IVF0023198 (gene) Melon (IVF77) v1

Overview
NameIVF0023198
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Descriptionlate embryogenesis abundant protein D-29-like
Locationchr07: 20474625 .. 20475655 (+)
RNA-Seq ExpressionIVF0023198
SyntenyIVF0023198
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATCCTCCCAACCGCACGTCATATACAATATTCAAATACCTAAATTTGTAAACTCACGATTTCACCACCCAATCTCCACTCCCATTTACCTTTTGAATTTTATATAACTTTTTTGTTTTTGTTGGTGGTGTGGAGGTGATTGGACTGGAGAAAAGAGAATTGTAATAATTGAAACAAGAACGGAAGAATAAAAGAATAAAGAAAGAAATAATGGGGAGGAAAATGATGACGTTAGTGGTGGCGGTGGTATTGCTGGTGTTGGTGGCGGAGAAATGCAGGGGGGATGGTGAAGATGCAGTACAAGACGTGAAGGACAGTATGAGTGAATTTGCGAAGGATGCAAAACTTGATGAAAAGGCCGAAGCTGTCAAATCTACGGCTTCTGAAGTATACAGCGATGCTAAGGACAAGGCTGAGTCCTGGTCCAACTGGGCTTACGACAAGATTTCCAAGTAACACAACTCTGTTTCTTTTCCTTTCCAATGTAATTATATTCTATTTTGGGGATATAGAATCGTAAGTCGGAAGAACAGTGAAAACAGAACTAAATGAATTTATCGTTTTTTAGATTATATTACATTATTTGTTAGATTTGTTCATTTTGAATATAAATGGGTTAAATTGGAAACAGGGGGTTAGGATTGAGCGAAGAAGAATCGAAAGAGAAAGCTCATGACGGAGCGGATAAAGCCTGATGCAGCCGTAAAAACCGCAGAAAAAACGAACATAGCAGCTTGAGGTAAATTTTGAATAAAAAAAGGCAGAACCCTAATGAATTTCATTATTATTTCATCATTATCTCTAAATAAAATTTTTGGAAAAATTATATAATATCTAAAAAAATATTTCTATTTCTTTTGGAAGAAATTGAGTTGGTAATACTCTAATGTTTAACTTGTTATAGTCTGATGTTTGGACATTTTGTGTCGAATTGTTTGGTAACATTGTTTTATTTGATTTTCCATGTTGGACTTTAAGGGGAAAAAATGGAAAATATGCTCCAAAAACTAATCATTAATTTTTTTTTTCTC

mRNA sequence

AATCCTCCCAACCGCACGTCATATACAATATTCAAATACCTAAATTTGTAAACTCACGATTTCACCACCCAATCTCCACTCCCATTTACCTTTTGAATTTTATATAACTTTTTTGTTTTTGTTGGTGGTGTGGAGGTGATTGGACTGGAGAAAAGAGAATTGTAATAATTGAAACAAGAACGGAAGAATAAAAGAATAAAGAAAGAAATAATGGGGAGGAAAATGATGACGTTAGTGGTGGCGGTGGTATTGCTGGTGTTGGTGGCGGAGAAATGCAGGGGGGATGGTGAAGATGCAGTACAAGACGTGAAGGACAGTATGAGTGAATTTGCGAAGGATGCAAAACTTGATGAAAAGGCCGAAGCTGTCAAATCTACGGCTTCTGAAGTATACAGCGATGCTAAGGACAAGGCTGAGTCCTGGTCCAACTGGGCTTACGACAAGATTTCCAAGGGGTTAGGATTGAGCGAAGAAGAATCGAAAGAGAAAGCTCATGACGGAGCGGATAAAGCCTGATGCAGCCGTAAAAACCGCAGAAAAAACGAACATAGCAGCTTGAGGTAAATTTTGAATAAAAAAAGGCAGAACCCTAATGAATTTCATTATTATTTCATCATTATCTCTAAATAAAATTTTTGGAAAAATTATATAATATCTAAAAAAATATTTCTATTTCTTTTGGAAGAAATTGAGTTGGTAATACTCTAATGTTTAACTTGTTATAGTCTGATGTTTGGACATTTTGTGTCGAATTGTTTGGTAACATTGTTTTATTTGATTTTCCATGTTGGACTTTAAGGGGAAAAAATGGAAAATATGCTCCAAAAACTAATCATTAATTTTTTTTTTCTC

Coding sequence (CDS)

ATGGGGAGGAAAATGATGACGTTAGTGGTGGCGGTGGTATTGCTGGTGTTGGTGGCGGAGAAATGCAGGGGGGATGGTGAAGATGCAGTACAAGACGTGAAGGACAGTATGAGTGAATTTGCGAAGGATGCAAAACTTGATGAAAAGGCCGAAGCTGTCAAATCTACGGCTTCTGAAGTATACAGCGATGCTAAGGACAAGGCTGAGTCCTGGTCCAACTGGGCTTACGACAAGATTTCCAAGGGGTTAGGATTGAGCGAAGAAGAATCGAAAGAGAAAGCTCATGACGGAGCGGATAAAGCCTGA

Protein sequence

MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEVYSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA
Homology
[Close]
BLAST of IVF0023198 vs. ExPASy TrEMBL
Match: A0A5D3D1U2 (Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004970 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV
Sbjct: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 102
           YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101

[Close]
BLAST of IVF0023198 vs. ExPASy TrEMBL
Match: A0A1S3BSF4 (late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC103493194 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 4.4e-44
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV
Sbjct: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 102
           YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101

[Close]
BLAST of IVF0023198 vs. ExPASy TrEMBL
Match: A0A5A7TSE6 (Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004980 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.0e-32
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRK  TLVVAVV LVLVAEKC G GE AV+DVKD++SE A+DAKLDEKAEAVKSTASEV
Sbjct: 1   MGRKTATLVVAVVWLVLVAEKCSGYGE-AVRDVKDNVSEIAEDAKLDEKAEAVKSTASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 102
           YSDAKDKAESWSNWAYDKISKGLGLSE+E KE AH+ ADKA
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEKELKETAHNVADKA 100

[Close]
BLAST of IVF0023198 vs. ExPASy TrEMBL
Match: A0A1S3BT31 (late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC103493195 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 3.0e-32
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRK  TLVVAVV LVLVAEKC G GE AV+DVKD++SE A+DAKLDEKAEAVKSTASEV
Sbjct: 1   MGRKTATLVVAVVWLVLVAEKCSGYGE-AVRDVKDNVSEIAEDAKLDEKAEAVKSTASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 102
           YSDAKDKAESWSNWAYDKISKGLGLSE+E KE AH+ ADKA
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEKELKETAHNVADKA 100

[Close]
BLAST of IVF0023198 vs. ExPASy TrEMBL
Match: A0A0A0KUJ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.4e-29
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRK  TLVVAVV LVLVAEKC G GE+AV+DVK++MSE A+ A LDEKAEAVKS ASEV
Sbjct: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 102
           Y++AKDK ESWSNWAY+KIS+GLGL+EEE KE AH+ ADKA
Sbjct: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKA 101

[Close]
BLAST of IVF0023198 vs. NCBI nr
Match: XP_008452082.1 (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044798.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa] >TYK16666.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa])

HSP 1 Score: 184 bits (467), Expect = 2.78e-58
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV
Sbjct: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101
           YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101

[Close]
BLAST of IVF0023198 vs. NCBI nr
Match: XP_008452083.1 (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044797.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa] >TYK16667.1 late embryogenesis abundant protein D-29-like [Cucumis melo var. makuwa])

HSP 1 Score: 145 bits (365), Expect = 2.35e-41
Identity = 85/101 (84.16%), Postives = 91/101 (90.10%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRK  TLVVAVV LVLVAEKC G GE AV+DVKD++SE A+DAKLDEKAEAVKSTASEV
Sbjct: 1   MGRKTATLVVAVVWLVLVAEKCSGYGE-AVRDVKDNVSEIAEDAKLDEKAEAVKSTASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101
           YSDAKDKAESWSNWAYDKISKGLGLSE+E KE AH+ ADKA
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEKELKETAHNVADKA 100

[Close]
BLAST of IVF0023198 vs. NCBI nr
Match: XP_004146555.1 (late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53305.1 hypothetical protein Csa_015110 [Cucumis sativus])

HSP 1 Score: 136 bits (342), Expect = 7.33e-38
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGRK  TLVVAVV LVLVAEKC G GE+AV+DVK++MSE A+ A LDEKAEAVKS ASEV
Sbjct: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101
           Y++AKDK ESWSNWAY+KIS+GLGL+EEE KE AH+ ADKA
Sbjct: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKA 101

[Close]
BLAST of IVF0023198 vs. NCBI nr
Match: XP_004146505.1 (late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53307.1 hypothetical protein Csa_014395 [Cucumis sativus])

HSP 1 Score: 120 bits (301), Expect = 5.95e-33
Identity = 75/103 (72.82%), Postives = 86/103 (83.50%), Query Frame = 0 

Query: 1   MGRKMMTLVVAV--VLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTAS 60
           MGRK MTL+VAV  V LVLVA+KC G  E+AVQD+KD++ + A+DAKLDEKAEAVKS AS
Sbjct: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60

Query: 61  EVYSDAKDKAESWSNWAYDKISKGLGLSEE-ESKEKAHDGADK 100
           EVY+DAKDKA SWSNWAYDKIS GLGLSEE + KE A + ADK
Sbjct: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 102

[Close]
BLAST of IVF0023198 vs. NCBI nr
Match: XP_038906279.1 (late embryogenesis abundant protein D-29 isoform X2 [Benincasa hispida])

HSP 1 Score: 122 bits (306), Expect = 3.05e-32
Identity = 70/101 (69.31%), Postives = 80/101 (79.21%), Query Frame = 0 

Query: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60
           MGR  M  VVAVV L+LVA+KCRG GE+A+QDVKD++SE  KD  LDEKAEAVKS AS+V
Sbjct: 1   MGRTSMLSVVAVVWLLLVADKCRGMGEEALQDVKDNVSEITKDTSLDEKAEAVKSGASDV 60

Query: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101
           + DAK+ AESWSNWAY KISKGLG + EE KE AH   DKA
Sbjct: 61  FHDAKENAESWSNWAYGKISKGLGFNGEELKETAHYVVDKA 101

The following BLAST results are available for this feature:
BLAST of IVF0023198 vs.
Match NameE-valueIdentityDescription
BLAST of IVF0023198 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D1U24.4e-44100.00Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3BSF44.4e-44100.00late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A5A7TSE63.0e-3284.16Late embryogenesis abundant protein D-29-like OS=Cucumis melo var. makuwa OX=119... [more]
A0A1S3BT313.0e-3284.16late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC1034... [more]
A0A0A0KUJ51.4e-2976.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1[more]
BLAST of IVF0023198 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008452082.12.78e-58100.00PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044... [more]
XP_008452083.12.35e-4184.16PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo] >KAA0044... [more]
XP_004146555.17.33e-3876.24late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53305.1 hypotheti... [more]
XP_004146505.15.95e-3372.82late embryogenesis abundant protein D-29 [Cucumis sativus] >KGN53307.1 hypotheti... [more]
XP_038906279.13.05e-3269.31late embryogenesis abundant protein D-29 isoform X2 [Benincasa hispida][more]
BLAST of IVF0023198 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023198.2IVF0023198.2mRNA