IVF0023375 (gene) Melon (IVF77) v1

Overview


Name	IVF0023375
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	RNA-binding protein 24-A
Location	chr03: 20948472 .. 20952517 (-)
RNA-Seq Expression	IVF0023375
Synteny	IVF0023375

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCCTGGGAGACTCAGAGCGAAACTATGAGGCGCTACTTTGAGCAGTTTGGGAGATTCTTGAGGCTGTTGTTATAACGGATAAGAATACAGGGAGATCCAAAGGATATGGTTTTGTGAGTATTAATGGTTTTTACTTTAATAGGTTTTTGTTAACTTTATACTTTGTTTCTACTTTCTAAAAGTAATAGCCTAAGAACATTCGTTTTGATACCTTTTCTTTTCTACCAAGCTAGTCGTATCTAATTGTTTGATCATTAATATCTATATTGTTGACATTGGAATGACCTGAACGTTTGTTCCTGTTTACATGGAGGGTTTTAGGTGACTTTCCGGGATCCAGAGTCTGCTAGAAGAGCTTGTGCAGACCCTACCCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGTCGGCCTCGTCCACCTATATCTTTTGGTATTATTTACTTATTTGGTCTTTTATTGCTCAGAAAATCATGTTGTTAGTTCCTGTCTTGTGTATTTTTGTATGATCGGGGATTTTTCTTGGCATATGCGTTTTGTTCAAAGGAATTAATATTCACAAATTCCTGTTTTCTGTTTTTTAAAGCTCTAGATTGGTTGGTCTTTACTTTTACACCACTGTTTCTTACAGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGCATGCAACCTAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGGTATGTCTCTAAGGTTCCTCTTTGTGCATCCAAACCTGCCAATATATTCAAATTTTGTTATTTTGTATAACTCCAATCTTTTACGTTTTGCATTCCTATATCTCGACCTTTACATTTTGTAGTGTGACTCTGGGGATTTGTTCGCATTCAGAAGTTCGATATTATGATCTTTTATTTATTTTTCTTTTCTGGTTGCGATTAAATCTTATAGCAAATGAATGATATTGTCTAGTAACTTTAGATGTACATATACGCTTTCAGGTAGGGTATTTCATTTTTTGAGGACTACTACCTTGCATTTTTTTTTTTTTTTGACCTTATATCCTAGTTTTCATTGTTTCTTAAGATGGTTGATAGACACCACTTAGTTGGTATTCATTCACTGCACGCCAACTTAATGTTAGTATTTTTTTTTTGAAGTCATAAGGTATATTACCAATCACTATATGCAGCATTCCATGGGATATGTTTCTTTGTCACCTCCCAGAAATCAGGACTGGTACCTGATCAGTGATGTGACAAAGTAGGATTGGTAATTGCAGGAATAAGATAGAAGTTATACGAGGATGTGCCAAGACTAATGTAAATGAACGGGAAGAAGTATGGCTAGTATTATTGGAGAAGTTTCATATCTTGTTTTCACTTGCGTTTTATAGTTAATATTAAAAGTCAAGTTGGTAGGATTTGAGCTCTAGTCTCTAGTTAATTGGGATACCAAATATTTGTCTTCTGGTATCACAATGGACTATGGGTTGTTAAATGATTTCCTCCTGTTAAGTTTGCATTGTTCTGTTTATGCTACTACTTAAATTTCTGCTTTCATAATCCTATCTCTTGGAAATCTTTAAAATGTTTCCAATCATTCGTTTCCTTCCCATTTCTTTTGCAGTTATGCTACTTATGGACCTGAGTATGTCTACCCGCAGGTATCACTGTTGATATATTTACTTATGTCTGCAATTTTGTGTTTGGAGGGTGGATTTGGAAGTAGGGAAGGGTGATATGATGGGTGTCCTTAGAAATTTCTCAAGGTTTTTCATAGTTCTAGCATAATGTGCTCAGTGGTTTTGATTTTCTGTGTGTTGTATCCTTTGTCTAGGGTGGATACAACCCTTTCGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGTTATGGAGCAGTACATGGATACGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCTTTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGTATTTTGCTTTGTATGATGATTTGATTACTCTTGATTACAACATCGAGTAATGTGAATTTTGACTAGTCTTTTAGGCATTTTTCCTCGAATGTCTTATTTTATTATCATCAATTGGATATTATCTGTGTATTTATGTGATCTTTTTTAGTTCCTCCACTGGTTTGGTCCTTTGGTCTTTTTCTCGAGGCCATTTTTTTTCCTTCAATCATTTAATCTTTTGACCGTGCCTTTTTTAATTTTTTTAAGAATAACCGGTAAAACTTGTGTCCAATCGTTGCATTGACTTAGTTATGTGATGATAGTACTCTGAAGGTTAAAAAAAAAAATTCTGCTTTGAAGTGGCACCATCCAGTGAAGACAGTGCCATAGTGGACTCGAGACTGGATATTTTCTGGGGACAGTGAAGATTTGCTTTTTTTTTTGGCTGTGAAAACTTCTTTCATTCTAGAGGAATGAAAGTGCAACAGATGGGGAAGCCATTCCTGGGGATATTGAAATTTGTGCTATATTTTTTATCATCTGATGTAGAATGGGGAAAACTTAAATAATGTGGTTTGGCATGTGAAGACATGCTTGATTAGAAAAACATGTTTGTTTCATCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTCGTACAAGGTAGCGGTTCTGACCAAACATCTGGGTGAGGAGTTGATCAGGTAAACTTCAAATTTTTCTGTTTAGAATCAATATTTGAAATTTCTCTTCCTATCTTATCACCAGAAGTCTCTAACTGCAACTTGATGACATTTATAGGTATCAATAGATTGCAGCAGGACTTAGAGCAGCGGAACTGCTACTTGAGTGGCGGGCTTCGGATCTAGCCTTGCAAATAATTTATCATGCATTCTAGAGGTAGACTTATGTTCTGGGCATAGCTTTTTCGACAATTTCATATGTGATCAGGATGAAAACTATTTGAAAGCTGATGGTAAAATATTTTTGATGATTTCTTTGCCTGTCATATCATATTTCATATAAGCTTATAGCAGAATGGTAGGGTGTGCTTTTTAATATAAGTCCTGGACAAGGAGAACAACTAATCTTGGGGATTGGTAGTCACAATTCTCTGGTTTTATGTCAACGTGTGGTTGTAGAGAATGAGGTTGGTATAATTGGAGATGTGTTTGGATACTCATCAAAATGAGTGTGTACCTTAGGAACTAAGAACCAAGGACACTGACACGGGAAATGGGATACGACACAGCACAGCAATACGCCAATTATTTTAAAATGTAGGTCACGACACGGCGAGTACACATTATTTTTTATTTTATTTTTATTCTATATATATGCATATTCAGTTTTTCTATTAATTATTAAAAATAATATTTCTTTTAAAAGTAATATATAATAAAGAAGAAGGAAAAGACATTTAAAAGAAAAAAGTCCAAAACCTATTTTAAAAAGACCCAACGTGAAAAAATGTCAAGGCACAAAAGCCCATTTAAAGGTAAAAACCCTAACCCTAATGATGTTTCCTTCCCACCACCATTCTCTTTAACATCCACACGTTAGGTTCTGCTTAGTGCTTTCCCCCTTCCTCCTAGATTCTTCTCAATGACGCCAACCTCATCCTTTGTCATCGTTCAGCTGGACAACCCCGACTTTTCCTCCCTTCACCATCGCTTAGTCGGGTAAAAAAAACGGGCACGTTAAATTTTTTAATAGAAAGTTACAGCTTCTCGTGTCCTGAGGTGTCATCTGCATGTCTGGCCATGTCGAGAAGTTTCCTGCCTTGTTCGATATTACAAATTTAG

mRNA sequence

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCCTGGGAGACTCAGAGCGAAACTATGAGGCGCTACTTTGAGCAGTTTGGGAGATTCTTGAGGCTGTTAAGAGCTTGTGCAGACCCTACCCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGTCGGCCTCGTCCACCTATATCTTTTGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGCATGCAACCTAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTATGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTCGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGTTATGGAGCAGTACATGGATACGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCTTTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTCGTACAAGGTAGCGGTTCTGACCAAACATCTGGTTACAGCTTCTCGTGTCCTGAGGTGTCATCTGCATGTCTGGCCATGTCGAGAAGTTTCCTGCCTTGTTCGATATTACAAATTTAG

Coding sequence (CDS)

ATGGCTTATCAGCATGGTCCGGGTCCTAGTTCCATATCTGGATCAAGTTCGAGTTCTGGGTTCCTGAACTCTCCTTTTGGTGATACCACTTACACCAAGGTCTTTGTTGGTGGGTTGGCCTGGGAGACTCAGAGCGAAACTATGAGGCGCTACTTTGAGCAGTTTGGGAGATTCTTGAGGCTGTTAAGAGCTTGTGCAGACCCTACCCCAATTATTGATGGCAGGCGAGCAAATTGTAATCTAGCTTCACTTGGTCGGCCTCGTCCACCTATATCTTTTGGAACAGGACGTTTAAGACAGCCTGCAGTTTATGTTGGAGGCATGCAACCTAACAGGGGAACTTATATTGGAAATTTTGGCTATCAACAACCGGTTTCCTATGCTTATCAGCAGGGACTTGCATATCCTCCTTATGGTTATGCTACTTATGGACCTGAGTATGTCTACCCGCAGGGTGGATACAACCCTTTCGTGGGTCAGCAATACCTGCAGATTTATGGAGTGCCTGGGTCAGCAAGCCCTACAATTTATCATTATGGACAATTAGGTCAAACAGTCCCCGGTGGTCATGGTTATGGAGCAGTACATGGATACGCGATGCCAAGTCCTCAGATTTTGCAGTTTAGTGGTCCTAATGTTAATGCTTTAACATCTTCTCCAATGCCTACTATTCAGGCACCATATCCTTCAGGGATTCCAGCACCTGTTGCAGCACAGCCACAGTTCGTTGTTCATTCTCCTTCTCAGTTCGTACAAGGTAGCGGTTCTGACCAAACATCTGGTTACAGCTTCTCGTGTCCTGAGGTGTCATCTGCATGTCTGGCCATGTCGAGAAGTTTCCTGCCTTGTTCGATATTACAAATTTAG

Protein sequence

MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLLRACADPTPIIDGRRANCNLASLGRPRPPISFGTGRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSGYSFSCPEVSSACLAMSRSFLPCSILQI

Homology

[Close]

BLAST of IVF0023375 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.0e-14
Identity = 74/213 (34.74%), Postives = 92/213 (43.19%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL-------------- 76
           ++S  +N  FGDT  TKVFVGGLAW+T  E M  +F ++G  L  +              
Sbjct: 2   TTSNNVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYG 61

Query: 77  -----------RACADPTPIIDGRRANCNLASLGRPRPPISFGTGRLRQPAVYV----GG 136
                      RAC D TPII+GRRANCNLASLG          GRLR+         G 
Sbjct: 62  FVTFKDAKAATRACEDSTPIINGRRANCNLASLG----------GRLRKSPTMTSPQQGP 121

Query: 137 MQPNRGT--YIGNFG-YQQPVSYAYQQ-----GLAYPPYGYATYGPEYVYPQGGYNPFVG 184
              NR T  ++GN   +  P  +  QQ       A P YGY +    YV P   +N  VG
Sbjct: 122 KNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGYPS---AYVAPNMTFNQKVG 181

[Close]

BLAST of IVF0023375 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.8e-13
Identity = 65/217 (29.95%), Postives = 80/217 (36.87%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL------------------------- 87
           DTTYTK+FVGGL + T   ++R+YFE FG     +                         
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISFGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQIHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQL 207
            P  Y Y Q    P        P        Y  +    Y Q      +A+   Y Y   
Sbjct: 127 -PAHYVYPQAYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQYSAAAAAAAYDQYPYA-- 186

Query: 208 GQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 220
               P   GY    GY    PQ L  + P   A  ++
Sbjct: 187 --ASPAATGYVTAAGYGYAVPQPLTAAAPGSAAAAAA 209

[Close]

BLAST of IVF0023375 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.5e-12
Identity = 67/222 (30.18%), Postives = 84/222 (37.84%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL------------------------- 87
           DTTYTK+FVGGL + T   ++R+YFE FG     +                         
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISFGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 220
           Y Q      P   GY    GY     Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTAGGYGYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of IVF0023375 vs. ExPASy Swiss-Prot
Match: D3Z4I3 (RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.2e-12
Identity = 67/222 (30.18%), Postives = 85/222 (38.29%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL------------------------- 87
           DTTYTK+FVGGL + T   ++R+YFE FG     +                         
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 88  RACADPTPIIDGRRANCNLASLGRPRPPISFGTGRLRQPAVYVGGMQPNRGTYIGNFGYQ 147
           RAC DP PIIDGR+AN NLA LG           R+ QP    G  Q +       FG  
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLG--------AKPRIMQPGFAFGVQQLHPALIQRPFGI- 126

Query: 148 QPVSYAYQQGLAYP----PYGYATYGPEYVYPQGGYNPFVGQQYLQIYGVPGSASPTIYH 207
            P  Y Y Q    P    P+   T       P   Y  + G  Y Q Y    +A+     
Sbjct: 127 -PAHYVYPQAFVQPGVVIPHVQPTAAAASTTP---YIDYTGAAYAQ-YSAAAAAAAAAAA 186

Query: 208 YGQLGQTV-PGGHGYGAVHGYAMPSPQILQFSGPNVNALTSS 220
           Y Q      P   GY    GY+    Q +  + P   A  ++
Sbjct: 187 YDQYPYAASPAAAGYVTTGGYSYAVQQPITAAAPGTAAAAAA 214

[Close]

BLAST of IVF0023375 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 7.2e-12
Identity = 64/208 (30.77%), Postives = 81/208 (38.94%), Query Frame = 0


Query: 28  DTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL------------------------- 87
           DTTYTK+FVGGL + T   ++R+YFE FG     +                         
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 88  RACADPTPIIDGRRANCNLASLG-RPR---PPISFGTGRLRQPAVYVGGMQPNRGTYIGN 147
           RAC DP PIIDGR+AN NLA LG +PR   P  +FG      P ++   +Q   G     
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAKPRVMQPGFTFGV-----PQIHPAFIQRPYGI---- 126

Query: 148 FGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGG--YNPFVGQQYLQIYGVPGSASPTI 204
                P  Y Y Q    P        P          Y  + G  Y Q      +A+   
Sbjct: 127 -----PTHYVYPQAFMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAA 186

[Close]

BLAST of IVF0023375 vs. ExPASy TrEMBL
Match: A0A5D3CHF9 (RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold807G00070 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 1.0e-141
Identity = 256/286 (89.51%), Postives = 257/286 (89.86%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RACADPTPIIDGRRANCNLASLGRPRPPISFGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 262
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of IVF0023375 vs. ExPASy TrEMBL
Match: A0A1S3CME8 (RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1)

HSP 1 Score: 512.7 bits (1319), Expect = 1.0e-141
Identity = 256/286 (89.51%), Postives = 257/286 (89.86%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RACADPTPIIDGRRANCNLASLGRPRPPISFGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 262
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of IVF0023375 vs. ExPASy TrEMBL
Match: A0A0A0KHA9 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV=1)

HSP 1 Score: 493.8 bits (1270), Expect = 4.8e-136
Identity = 245/277 (88.45%), Postives = 248/277 (89.53%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 253
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQ 277

[Close]

BLAST of IVF0023375 vs. ExPASy TrEMBL
Match: A0A6J1G3W1 (RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1)

HSP 1 Score: 483.8 bits (1244), Expect = 5.0e-133
Identity = 243/286 (84.97%), Postives = 247/286 (86.36%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RAC DPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 262
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of IVF0023375 vs. ExPASy TrEMBL
Match: A0A6J1KGG8 (RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1)

HSP 1 Score: 481.1 bits (1237), Expect = 3.2e-132
Identity = 241/286 (84.27%), Postives = 245/286 (85.66%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RAC DPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 262
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of IVF0023375 vs. NCBI nr
Match: XP_008464801.1 (PREDICTED: RNA-binding protein 24-A [Cucumis melo])

HSP 1 Score: 510 bits (1313), Expect = 3.69e-181
Identity = 256/286 (89.51%), Postives = 257/286 (89.86%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RACADPTPIIDGRRANCNLASLGRPRPPISFGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 261
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of IVF0023375 vs. NCBI nr
Match: XP_004146763.1 (RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_003949 [Cucumis sativus])

HSP 1 Score: 508 bits (1308), Expect = 2.13e-180
Identity = 254/286 (88.81%), Postives = 257/286 (89.86%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RACADPTPIIDGRRANCNLASLGRPRPP+S+GT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPLSYGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 261
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of IVF0023375 vs. NCBI nr
Match: KAA0045404.1 (RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding protein 24-A [Cucumis melo var. makuwa])

HSP 1 Score: 510 bits (1313), Expect = 5.70e-179
Identity = 256/286 (89.51%), Postives = 257/286 (89.86%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RACADPTPIIDGRRANCNLASLGRPRPPISFGT
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACADPTPIIDGRRANCNLASLGRPRPPISFGT 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA
Sbjct: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 261
           LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 286

[Close]

BLAST of IVF0023375 vs. NCBI nr
Match: XP_022946505.1 (RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protein 24-A [Cucurbita moschata])

HSP 1 Score: 481 bits (1239), Expect = 6.46e-170
Identity = 243/286 (84.97%), Postives = 247/286 (86.36%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RAC DPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNTGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG YIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGYAMPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYAMPSPQIVQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 261
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of IVF0023375 vs. NCBI nr
Match: XP_022999744.1 (RNA-binding protein 24-A [Cucurbita maxima] >XP_022999745.1 RNA-binding protein 24-A [Cucurbita maxima])

HSP 1 Score: 479 bits (1232), Expect = 7.53e-169
Identity = 241/286 (84.27%), Postives = 245/286 (85.66%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQHG GPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFG  L 
Sbjct: 1   MAYQHGRGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RAC DPTPIIDGRRANCNLASLGRPRPPIS+  
Sbjct: 61  AVVITDKNSGRSKGYGFVTFRDPESARRACVDPTPIIDGRRANCNLASLGRPRPPISY-- 120

Query: 121 GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180
           GRLR PAVYVGGMQPNRG Y GNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN
Sbjct: 121 GRLRPPAVYVGGMQPNRGNYFGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYN 180

Query: 181 PFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNA 240
           PFVGQQYLQIYGVPGSASP IYHYGQLGQTVPGGHGYGAVHGY MPSPQI+QF GPNVN 
Sbjct: 181 PFVGQQYLQIYGVPGSASPAIYHYGQLGQTVPGGHGYGAVHGYTMPSPQIMQFGGPNVNP 240

Query: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 261
           LTSSPMPTIQAPYPSGIPAPVAAQPQF+VHSPSQFVQGS SDQTSG
Sbjct: 241 LTSSPMPTIQAPYPSGIPAPVAAQPQFIVHSPSQFVQGSSSDQTSG 284

[Close]

BLAST of IVF0023375 vs. TAIR 10
Match: AT1G76460.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 310.8 bits (795), Expect = 1.1e-84
Identity = 163/295 (55.25%), Postives = 198/295 (67.12%), Query Frame = 0


Query: 1   MAYQHGPGPSSISGSSSSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLR 60
           MAYQ  PG        S   +LNSPFGDTT+TKVFVGGLAWETQSET+R++FEQ+G  L 
Sbjct: 1   MAYQPVPG--------SGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILE 60

Query: 61  LL-------------------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT 120
            +                         RACADPTPIIDGRRANCNLASLGRPRPP+ +  
Sbjct: 61  AVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYAV 120

Query: 121 -----GRLRQPAVYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY- 180
                GRLR  + Y+G +Q  RG+ IGN+ YQQP+ Y YQQG+ Y PYG   YGPEY+Y 
Sbjct: 121 IPNMPGRLRPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVY-PYGVTAYGPEYMYS 180

Query: 181 -PQGGYNPFVGQQYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQF 240
             QG Y+P++GQQYLQ+YGVPG+ +  +Y YGQL QT+P GHGY AV GY++P   ILQ 
Sbjct: 181 QSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSHILQL 240

Query: 241 SGPNVNALTSSPMPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSGYS 264
            GP V+ +T+S MP +QAPYPSGIP P   Q   +VHSP QF+Q + SDQT+ YS
Sbjct: 241 GGPTVSTMTTSSMPALQAPYPSGIPGPAPVQSHIIVHSP-QFMQSTASDQTTSYS 285

[Close]

BLAST of IVF0023375 vs. TAIR 10
Match: AT1G20880.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-68
Identity = 144/281 (51.25%), Postives = 178/281 (63.35%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL---------- 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G  L  +          
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  ---------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT-----GRLRQPA 134
                          RAC DPTPIIDGRRANCNLASLGR RPP+ +       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 262
           M  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]

BLAST of IVF0023375 vs. TAIR 10
Match: AT1G20880.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-68
Identity = 144/281 (51.25%), Postives = 178/281 (63.35%), Query Frame = 0


Query: 15  SSSSSGF--LNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL---------- 74
           S  SSGF  LNSPFGDTT+TKVFVGGLAWETQSET+RR+F+Q+G  L  +          
Sbjct: 5   SIPSSGFHYLNSPFGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRS 64

Query: 75  ---------------RACADPTPIIDGRRANCNLASLGRPRPPISFGT-----GRLRQPA 134
                          RAC DPTPIIDGRRANCNLASLGR RPP+ +       GR+R P+
Sbjct: 65  KGYGFVTFRDPEAARRACVDPTPIIDGRRANCNLASLGRSRPPMQYAVIPHAPGRVRPPS 124

Query: 135 VYVGGMQPNRGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVY--PQGGYNPFVGQ 194
            YVG +Q  RG + G+  Y QP +Y YQQG+ Y PYG   YGP+Y+Y   QG Y P++GQ
Sbjct: 125 PYVGSVQSPRGLHFGSHPYHQPPTYNYQQGVVY-PYGVTPYGPDYMYSQSQGFYGPYMGQ 184

Query: 195 QYLQIYGVPGSASPTIYHYGQLGQTVPGGHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 254
           QYLQ+YGVPG+ +   Y YGQL  T+PG HGY A  GY+ P   +LQ          +SP
Sbjct: 185 QYLQVYGVPGAVNSPGYQYGQLSHTIPGAHGYTAGQGYSHPGSHVLQLG-------ATSP 244

Query: 255 MPTIQAPYPSGIPAPVAAQPQFVVHSPSQFVQGSGSDQTSG 262
           M  IQ+PYPS  P+    Q + +V +P Q++Q SGSDQT+G
Sbjct: 245 MSAIQSPYPS--PSAPTHQ-RVIVQTPPQYIQSSGSDQTTG 274

[Close]

BLAST of IVF0023375 vs. TAIR 10
Match: AT1G22330.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 132.1 bits (331), Expect = 7.1e-31
Identity = 103/278 (37.05%), Postives = 136/278 (48.92%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL-------------- 76
           S++ +  SPFGDTT+TKVFVGGLAWET ++ MRRYF+QFG  L  +              
Sbjct: 2   SNTSYYRSPFGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYG 61

Query: 77  -----------RACADPTPIIDGRRANCNLASLGRPRPPISFGTGRLRQPAVYVGGMQPN 136
                      RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y GG Q +
Sbjct: 62  FVTFRDSDSATRAVADPNPVIDGRKANCNIASFGRPRPSTPRGRGQGGSPSQYQGGGQSS 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGPEYVYPQGGYNPFVGQ-QYL--QIYGV 196
                   G   PV  A    L YP YGY TY  EY Y Q  YN  + Q QY   Q+YG 
Sbjct: 122 ------YTGMAAPVQQAAAAQLMYPSYGY-TYNSEYGYHQALYNAQLQQAQYYQQQMYGG 181

Query: 197 PGSASPTI-------YHYGQLGQTVPG-GHGYGAVHGYAMPSPQILQFSGPNVNALTSSP 256
            G+ SP+        Y+Y Q     P   H     + +     Q  Q   P+ ++    P
Sbjct: 182 GGATSPSSSNIMPSPYYYLQAPSPRPYLHHQQHYQYHHHQQQQQQQQQRLPSASSYLIYP 241

[Close]

BLAST of IVF0023375 vs. TAIR 10
Match: AT1G78260.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 126.7 bits (317), Expect = 3.0e-29
Identity = 100/252 (39.68%), Postives = 121/252 (48.02%), Query Frame = 0


Query: 17  SSSGFLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGRFLRLL-------------- 76
           S + +  SPFGDTTYTKVFVGGLAWET ++ MRRYFEQFG  L  +              
Sbjct: 2   SQTSYYRSPFGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYG 61

Query: 77  -----------RACADPTPIIDGRRANCNLASLGRPRPPISFGTGRLRQPAVYVGGMQPN 136
                      RA ADP P+IDGR+ANCN+AS GRPRP    G G+   P+ Y  G    
Sbjct: 62  FVTFRESDSATRAVADPNPVIDGRKANCNIASFGRPRPSPPRGRGQTGSPSQYQSG---G 121

Query: 137 RGTYIGNFGYQQPVSYAYQQGLAYPPYGYATYGP-EYVYPQGGYNPFVG-----QQYLQI 196
             TY    G   P+  A    L YP YGY TY P ++ Y Q  YN  +      QQ  Q+
Sbjct: 122 PSTYT---GMAAPLPPAAAPQLMYPSYGY-TYNPDQFGYHQALYNTQLQQAQYYQQQQQL 181

Query: 197 YG----VPGSASPTI----YHYGQLGQT--VPGGHGYGAVHGYAMPSPQILQFSGPN--V 226
           YG     P S+  TI    Y+YG   Q   VP  H +     Y        +FS P+  V
Sbjct: 182 YGGGATSPSSSGATIMPSPYYYGYSLQAPRVPYQHHHHLPQPYNPQQHHHQRFSSPSFLV 241

The following BLAST results are available for this feature:

BLAST of IVF0023375 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	2.0e-14	34.74	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	3.8e-13	29.95	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9BX46	2.5e-12	30.18	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
D3Z4I3	3.2e-12	30.18	RNA-binding protein 24 OS=Mus musculus OX=10090 GN=Rbm24 PE=1 SV=1	[more]
Q76LC6	7.2e-12	30.77	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]

BLAST of IVF0023375 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CHF9	1.0e-141	89.51	RNA-binding protein 24-A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CME8	1.0e-141	89.51	RNA-binding protein 24-A OS=Cucumis melo OX=3656 GN=LOC103502602 PE=4 SV=1	[more]
A0A0A0KHA9	4.8e-136	88.45	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G401470 PE=4 SV...	[more]
A0A6J1G3W1	5.0e-133	84.97	RNA-binding protein 24-A OS=Cucurbita moschata OX=3662 GN=LOC111450546 PE=4 SV=1	[more]
A0A6J1KGG8	3.2e-132	84.27	RNA-binding protein 24-A OS=Cucurbita maxima OX=3661 GN=LOC111494003 PE=4 SV=1	[more]

BLAST of IVF0023375 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464801.1	3.69e-181	89.51	PREDICTED: RNA-binding protein 24-A [Cucumis melo]	[more]
XP_004146763.1	2.13e-180	88.81	RNA-binding protein 24-A [Cucumis sativus] >KGN48031.2 hypothetical protein Csa_...	[more]
KAA0045404.1	5.70e-179	89.51	RNA-binding protein 24-A [Cucumis melo var. makuwa] >TYK11333.1 RNA-binding prot...	[more]
XP_022946505.1	6.46e-170	84.97	RNA-binding protein 24-A [Cucurbita moschata] >XP_022946506.1 RNA-binding protei...	[more]
XP_022999744.1	7.53e-169	84.27	RNA-binding protein 24-A [Cucurbita maxima] >XP_022999745.1 RNA-binding protein ...	[more]

BLAST of IVF0023375 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76460.1	1.1e-84	55.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.1	1.9e-68	51.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G20880.2	1.9e-68	51.25	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22330.1	7.1e-31	37.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G78260.2	3.0e-29	39.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 27..69 e-value: 4.1E-5 score: 25.6
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 63..258 coord: 1..59
None	No IPR available	PANTHER	PTHR11176:SF32	RNA-BINDING PROTEIN 38-LIKE ISOFORM X1	coord: 63..258 coord: 1..59
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 4..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023375.1	IVF0023375.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding