IVF0023244 (gene) Melon (IVF77) v1

Overview


Name	IVF0023244
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein ROOT HAIR DEFECTIVE 3 homolog
Location	chr06: 8161572 .. 8162634 (-)
RNA-Seq Expression	IVF0023244
Synteny	IVF0023244

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATTGAGCCTTGTACACTTGTGATGGATTTAGAAGGAACTGGTGGAAGAGAGCGAGGAGAGGTGCACTTCTATGCCCTTTTTGGTTTTCATGTGTTTCTTTTGTTTGTACTTTCGTTTATTTTTACCTTTTTTTTATTTATTTATTTTTTATTTTTCCACAAATGTGTTTGTCAATGTTTTGAATTCAGTATATCATTGCATGCTTCTTTTTGCAGATACACGTATGTGTATGTATATCTGTATGTGTGTGTATGTAAGGATGTGTGTGTGTGTGTATGTATGTCTGTTTGTTGATATTAGGTTTTGTCACGTATGTGTGTGTATGTAAGGATATGTTTATGTTCGCATACATATGTATCTTAGCTTTATTGTTTCCACATTGTCTTGTTTAAGAAGTTGTTATAATTTAATTTAGGTGGTGTCACGATATTGGCCGTGAGCAGGCTGCAAATAAGTCTCTCCTCAAAACTGTATTCAGGTATTCCCTTTAATCTGGTTGGGGGTCATGGTGTATCTTTTATAGTATTAATTTAATAAATTTTAGTTGTTGTTGTATGCAGGTCATGATGAGATTGTTCAGTCCACATAAAACAACACTAATGTTTGTCATACGTGATAAAACAAGGGTCTGTTAATATTTCCTAGGTAGTTTATATCTTGAGTTGTTGTAGAAAAACCATATGTTGCAAGCTTTTAATTTTCTAATTTTCTTTATTGCTTTTGTTATTTATTTATTTATTTATTTTGTATGTAGATGCCATTGGAAAATTTAGAGCCTGTTATTAGAGGATGTACATAAGGTAAATTATTGGTGCTCTTAAATATTGTAATGCATAGAAAGTGCTATTTTGTTCTTATTTTGCTTTCTCCTCTCTAGTTACCTTTACACTATGTTGTTTTGTTGAATGTATGAGTAACTCTTTGCTAAGGGAGGGAGATGCTTCTGTGGTTCAGTTTATTATTTGACAAAAAAAAATACATATTTGTTTCTATAATTCTTTTGTAA

mRNA sequence

ATGTCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATTGAGCCTTGTACACTTGTGATGGATTTAGAAGGAACTGGTGGAAGAGAGCGAGGAGAGGTTTTATTATTTGACAAAAAAAAATACATATTTGTTTCTATAATTCTTTTGTAA

Coding sequence (CDS)

ATGTCACTTTCTAGATCGCAAACAACTAAAGGTATATGGTTGGCTAGATGCACCGGCATTGAGCCTTGTACACTTGTGATGGATTTAGAAGGAACTGGTGGAAGAGAGCGAGGAGAGGTTTTATTATTTGACAAAAAAAAATACATATTTGTTTCTATAATTCTTTTGTAA

Protein sequence

MSLSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEVLLFDKKKYIFVSIILL

Homology

[Close]

BLAST of IVF0023244 vs. ExPASy Swiss-Prot
Match: Q9SSN0 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g72960 PE=2 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 1.3e-13
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII 55
           RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F   I
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]

BLAST of IVF0023244 vs. ExPASy Swiss-Prot
Match: P93042 (Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.8e-13
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           RSQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE    F+K+  +F
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALF 117

[Close]

BLAST of IVF0023244 vs. ExPASy Swiss-Prot
Match: Q2QMH2 (Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os12g0604600 PE=2 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 6.3e-13
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII 55
           RSQTTKGIW+ARC G+EPCT+VMDLEGT GRERGE    F+K+  +F   I
Sbjct: 74  RSQTTKGIWIARCVGVEPCTVVMDLEGTDGRERGEDDTAFEKQSSLFALAI 124

[Close]

BLAST of IVF0023244 vs. ExPASy Swiss-Prot
Match: Q9FKE9 (Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g45160 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 2.0e-11
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           RSQTTKGIW+ARC GIEP T+ MDLEGT GRERGE    F+K+  +F
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALF 120

[Close]

BLAST of IVF0023244 vs. ExPASy Swiss-Prot
Match: Q0JLS6 (Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 PE=2 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-11
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           RSQTTKGIW+A+   IEPCTLVMDLEGT GRERGE    F+K+  +F
Sbjct: 71  RSQTTKGIWMAKAHNIEPCTLVMDLEGTDGRERGEDDTAFEKQSALF 117

[Close]

BLAST of IVF0023244 vs. ExPASy TrEMBL
Match: A0A7J7C125 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Tripterygium wilfordii OX=458696 GN=HS088_TW22G01557 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 7.2e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           + RSQTTKGIWLARCTGIEPCTLVMDLEGT GRERGE    F+K+  +F
Sbjct: 71  IGRSQTTKGIWLARCTGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALF 119

[Close]

BLAST of IVF0023244 vs. ExPASy TrEMBL
Match: A0A371EHB8 (Protein ROOT HAIR DEFECTIVE 3-like 1 (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_55960 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 9.4e-12
Identity = 36/50 (72.00%), Postives = 42/50 (84.00%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV--LLFDKKKYIF 51
           L+RSQTTKGIW+A+C GIEPCTLVMDLEGT GRERGEV    F+K+  +F
Sbjct: 89  LARSQTTKGIWMAKCVGIEPCTLVMDLEGTDGRERGEVDDTAFEKQSALF 138

[Close]

BLAST of IVF0023244 vs. ExPASy TrEMBL
Match: A0A103YNE3 (Root hair defective 3 GTP-binding OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_009266 PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.1e-11
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           L RSQTTKGIW+ARCTGIEPCT+VMDLEGT GRERGE    F+K+  +F
Sbjct: 81  LLRSQTTKGIWMARCTGIEPCTIVMDLEGTDGRERGEDDTAFEKQSALF 129

[Close]

BLAST of IVF0023244 vs. ExPASy TrEMBL
Match: A0A6J1KMA1 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494586 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           + RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F
Sbjct: 72  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALF 120

[Close]

BLAST of IVF0023244 vs. ExPASy TrEMBL
Match: A0A6J1KDB3 (Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC111494586 PE=3 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-11
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           + RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F
Sbjct: 73  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALF 121

[Close]

BLAST of IVF0023244 vs. NCBI nr
Match: KAG7025862.1 (Protein ROOT HAIR DEFECTIVE 3-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 1.98e-15
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE 39
           + RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE
Sbjct: 72  IGRSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGE 108

[Close]

BLAST of IVF0023244 vs. NCBI nr
Match: KAF2301062.1 (hypothetical protein GH714_019756 [Hevea brasiliensis])

HSP 1 Score: 75.1 bits (183), Expect = 3.07e-15
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV-LLFDKKKYIF 50
           RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F
Sbjct: 100 RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALF 146

[Close]

BLAST of IVF0023244 vs. NCBI nr
Match: MCI27040.1 (ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium])

HSP 1 Score: 72.0 bits (175), Expect = 3.26e-15
Identity = 31/35 (88.57%), Postives = 33/35 (94.29%), Query Frame = 0


Query: 5  RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE 39
          RSQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE
Sbjct: 10 RSQTTKGIWMARCAGIEPCTIVMDLEGTDGRERGE 44

[Close]

BLAST of IVF0023244 vs. NCBI nr
Match: RWW53041.1 (hypothetical protein BHE74_00040500 [Ensete ventricosum])

HSP 1 Score: 73.9 bits (180), Expect = 3.52e-15
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 3   LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV 40
           + RSQTTKGIWLA+C GIEPCT+VMDLEGT GRERGEV
Sbjct: 70  MGRSQTTKGIWLAKCAGIEPCTIVMDLEGTDGRERGEV 107

[Close]

BLAST of IVF0023244 vs. NCBI nr
Match: RRT35265.1 (hypothetical protein B296_00055797 [Ensete ventricosum])

HSP 1 Score: 72.0 bits (175), Expect = 3.89e-15
Identity = 32/38 (84.21%), Postives = 34/38 (89.47%), Query Frame = 0


Query: 3  LSRSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGEV 40
          + RSQTTKGIWLA C GIEPCT+VMDLEGT GRERGEV
Sbjct: 5  MGRSQTTKGIWLAVCAGIEPCTIVMDLEGTDGRERGEV 42

[Close]

BLAST of IVF0023244 vs. TAIR 10
Match: AT1G72960.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 76.3 bits (186), Expect = 9.0e-15
Identity = 37/51 (72.55%), Postives = 40/51 (78.43%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIFVSII 55
           RSQTTKGIWLARC GIEPCTLVMDLEGT GRERGE    F+K+  +F   I
Sbjct: 76  RSQTTKGIWLARCAGIEPCTLVMDLEGTDGRERGEDDTAFEKQSALFALAI 126

[Close]

BLAST of IVF0023244 vs. TAIR 10
Match: AT3G13870.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 74.3 bits (181), Expect = 3.4e-14
Identity = 34/47 (72.34%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           RSQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE    F+K+  +F
Sbjct: 71  RSQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALF 117

[Close]

BLAST of IVF0023244 vs. TAIR 10
Match: AT3G13870.2 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 72.4 bits (176), Expect = 1.3e-13
Identity = 33/46 (71.74%), Postives = 38/46 (82.61%), Query Frame = 0


Query: 6  SQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
          SQTTKGIW+ARC GIEPCT+VMDLEGT GRERGE    F+K+  +F
Sbjct: 8  SQTTKGIWIARCAGIEPCTVVMDLEGTDGRERGEDDTAFEKQSALF 53

[Close]

BLAST of IVF0023244 vs. TAIR 10
Match: AT5G45160.1 (Root hair defective 3 GTP-binding protein (RHD3) )

HSP 1 Score: 68.9 bits (167), Expect = 1.4e-12
Identity = 32/47 (68.09%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 5   RSQTTKGIWLARCTGIEPCTLVMDLEGTGGRERGE-VLLFDKKKYIF 51
           RSQTTKGIW+ARC GIEP T+ MDLEGT GRERGE    F+K+  +F
Sbjct: 74  RSQTTKGIWMARCVGIEPFTIAMDLEGTDGRERGEDDTTFEKQSALF 120

The following BLAST results are available for this feature:

BLAST of IVF0023244 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SSN0	1.3e-13	72.55	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Arabidopsis thaliana OX=3702 GN=At1g7...	[more]
P93042	4.8e-13	72.34	Protein ROOT HAIR DEFECTIVE 3 OS=Arabidopsis thaliana OX=3702 GN=RHD3 PE=1 SV=1	[more]
Q2QMH2	6.3e-13	66.67	Protein ROOT HAIR DEFECTIVE 3 homolog 1 OS=Oryza sativa subsp. japonica OX=39947...	[more]
Q9FKE9	2.0e-11	68.09	Protein ROOT HAIR DEFECTIVE 3 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At5g4...	[more]
Q0JLS6	4.5e-11	68.09	Protein ROOT HAIR DEFECTIVE 3 OS=Oryza sativa subsp. japonica OX=39947 GN=RHD3 P...	[more]

BLAST of IVF0023244 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J7C125	7.2e-12	75.51	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Tripterygium wilfordii OX=458696 GN=HS0...	[more]
A0A371EHB8	9.4e-12	72.00	Protein ROOT HAIR DEFECTIVE 3-like 1 (Fragment) OS=Mucuna pruriens OX=157652 GN=...	[more]
A0A103YNE3	2.1e-11	73.47	Root hair defective 3 GTP-binding OS=Cynara cardunculus var. scolymus OX=59895 G...	[more]
A0A6J1KMA1	2.7e-11	73.47	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149458...	[more]
A0A6J1KDB3	2.7e-11	73.47	Protein ROOT HAIR DEFECTIVE 3 homolog OS=Cucurbita maxima OX=3661 GN=LOC11149458...	[more]

BLAST of IVF0023244 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025862.1	1.98e-15	89.19	Protein ROOT HAIR DEFECTIVE 3-like 1, partial [Cucurbita argyrosperma subsp. arg...	[more]
KAF2301062.1	3.07e-15	76.60	hypothetical protein GH714_019756 [Hevea brasiliensis]	[more]
MCI27040.1	3.26e-15	88.57	ROOT HAIR defective 3 GTP-binding family protein [Trifolium medium]	[more]
RWW53041.1	3.52e-15	84.21	hypothetical protein BHE74_00040500 [Ensete ventricosum]	[more]
RRT35265.1	3.89e-15	84.21	hypothetical protein B296_00055797 [Ensete ventricosum]	[more]

BLAST of IVF0023244 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G72960.1	9.0e-15	72.55	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.1	3.4e-14	72.34	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT3G13870.2	1.3e-13	71.74	Root hair defective 3 GTP-binding protein (RHD3)	[more]
AT5G45160.1	1.4e-12	68.09	Root hair defective 3 GTP-binding protein (RHD3)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008803	RHD3/Sey1	PFAM	PF05879	RHD3	coord: 4..50 e-value: 2.7E-18 score: 65.5
IPR008803	RHD3/Sey1	PANTHER	PTHR45923	PROTEIN SEY1	coord: 4..50
None	No IPR available	PANTHER	PTHR45923:SF15	PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG	coord: 4..50
IPR030386	GB1/RHD3-type guanine nucleotide-binding (G) domain	PROSITE	PS51715	G_GB1_RHD3	coord: 1..56 score: 18.780735

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023244.1	IVF0023244.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005525	GTP binding