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 175
FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFS+LSS RLS+ NL+
Sbjct: 202 SSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSILSSSRLSVYNLI 239
BLAST of IVF0023382 vs. NCBI nr
Match:
TYK10230.1 (root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 353 bits (906), Expect = 4.82e-115
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 641
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY+EK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 175
KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756
BLAST of IVF0023382 vs. NCBI nr
Match:
KGN66088.1 (hypothetical protein Csa_007428 [Cucumis sativus])
HSP 1 Score: 333 bits (855), Expect = 7.81e-115
Identity = 163/175 (93.14%), Postives = 170/175 (97.14%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEELAST+YGGSNYWPYRMKLTTDQLRWDSLKISE KEFEELLSKNMNEGSYRDLAE
Sbjct: 16 MKDKEELASTIYGGSNYWPYRMKLTTDQLRWDSLKISEPKEFEELLSKNMNEGSYRDLAE 75
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIEVSIYDVDICETF+VKLVKKEAFWFEPLPLVGEKSKKDK SH+TAK +GKS++EK
Sbjct: 76 MIPIEVSIYDVDICETFKVKLVKKEAFWFEPLPLVGEKSKKDKLCSHATAKSSGKSHKEK 135
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 175
KEFVYSIEPFRHIIKKRGLDYQQEIG RWSGSK+MDRFDFSVLSSPRLSLNNLMI
Sbjct: 136 KEFVYSIEPFRHIIKKRGLDYQQEIGFRWSGSKSMDRFDFSVLSSPRLSLNNLMI 190
BLAST of IVF0023382 vs. NCBI nr
Match:
KAA0050878.1 (root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa])
HSP 1 Score: 352 bits (903), Expect = 1.35e-114
Identity = 173/175 (98.86%), Postives = 175/175 (100.00%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESK+FEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKQFEELLSKNMNEGSYRDLAE 641
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSY+EK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 175
KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756
BLAST of IVF0023382 vs. NCBI nr
Match:
XP_022968782.1 (uncharacterized protein LOC111467916 [Cucurbita maxima])
HSP 1 Score: 261 bits (666), Expect = 2.45e-85
Identity = 130/174 (74.71%), Postives = 143/174 (82.18%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE EFEE++ +NMNEGSYRDL E
Sbjct: 82 MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEDTEFEEMMLRNMNEGSYRDLNE 141
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKSKK YQ
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSKK---------------YQS- 201
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 174
FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFSVLSS RLSL L+
Sbjct: 202 -SFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSVLSSSRLSLYTLI 238
BLAST of IVF0023382 vs. NCBI nr
Match:
XP_022961362.1 (uncharacterized protein LOC111461952 [Cucurbita moschata])
HSP 1 Score: 260 bits (665), Expect = 3.59e-85
Identity = 128/174 (73.56%), Postives = 143/174 (82.18%), Query Frame = 0
Query: 1 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE EFEE++ +NMNEGSYRDL E
Sbjct: 82 MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 141
Query: 61 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYQEK 120
MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKS K YQ
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKS--------------SKKYQS- 201
Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 174
FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFS+LSS RLS+ NL+
Sbjct: 202 -SFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSILSSSRLSVYNLI 239
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3CFT9 | 8.1e-94 | 99.43 | Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... | [more] |
A0A5A7U6J2 | 1.8e-93 | 98.86 | Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... | [more] |
A0A0A0LWG5 | 6.6e-88 | 93.14 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570130 PE=4 SV=1 | [more] |
A0A6J1HUG6 | 7.1e-66 | 74.71 | uncharacterized protein LOC111467916 OS=Cucurbita maxima OX=3661 GN=LOC111467916... | [more] |
A0A6J1HA02 | 9.3e-66 | 73.56 | uncharacterized protein LOC111461952 OS=Cucurbita moschata OX=3662 GN=LOC1114619... | [more] |
Match Name | E-value | Identity | Description | |
TYK10230.1 | 4.82e-115 | 99.43 | root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa] | [more] |
KGN66088.1 | 7.81e-115 | 93.14 | hypothetical protein Csa_007428 [Cucumis sativus] | [more] |
KAA0050878.1 | 1.35e-114 | 98.86 | root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa] | [more] |
XP_022968782.1 | 2.45e-85 | 74.71 | uncharacterized protein LOC111467916 [Cucurbita maxima] | [more] |
XP_022961362.1 | 3.59e-85 | 73.56 | uncharacterized protein LOC111461952 [Cucurbita moschata] | [more] |
Match Name | E-value | Identity | Description | |