IVF0023347 (gene) Melon (IVF77) v1

Overview


Name	IVF0023347
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr04: 18150118 .. 18150563 (-)
RNA-Seq Expression	IVF0023347
Synteny	IVF0023347

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGAAATGCATTCACTGGTTCAACTGCCACAATCAATGTTCATCCAAACCAAACACAAACCCTGATTGATATGTCGAACTCCCTTGCTCCTCCTGCGACAGAATCAACAACCATAATTTCACCATTAACTAAAGGAAGAGAAAAAAAGGATAGTAATGATTATTTAAATCAATTAACCAAAAGCGATTGCCACCACTTTTGTTTGTCTCTGTCCCTGTTATTGAATTTTCACGAAGACTTTCTCGGAAAAGTTTGTTCCTCGGAGCTTCGAAACTGCTGAAAGAGTTGGAAAGGCAGAGGATGGTGATAAATAGGAAGAAGAAGAAATTGAAAGGAGCGAATCAATCTGACGTCCGTCGTCGGATTCGGTATGGAAGATGGAAAAATGGAGGAGCAGAAGTTGTATTTTCTGCCTTCCAACTCTTTAACCGGGACCGTTAA

mRNA sequence

ATGGGTCGAAATGCATTCACTGGTTCAACTGCCACAATCAATCGATTGCCACCACTTTTGTTTGTCTCTGTCCCTGTTATTGAATTTTCACGAAGACTTTCTCGGAAAAGTTTGTTCCTCGGAGCTTCGAAACTGCTGAAAGAGTTGGAAAGGCAGAGGATGGTGATAAATAGGAAGAAGAAGAAATTGAAAGGAGCGAATCAATCTGACGTCCGTCGTCGGATTCGGTATGGAAGATGGAAAAATGGAGGAGCAGAAGTTGTATTTTCTGCCTTCCAACTCTTTAACCGGGACCGTTAA

Coding sequence (CDS)

ATGGGTCGAAATGCATTCACTGGTTCAACTGCCACAATCAATCGATTGCCACCACTTTTGTTTGTCTCTGTCCCTGTTATTGAATTTTCACGAAGACTTTCTCGGAAAAGTTTGTTCCTCGGAGCTTCGAAACTGCTGAAAGAGTTGGAAAGGCAGAGGATGGTGATAAATAGGAAGAAGAAGAAATTGAAAGGAGCGAATCAATCTGACGTCCGTCGTCGGATTCGGTATGGAAGATGGAAAAATGGAGGAGCAGAAGTTGTATTTTCTGCCTTCCAACTCTTTAACCGGGACCGTTAA

Protein sequence

MGRNAFTGSTATINRLPPLLFVSVPVIEFSRRLSRKSLFLGASKLLKELERQRMVINRKKKKLKGANQSDVRRRIRYGRWKNGGAEVVFSAFQLFNRDR

Homology

[Close]

BLAST of IVF0023347 vs. ExPASy TrEMBL
Match: A0A0A0L8Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642660 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 4.2e-31
Identity = 81/99 (81.82%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1   MGRNAFTGSTATINRLPPLLFVSVPVIEFSRRLSRKSLFLGASKLLKELERQRMVINRKK 60
           MGRNAFTG TATINRLPPLLFVSVPV+ F     RKSLFLGASKLLKELERQRMVI RKK
Sbjct: 1   MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDF-RKSLFLGASKLLKELERQRMVIKRKK 60

Query: 61  KKLKGANQSDVRRRIRYGRWKNGGAEVVFSAFQLFNRDR 100
           K LKGANQSDVRRRIRYGRW+NGGAEV      L NRDR
Sbjct: 61  KNLKGANQSDVRRRIRYGRWENGGAEV----RDLSNRDR 94

[Close]

BLAST of IVF0023347 vs. NCBI nr
Match: KGN58425.1 (hypothetical protein Csa_000713 [Cucumis sativus])

HSP 1 Score: 144 bits (363), Expect = 1.50e-42
Identity = 81/99 (81.82%), Postives = 83/99 (83.84%), Query Frame = 0


Query: 1  MGRNAFTGSTATINRLPPLLFVSVPVIEFSRRLSRKSLFLGASKLLKELERQRMVINRKK 60
          MGRNAFTG TATINRLPPLLFVSVPV+ F     RKSLFLGASKLLKELERQRMVI RKK
Sbjct: 1  MGRNAFTGPTATINRLPPLLFVSVPVLNFHEDF-RKSLFLGASKLLKELERQRMVIKRKK 60

Query: 61 KKLKGANQSDVRRRIRYGRWKNGGAEVVFSAFQLFNRDR 99
          K LKGANQSDVRRRIRYGRW+NGGAEV      L NRDR
Sbjct: 61 KNLKGANQSDVRRRIRYGRWENGGAEVR----DLSNRDR 94

The following BLAST results are available for this feature:

BLAST of IVF0023347 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023347 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8Z8	4.2e-31	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G642660 PE=4 SV=1	[more]

BLAST of IVF0023347 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58425.1	1.50e-42	81.82	hypothetical protein Csa_000713 [Cucumis sativus]	[more]

BLAST of IVF0023347 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 42..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023347.1	IVF0023347.1	mRNA