IVF0023276 (gene) Melon (IVF77) v1

Overview


Name	IVF0023276
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Cell division protein ftsH
Location	chr05: 7269327 .. 7269658 (+)
RNA-Seq Expression	IVF0023276
Synteny	IVF0023276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGTAGAAGTGAACGATGCTTAGGATCGAGGTTGAAAAATATTAAATCAAACAAGGATGATCCTATTCTGATCGATGATAATACAGAGGTATATTTCTAACTTTCTGAATTTGAATTTTAAATGGTAGAAATAGTTAAAAAAAAATATAATATGTGTATATATGGTAGGAGGATGTAAAAAATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCCAGAAGATGATGAAGAAGAGTTAAGAGGACCTACAGGTACACAGATTGTTGTGTACCAGGATCAGAAGTTTTTGAAAAAGAATGTGGTGTTTGAAACACCATAA

mRNA sequence

ATGGTTCGTAGAAGTGAACGATGCTTAGGATCGAGGTTGAAAAATATTAAATCAAACAAGGATGATCCTATTCTGATCGATGATAATACAGAGGAGGATGTAAAAAATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCCAGAAGATGATGAAGAAGAGTTAAGAGGACCTACAGGTACACAGATTGTTGTGTACCAGGATCAGAAGTTTTTGAAAAAGAATGTGGTGTTTGAAACACCATAA

Coding sequence (CDS)

ATGGTTCGTAGAAGTGAACGATGCTTAGGATCGAGGTTGAAAAATATTAAATCAAACAAGGATGATCCTATTCTGATCGATGATAATACAGAGGAGGATGTAAAAAATGAAGAACCAATCCAATACGAACCACTACAAACTATATATCCAGAAGATGATGAAGAAGAGTTAAGAGGACCTACAGGTACACAGATTGTTGTGTACCAGGATCAGAAGTTTTTGAAAAAGAATGTGGTGTTTGAAACACCATAA

Protein sequence

MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGPTGTQIVVYQDQKFLKKNVVFETP

Homology

[Close]

BLAST of IVF0023276 vs. ExPASy TrEMBL
Match: A0A5A7TIM3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00690 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.8e-28
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGP 60
          MVRRSERCLG +LK IKSNKDDPI+I DNTEE+V+ EEPIQYEPLQTIY +DDE+ELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQIVVYQDQKFLKKNVVFETP 84
          T T IVVYQ+QKF+K NVVFETP
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETP 83

[Close]

BLAST of IVF0023276 vs. ExPASy TrEMBL
Match: A0A5D3E3X1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00070 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 3.1e-27
Identity = 60/83 (72.29%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGP 60
          MVRRSERCLGSRLK IKS+KD+ ILI+DN EED++NEEP+ Y+P+Q IYP+DDEEEL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQIVVYQDQKFLKKNVVFETP 84
          TGTQIVVY D+KF++ ++VF+TP
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTP 83

[Close]

BLAST of IVF0023276 vs. ExPASy TrEMBL
Match: A0A5A7VKG5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00090 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.0e-14
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGP 60
          MVR+S RCLGSR+K++KSNKDDPI+I+D              E   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TGTQIVVYQDQKFLKKNVVFETP 84
          T TQI++Y+++K++K +VVFETP
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETP 70

[Close]

BLAST of IVF0023276 vs. ExPASy TrEMBL
Match: A0A1S3CM64 (uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103502558 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 4.1e-11
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  SRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGPTGT 64
           ++LK IKS+KD+ ILI+DN EED++NEEP+ Y+P+QTIYP+DDEEEL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

[Close]

BLAST of IVF0023276 vs. ExPASy TrEMBL
Match: A0A5A7SWP5 (Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003940 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 9.0e-11
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 28 DNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGPTGTQIVVYQDQKFLKKNVVFETP 84
          D+ E++ + EE I YEPLQ +YP D E ELRGPTGTQIV+Y+++K++K +VVFETP
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETP 58

[Close]

BLAST of IVF0023276 vs. NCBI nr
Match: KAA0043162.1 (uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK12303.1 uncharacterized protein E5676_scaffold302G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 133 bits (335), Expect = 3.38e-38
Identity = 67/83 (80.72%), Postives = 75/83 (90.36%), Query Frame = 0


Query: 1  MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGP 60
          MVRRSERCLG +LK IKSNKDDPI+I DNTEE+V+ EEPIQYEPLQTIY +DDE+ELRGP
Sbjct: 1  MVRRSERCLGLQLKIIKSNKDDPIVIKDNTEEEVRYEEPIQYEPLQTIYLDDDEQELRGP 60

Query: 61 TGTQIVVYQDQKFLKKNVVFETP 83
          T T IVVYQ+QKF+K NVVFETP
Sbjct: 61 TDTLIVVYQNQKFVKTNVVFETP 83

[Close]

BLAST of IVF0023276 vs. NCBI nr
Match: TYK30586.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 130 bits (328), Expect = 6.90e-35
Identity = 60/83 (72.29%), Postives = 76/83 (91.57%), Query Frame = 0


Query: 1  MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGP 60
          MVRRSERCLGSRLK IKS+KD+ ILI+DN EED++NEEP+ Y+P+Q IYP+DDEEEL+GP
Sbjct: 1  MVRRSERCLGSRLKKIKSSKDNSILIEDNVEEDIRNEEPLDYQPIQIIYPKDDEEELQGP 60

Query: 61 TGTQIVVYQDQKFLKKNVVFETP 83
          TGTQIVVY D+KF++ ++VF+TP
Sbjct: 61 TGTQIVVYDDKKFMRTDMVFKTP 83

[Close]

BLAST of IVF0023276 vs. NCBI nr
Match: KAA0066916.1 (Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 86.7 bits (213), Expect = 1.95e-19
Identity = 45/83 (54.22%), Postives = 60/83 (72.29%), Query Frame = 0


Query: 1  MVRRSERCLGSRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGP 60
          MVR+S RCLGSR+K++KSNKDDPI+I+D              E   T+Y  DDE ELRGP
Sbjct: 1  MVRKSGRCLGSRMKHMKSNKDDPIMINDT-------------EVCGTVYKGDDEYELRGP 60

Query: 61 TGTQIVVYQDQKFLKKNVVFETP 83
          T TQI++Y+++K++K +VVFETP
Sbjct: 61 TCTQIMLYEEKKYVKPDVVFETP 70

[Close]

BLAST of IVF0023276 vs. NCBI nr
Match: XP_008464749.1 (PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 6.40e-16
Identity = 35/53 (66.04%), Postives = 47/53 (88.68%), Query Frame = 0


Query: 11  SRLKNIKSNKDDPILIDDNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGPTGT 63
           ++LK IKS+KD+ ILI+DN EED++NEEP+ Y+P+QTIYP+DDEEEL+G T T
Sbjct: 108 NKLKKIKSSKDNSILIEDNEEEDIRNEEPLDYQPIQTIYPKDDEEELQGTTDT 160

[Close]

BLAST of IVF0023276 vs. NCBI nr
Match: KAA0035692.1 (Cell division protein ftsH [Cucumis melo var. makuwa])

HSP 1 Score: 77.0 bits (188), Expect = 3.02e-15
Identity = 34/56 (60.71%), Postives = 46/56 (82.14%), Query Frame = 0


Query: 28 DNTEEDVKNEEPIQYEPLQTIYPEDDEEELRGPTGTQIVVYQDQKFLKKNVVFETP 83
          D+ E++ + EE I YEPLQ +YP D E ELRGPTGTQIV+Y+++K++K +VVFETP
Sbjct: 3  DDIEDEERYEEAINYEPLQAVYPNDGEHELRGPTGTQIVLYEEKKYVKPDVVFETP 58

The following BLAST results are available for this feature:

BLAST of IVF0023276 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIM3	4.8e-28	80.72	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3E3X1	3.1e-27	72.29	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold974G00...	[more]
A0A5A7VKG5	3.0e-14	54.22	Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CM64	4.1e-11	66.04	uncharacterized protein LOC103502558 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5A7SWP5	9.0e-11	60.71	Cell division protein ftsH OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]

BLAST of IVF0023276 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043162.1	3.38e-38	80.72	uncharacterized protein E6C27_scaffold110G00260 [Cucumis melo var. makuwa] >TYK1...	[more]
TYK30586.1	6.90e-35	72.29	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0066916.1	1.95e-19	54.22	Cell division protein ftsH [Cucumis melo var. makuwa] >TYK30198.1 Cell division ...	[more]
XP_008464749.1	6.40e-16	66.04	PREDICTED: uncharacterized protein LOC103502558 isoform X2 [Cucumis melo]	[more]
KAA0035692.1	3.02e-15	60.71	Cell division protein ftsH [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023276 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023276.1	IVF0023276.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051301	cell division