IVF0023227 (gene) Melon (IVF77) v1

Overview


Name	IVF0023227
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Gag/pol protein
Location	chr04: 21010459 .. 21012371 (-)
RNA-Seq Expression	IVF0023227
Synteny	IVF0023227

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGGTGAATGGGAGAAGTAGTTCATAGTAAGTGGGTGAGGGATATATGACAATACATCCTACAGTCTCTCCCATTGGGTCGCACCGTGAGATTCCTATAATGTGTCTGCTTGTCTACCTTGGAGCGACGTTCCCTTCGGAGGGCTGTATTATAGGATTTAGAACACCGCGAACTCCATATTTTGGATAGGGTCTCTTAGATAAGTTTTTATATTGTCTTTCCACTTTCGAGTGCATAATGAGAACCGAAAAATGAAGGAGTACACTTACAAAAATTACTAAAATAGTTAGTATATTCTTGACTGAAGTAAATGGTAACTAAATGCTAAGAAAATATAAGATATTTGTGAGTTAGCATTTGGTCAAAATTGTCTTGATTCAAAGGACGAGTAATCGGCTACCCCTTGGTAGAGGTTATTCTGAACCTTTGAATTATCGTTGCAAAAGATAACAAAGGGTATATTATTTAAAGTTTTGCTAAAAATATTGGTTTATTTAGATTATAGTTTCTAAACAAAGTATGCTTGTTTTTCAGCATGAATAGCTCGATAGTTCAATTGTTAGCTTCCGAAAAACTTAACGGCGATAACTATGCGGCATGGAAATCAAATCTTAACACAATACTAGTGGTTGATGATTTAAGATTTGTCTTAACTGAGGAATGTCCTCAAACCCCTGCCTCAAATGCAAACCGAACTAGTCGGAAAGCATATGATCGATGGATAAAAGCAAATGAAAAAGTTTGTGTCTACATCCTTGCTAGCATGTCGGATGTTTTAGCAAAGAAACATGAATCCTTAGCCATAGCTAAAGAGATATAGATTCATTAAAAAGAATGTCTGGGCAACCATAATGGTCCCTAAGACACGAGGCAATAAAATACATTTTCTCATGAGTTTTGAATTGCTAATGTTTTGTGAAATGTCTGCAATAGTAACGCAATTCATGTATGTTCATGTTATGATGTTCACTAAATGACAAATTTGATCGTGTACGATTTATTATGTTAGATACTGAGGCTTTTATGTTGCTCGTTTTATTAAATTGTGTATGTATATACGTTAGAATGACAAGTTCTTCAAAAGCACCCAAACACGTTTTGGACTAAAGAGGAAGAAGTGAAACTAGTGGAGTGTTTGGTGGAGTTGGTTTCATCTGGTAGGTGGAGATCAAATAATAGGTCCTTTCGACCTGAGCGTACTTGGCACAACTACAAAGATGACGACAGAGAAGTTGTCAGACACTAATATCCAAGGATCGCCGACTATCGATTGTCGGGTCAAATCCCTGAAAAAACATACCAAGCAATTGTAGAAATAAGAGGGCCATCATGTAGTGGCTTCGGATGGAATGAAGAATATCAGTGCATCATCGTAGAACGAGAGTTGTTCGGTAGTTGGGTGAAAGTATGTATTTTATGTAAAATGTTCTACGTTTATAATCCTAATCTTCGACTAATCTATTGAAATGTTTGCACAGAGTCATCCTGCAATCAAAGGCTTCCTAAACAAATAGTTTCCATATTATGATGATTTGTCCTATATGTTTGCCAAAGATTAGGCTACGAGAGTACGTTTAGAGACCTTTGCTAATGTAGGGTCTAATGTGCCAAACAATTTCAATGGTCTTCCTCTTGATGATTCACATGATCTGAAGATCCTGAGGATGTATAGTCTTGGAGTGGATATGTCACTAGATGAGACGTTGGAAACATGGAAAGGTCGATCAAGTGAAGGAAGAAATGCTTCGAGTGGAAGCAAGAGGAAACAAAGTGGCCAAGTGTCTAAAACGGTAGAGGTCATTAGGAATACAATAGAACCTGTGAATGACCAGTTTAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGAAACAGAGGACGAACTGTGTGGAGAAGTCGTGAAATAG

mRNA sequence

ATGAAGAAGGCTACGAGAGTACGTTTAGAGACCTTTGCTAATGTAGGGTCTAATGTGCCAAACAATTTCAATGGTCTTCCTCTTGATGATTCACATGATCTGAAGATCCTGAGGATGTATAGTCTTGGAGTGGATATGTCACTAGATGAGACGTTGGAAACATGGAAAGGTCGATCAAGTGAAGGAAGAAATGCTTCGAGTGGAAGCAAGAGGAAACAAAGTGGCCAAGTGTCTAAAACGGTAGAGGTCATTAGGAATACAATAGAACCTGTGAATGACCAGTTTAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGAAACAGAGGACGAACTGTGTGGAGAAGTCGTGAAATAG

Coding sequence (CDS)

ATGAAGAAGGCTACGAGAGTACGTTTAGAGACCTTTGCTAATGTAGGGTCTAATGTGCCAAACAATTTCAATGGTCTTCCTCTTGATGATTCACATGATCTGAAGATCCTGAGGATGTATAGTCTTGGAGTGGATATGTCACTAGATGAGACGTTGGAAACATGGAAAGGTCGATCAAGTGAAGGAAGAAATGCTTCGAGTGGAAGCAAGAGGAAACAAAGTGGCCAAGTGTCTAAAACGGTAGAGGTCATTAGGAATACAATAGAACCTGTGAATGACCAGTTTAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGAAACAGAGGACGAACTGTGTGGAGAAGTCGTGAAATAG

Protein sequence

MKKATRVRLETFANVGSNVPNNFNGLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSEGRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK

Homology

[Close]

BLAST of IVF0023227 vs. ExPASy TrEMBL
Match: A0A5D3DX03 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G00360 PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 6.3e-58
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   KKATRVRLETFANVGSNVPNNFNGLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 61
           +KATRVRLETFANVGSNVPNNFNGLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE
Sbjct: 67  EKATRVRLETFANVGSNVPNNFNGLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 126

Query: 62  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 119
           GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK
Sbjct: 127 GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 183

[Close]

BLAST of IVF0023227 vs. ExPASy TrEMBL
Match: A0A5A7UIQ1 (Subtilisin-like protease SBT3.17 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold406G00160 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.0e-36
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 39  MYSLGVDMSLDETLETWKGRSSEGRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAI 98
           MYSLGVDMSLDETLETWKGRSSEGRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAI
Sbjct: 1   MYSLGVDMSLDETLETWKGRSSEGRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAI 60

Query: 99  ADWPKEKCETEDELCGEVVK 119
           ADWPKEKCETEDELCGEVVK
Sbjct: 61  ADWPKEKCETEDELCGEVVK 80

[Close]

BLAST of IVF0023227 vs. ExPASy TrEMBL
Match: A0A5A7SQU2 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold472G00070 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.2e-26
Identity = 73/117 (62.39%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 3   KATRVRLETFANVGSNVPNNFNG-LPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 62
           +ATR R ETFA+VGSNVPN FNG +PLDDSHD  I  MYS GV MS DE      G++SE
Sbjct: 333 RATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASE 392

Query: 63  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 119
            +N SSGSKRKQ  +  +TVEVI++ IE  NDQ KAIA+WPKEK  TE EL  EV+K
Sbjct: 393 RKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMK 449

[Close]

BLAST of IVF0023227 vs. ExPASy TrEMBL
Match: A0A5A7USN6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00100 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 4.6e-24
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 3   KATRVRLETFANVGSNVPNNFN-GLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 62
           +AT+ R ETF+ VGSNVPN FN G+PL DSH+  I  MYS GV MS+DE      G++SE
Sbjct: 195 RATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASE 254

Query: 63  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 119
            RN SSGSKRK+  +  + VEVIR+ ++  N+Q K IADWPK+K  TE ELC EVVK
Sbjct: 255 RRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK 311

[Close]

BLAST of IVF0023227 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.3e-22
Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 3   KATRVRLETFANVGSNVPNNFN-GLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 62
           +AT  R ETFA+VGSN+PN FN G+PL DSH   I  MYS GV MSLDE   T  G++SE
Sbjct: 39  QATEARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASE 98

Query: 63  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 119
            RN SS SKRKQ  Q  +TVEVIR+ ++  NDQ KAIADW KEK   + EL   VVK
Sbjct: 99  RRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVK 155

[Close]

BLAST of IVF0023227 vs. NCBI nr
Match: TYK27770.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (587), Expect = 4.15e-75
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 2   KKATRVRLETFANVGSNVPNNFNGLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 61
           +KATRVRLETFANVGSNVPNNFNGLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE
Sbjct: 67  EKATRVRLETFANVGSNVPNNFNGLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 126

Query: 62  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 118
           GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK
Sbjct: 127 GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 183

[Close]

BLAST of IVF0023227 vs. NCBI nr
Match: KAA0054838.1 (subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 159 bits (401), Expect = 3.40e-48
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 39  MYSLGVDMSLDETLETWKGRSSEGRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAI 98
           MYSLGVDMSLDETLETWKGRSSEGRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAI
Sbjct: 1   MYSLGVDMSLDETLETWKGRSSEGRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAI 60

Query: 99  ADWPKEKCETEDELCGEVVK 118
           ADWPKEKCETEDELCGEVVK
Sbjct: 61  ADWPKEKCETEDELCGEVVK 80

[Close]

BLAST of IVF0023227 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 125 bits (314), Expect = 4.80e-31
Identity = 73/117 (62.39%), Postives = 85/117 (72.65%), Query Frame = 0


Query: 3   KATRVRLETFANVGSNVPNNFNG-LPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 62
           +ATR R ETFA+VGSNVPN FNG +PLDDSHD  I  MYS GV MS DE      G++SE
Sbjct: 333 RATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASE 392

Query: 63  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 118
            +N SSGSKRKQ  +  +TVEVI++ IE  NDQ KAIA+WPKEK  TE EL  EV+K
Sbjct: 393 RKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMK 449

[Close]

BLAST of IVF0023227 vs. NCBI nr
Match: KAA0056515.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 2.66e-29
Identity = 67/117 (57.26%), Postives = 83/117 (70.94%), Query Frame = 0


Query: 3   KATRVRLETFANVGSNVPNNFN-GLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 62
           +AT+ R ETF+ VGSNVPN FN G+PL DSH+  I  MYS GV MS+DE      G++SE
Sbjct: 195 RATKERSETFSGVGSNVPNMFNDGVPLGDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASE 254

Query: 63  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 118
            RN SSGSKRK+  +  + VEVIR+ ++  N+Q K IADWPK+K  TE ELC EVVK
Sbjct: 255 RRNCSSGSKRKRGSKHYEMVEVIRSVMKFGNNQLKTIADWPKKKRATEVELCAEVVK 311

[Close]

BLAST of IVF0023227 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 111 bits (277), Expect = 9.01e-28
Identity = 69/117 (58.97%), Postives = 80/117 (68.38%), Query Frame = 0


Query: 3   KATRVRLETFANVGSNVPNNFN-GLPLDDSHDLKILRMYSLGVDMSLDETLETWKGRSSE 62
           +AT  R ETFA+VGSN+PN FN G+PL DSH   I  MYS GV MSLDE   T  G++SE
Sbjct: 39  QATEARSETFADVGSNIPNMFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASE 98

Query: 63  GRNASSGSKRKQSGQVSKTVEVIRNTIEPVNDQFKAIADWPKEKCETEDELCGEVVK 118
            RN SS SKRKQ  Q  +TVEVIR+ ++  NDQ KAIADW KEK   + EL   VVK
Sbjct: 99  RRNCSSRSKRKQGSQHYETVEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVK 155

The following BLAST results are available for this feature:

BLAST of IVF0023227 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023227 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DX03	6.3e-58	99.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1142G003...	[more]
A0A5A7UIQ1	4.0e-36	100.00	Subtilisin-like protease SBT3.17 isoform X1 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7SQU2	2.2e-26	62.39	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7USN6	4.6e-24	57.26	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3CVB7	4.3e-22	58.97	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of IVF0023227 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK27770.1	4.15e-75	99.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054838.1	3.40e-48	100.00	subtilisin-like protease SBT3.17 isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0033290.1	4.80e-31	62.39	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]
KAA0056515.1	2.66e-29	57.26	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nucleas...	[more]
KAA0042340.1	9.01e-28	58.97	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]

BLAST of IVF0023227 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 58..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023227.1	IVF0023227.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity