IVF0023381 (gene) Melon (IVF77) v1

Overview


Name	IVF0023381
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr11: 25633454 .. 25633702 (+)
RNA-Seq Expression	IVF0023381
Synteny	IVF0023381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGGAAATGGTTTGAATGAAACGAGTTACGAATCCTTTAAGAAACATTGGTTTGCTCTCTTCAAAGCAATAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGGTTATTTTAGGAGATACCCTTTTAAATGTTTTATCTAGAATGGAGAAATCTGTTCCTTCCTAGAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCTGAGTAG

mRNA sequence

ATGCCTGGAAATGGTTTGAATGAAACGAGTTACGAATCCTTTAAGAAACATTGGTTTGCTCTCTTCAAAGCAATAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGGTTATTTTAGGAGATACCCTTTTAAATAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCTGAGTAG

Coding sequence (CDS)

ATGCCTGGAAATGGTTTGAATGAAACGAGTTACGAATCCTTTAAGAAACATTGGTTTGCTCTCTTCAAAGCAATAAGAGACATGAGTCTCCTCAAAAGCCTCATTTGGGTTATTTTAGGAGATACCCTTTTAAATAACAAAAGAAACTTGGCTTCACGTGTGAGAAGCCTTGGAAACCGTGAGGGTTTTAGGTCTAAATTTAAGCCTGAGTAG

Protein sequence

MPGNGLNETSYESFKKHWFALFKAIRDMSLLKSLIWVILGDTLLNNKRNLASRVRSLGNREGFRSKFKPE

Homology

[Close]

BLAST of IVF0023381 vs. ExPASy TrEMBL
Match: A0A0A0KAW7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148220 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.7e-23
Identity = 63/82 (76.83%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1  MPGNGLNETSYESFKKHWFALFKAIRDMSLLKSLIWVILGDTLLN------------NKR 60
          MPGNGL E S ESFKKH FALFKA RDMSLLKSLIW+IL DTLLN            NKR
Sbjct: 1  MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 60

Query: 61 NLASRVRSLGNREGFRSKFKPE 71
          NLASRVRSLGNREGFRSKFKPE
Sbjct: 61 NLASRVRSLGNREGFRSKFKPE 82

[Close]

BLAST of IVF0023381 vs. NCBI nr
Match: KAE8646894.1 (hypothetical protein Csa_020928 [Cucumis sativus])

HSP 1 Score: 114 bits (284), Expect = 3.39e-30
Identity = 63/82 (76.83%), Postives = 64/82 (78.05%), Query Frame = 0


Query: 1   MPGNGLNETSYESFKKHWFALFKAIRDMSLLKSLIWVILGDTLLN------------NKR 60
           MPGNGL E S ESFKKH FALFKA RDMSLLKSLIW+IL DTLLN            NKR
Sbjct: 79  MPGNGLKEMSCESFKKHGFALFKARRDMSLLKSLIWIILRDTLLNVLSRMEKSVPSWNKR 138

Query: 61  NLASRVRSLGNREGFRSKFKPE 70
           NLASRVRSLGNREGFRSKFKPE
Sbjct: 139 NLASRVRSLGNREGFRSKFKPE 160

The following BLAST results are available for this feature:

BLAST of IVF0023381 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023381 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAW7	8.7e-23	76.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G148220 PE=4 SV=1	[more]

BLAST of IVF0023381 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646894.1	3.39e-30	76.83	hypothetical protein Csa_020928 [Cucumis sativus]	[more]

BLAST of IVF0023381 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023381.2	IVF0023381.2	mRNA