IVF0023226 (gene) Melon (IVF77) v1

Overview
NameIVF0023226
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionCholine-phosphate cytidylyltransferase
Locationchr01: 16987252 .. 16987732 (-)
RNA-Seq ExpressionIVF0023226
SyntenyIVF0023226
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTCACGGCTTCATTCTCTGGTATTGATTTTGATTTGAGAAAAAAAGGAATATATGAAAACACCAGGAAATTTCATAAAATGGTCATTTGAATTTCTGTTTCTTGTGGCCAAACACATTTTTCCTCGATACAGTCAAAGGACCATGGAGATCCATCCTTCAACACCTTGAACTTATAAAGGATAGTCACAATTAACGTGGGAAATGGAAATAACACCTCCTTTTGGAATGATAGTTGGGAGCAACTTCTGGGAAGATGAACATGGATGGAACATTTCTTATAGGAGAAACTTAAAAGAGGAGGAATTTGAAGATTGGTTGACTTTGATGAATCTCCGATCCACTCTCAATCCTACCACTTCTGGAGATAACGGAGATAAAAGGACTTGGCGTCGACAAGAATGGGAACTTCTCCTTCTCTTCACTTTTGGATGCAATTTAGACGTACTTTCACTCAAAAAAGTCAAATTCTTCTAG

mRNA sequence

ATGTTCTTCACGGCTTCATTCTCTGGTATTGATTTTGATTTGAGAAAAAAAGGAATATATGAAAACACCAGGAAATTTCATAAAATGTCACAATTAACGTGGGAAATGGAAATAACACCTCCTTTTGGAATGATAGTTGGGAGCAACTTCTGGGAAGATGAACATGGATGGAACATTTCTTATAGGAGAAACTTAAAAGAGGAGGAATTTGAAGATTGGTTGACTTTGATGAATCTCCGATCCACTCTCAATCCTACCACTTCTGGAGATAACGGAGATAAAAGGACTTGGCGTCGACAAGAATGGGAACTTCTCCTTCTCTTCACTTTTGGATGCAATTTAGACGTACTTTCACTCAAAAAAGTCAAATTCTTCTAG

Coding sequence (CDS)

ATGTTCTTCACGGCTTCATTCTCTGGTATTGATTTTGATTTGAGAAAAAAAGGAATATATGAAAACACCAGGAAATTTCATAAAATGTCACAATTAACGTGGGAAATGGAAATAACACCTCCTTTTGGAATGATAGTTGGGAGCAACTTCTGGGAAGATGAACATGGATGGAACATTTCTTATAGGAGAAACTTAAAAGAGGAGGAATTTGAAGATTGGTTGACTTTGATGAATCTCCGATCCACTCTCAATCCTACCACTTCTGGAGATAACGGAGATAAAAGGACTTGGCGTCGACAAGAATGGGAACTTCTCCTTCTCTTCACTTTTGGATGCAATTTAGACGTACTTTCACTCAAAAAAGTCAAATTCTTCTAG

Protein sequence

MFFTASFSGIDFDLRKKGIYENTRKFHKMSQLTWEMEITPPFGMIVGSNFWEDEHGWNISYRRNLKEEEFEDWLTLMNLRSTLNPTTSGDNGDKRTWRRQEWELLLLFTFGCNLDVLSLKKVKFF
Homology
BLAST of IVF0023226 vs. ExPASy TrEMBL
Match: A0A0A0K3T0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268520 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.7e-19
Identity = 62/118 (52.54%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 1  MFFTASFSGIDFDLRKKGIYENTRKFHKMSQLTWEMEITPPFGMIVG------------- 60
          MFFTASFS                     SQLTWEMEI PPF +IVG             
Sbjct: 1  MFFTASFS--------------------ESQLTWEMEIRPPFVVIVGLVIPPLSSLVQLD 60

Query: 61 --------SNFWEDEHGWNISYRRNLKEEEFEDWLTLMNLRSTLNPTTSGDNGDKRTW 98
                  SN WEDEHGWNISYRRNLKEEEFEDWLTL NL ST+NPT      DK TW
Sbjct: 61 ITNNLATVSNSWEDEHGWNISYRRNLKEEEFEDWLTLTNLLSTVNPTR-----DKWTW 93

BLAST of IVF0023226 vs. ExPASy TrEMBL
Match: A0A5A7T1C2 (Choline-phosphate cytidylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold852G00180 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.1e-12
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 34 WEMEITPPFGMIVGSNFWEDEHGWNISYRRNLKEEEFEDWLTLMNLRSTLNPTTSGDNGD 93
          W  EITPPFGMIVG      + GWNISYRRNL+E EFEDWL LM+L ST+ PTTS    D
Sbjct: 2  WGTEITPPFGMIVGL-----DRGWNISYRRNLQEGEFEDWLALMDLLSTVTPTTS---RD 57

Query: 94 KRTW 98
          K TW
Sbjct: 62 KWTW 57

BLAST of IVF0023226 vs. ExPASy TrEMBL
Match: A0A5A7UVQ5 (Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold9829G00060 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 8.8e-10
Identity = 39/77 (50.65%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 36 MEITPPFGMIVG----------------------SNFWEDEHGWNISYRRNLKEEEFEDW 91
          M+ITPPFGMIVG                      SNFWED +GW    RRNL+EEE ED 
Sbjct: 1  MKITPPFGMIVGLVMPLILFPCLYNLATNKLSIVSNFWEDNYGWRSLIRRNLEEEELEDC 60

BLAST of IVF0023226 vs. NCBI nr
Match: KGN44355.1 (hypothetical protein Csa_016666 [Cucumis sativus])

HSP 1 Score: 103 bits (256), Expect = 1.25e-25
Identity = 62/118 (52.54%), Postives = 64/118 (54.24%), Query Frame = 0

Query: 1  MFFTASFSGIDFDLRKKGIYENTRKFHKMSQLTWEMEITPPFGMIVG------------- 60
          MFFTASFS                     SQLTWEMEI PPF +IVG             
Sbjct: 1  MFFTASFSE--------------------SQLTWEMEIRPPFVVIVGLVIPPLSSLVQLD 60

Query: 61 --------SNFWEDEHGWNISYRRNLKEEEFEDWLTLMNLRSTLNPTTSGDNGDKRTW 97
                  SN WEDEHGWNISYRRNLKEEEFEDWLTL NL ST+NPT      DK TW
Sbjct: 61 ITNNLATVSNSWEDEHGWNISYRRNLKEEEFEDWLTLTNLLSTVNPTR-----DKWTW 93

BLAST of IVF0023226 vs. NCBI nr
Match: KAA0035255.1 (choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa] >TYK07580.1 choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa])

HSP 1 Score: 82.4 bits (202), Expect = 3.75e-17
Identity = 42/64 (65.62%), Postives = 46/64 (71.88%), Query Frame = 0

Query: 34 WEMEITPPFGMIVGSNFWEDEHGWNISYRRNLKEEEFEDWLTLMNLRSTLNPTTSGDNGD 93
          W  EITPPFGMIVG      + GWNISYRRNL+E EFEDWL LM+L ST+ PTTS D   
Sbjct: 2  WGTEITPPFGMIVGL-----DRGWNISYRRNLQEGEFEDWLALMDLLSTVTPTTSRD--- 57

Query: 94 KRTW 97
          K TW
Sbjct: 62 KWTW 57

BLAST of IVF0023226 vs. NCBI nr
Match: KAA0057629.1 (retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa])

HSP 1 Score: 72.4 bits (176), Expect = 1.54e-13
Identity = 39/77 (50.65%), Postives = 44/77 (57.14%), Query Frame = 0

Query: 36 MEITPPFGMIVG----------------------SNFWEDEHGWNISYRRNLKEEEFEDW 90
          M+ITPPFGMIVG                      SNFWED +GW    RRNL+EEE ED 
Sbjct: 1  MKITPPFGMIVGLVMPLILFPCLYNLATNKLSIVSNFWEDNYGWRSLIRRNLEEEELEDC 60

BLAST of IVF0023226 vs. NCBI nr
Match: KAE8649124.1 (hypothetical protein Csa_014630 [Cucumis sativus])

HSP 1 Score: 49.7 bits (117), Expect = 6.26e-04
Identity = 18/32 (56.25%), Postives = 27/32 (84.38%), Query Frame = 0

Query: 48  SNFWEDEHGWN--ISYRRNLKEEEFEDWLTLM 77
           +NFW+++HGW   I+YRRN KE+EFE+W+ L+
Sbjct: 245 NNFWDEQHGWTWTITYRRNFKEDEFEEWMALV 276

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K3T04.7e-1952.54Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268520 PE=4 SV=1[more]
A0A5A7T1C21.1e-1265.63Choline-phosphate cytidylyltransferase OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A5A7UVQ58.8e-1050.65Retrotransposon protein, putative, unclassified OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
KGN44355.11.25e-2552.54hypothetical protein Csa_016666 [Cucumis sativus][more]
KAA0035255.13.75e-1765.63choline-phosphate cytidylyltransferase [Cucumis melo var. makuwa] >TYK07580.1 ch... [more]
KAA0057629.11.54e-1350.65retrotransposon protein, putative, unclassified [Cucumis melo var. makuwa][more]
KAE8649124.16.26e-0456.25hypothetical protein Csa_014630 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023226.1IVF0023226.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity