IVF0023195 (gene) Melon (IVF77) v1

Overview


Name	IVF0023195
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Unknown protein
Location	chr09: 17692592 .. 17692780 (+)
RNA-Seq Expression	IVF0023195
Synteny	IVF0023195

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATTGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGTAGGGAAAGACGGAGAAGACGAAATAACAGGAGCTAGACGAATCGCGAAGAAAAAAAGAAAGATGGAAGGGCAAACCTGGAATATTTAA

mRNA sequence

ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATTGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGTAGGGAAAGACGGAGAAGACGAAATAACAGGAGCTAGACGAATCGCGAAGAAAAAAAGAAAGATGGAAGGGCAAACCTGGAATATTTAA

Coding sequence (CDS)

ATGGAAAGATTAAACGACATAAATAAAGAATTGAAAAATAAGAAAGATGATGGAAAGAAATTGCAGAAAAGAAAAAGAGAAAAGAAGAAAGACGAAATCGTAGGGAAAGACGGAGAAGACGAAATAACAGGAGCTAGACGAATCGCGAAGAAAAAAAGAAAGATGGAAGGGCAAACCTGGAATATTTAA

Protein sequence

MERLNDINKELKNKKDDGKKLQKRKREKKKDEIVGKDGEDEITGARRIAKKKRKMEGQTWNI

Homology

[Close]

BLAST of IVF0023195 vs. ExPASy TrEMBL
Match: A0A5A7SVQ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00530 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.5e-07
Identity = 30/41 (73.17%), Postives = 37/41 (90.24%), Query Frame = 0


Query: 22 QKRKREKKKDEIVGKDGEDEITGARRIAKKKRKMEGQTWNI 63
          +K+++E KKDEI G+DG+DEITG RRIA+K RKMEGQTWNI
Sbjct: 6  RKKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

[Close]

BLAST of IVF0023195 vs. NCBI nr
Match: KAA0033511.1 (hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 3.71e-09
Identity = 30/40 (75.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 23 KRKREKKKDEIVGKDGEDEITGARRIAKKKRKMEGQTWNI 62
          K+++E KKDEI G+DG+DEITG RRIA+K RKMEGQTWNI
Sbjct: 7  KKEKENKKDEIAGEDGKDEITGGRRIARKNRKMEGQTWNI 46

[Close]

BLAST of IVF0023195 vs. NCBI nr
Match: KAA0057036.1 (hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa])

HSP 1 Score: 45.4 bits (106), Expect = 7.68e-04
Identity = 30/47 (63.83%), Postives = 36/47 (76.60%), Query Frame = 0


Query: 1  MERLNDINKELKNKKDDGKKLQKRKREKKKDEIVGKDGEDEITGARR 47
          MERLNDINKELKNKKD  +  +K K++KKK+EI G   EDEI G R+
Sbjct: 1  MERLNDINKELKNKKDMERNRRKEKQKKKKEEITG---EDEIRGGRK 44

The following BLAST results are available for this feature:

BLAST of IVF0023195 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023195 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SVQ8	3.5e-07	73.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of IVF0023195 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033511.1	3.71e-09	75.00	hypothetical protein E6C27_scaffold261G00530 [Cucumis melo var. makuwa]	[more]
KAA0057036.1	7.68e-04	63.83	hypothetical protein E6C27_scaffold96G002220 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023195 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..62
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023195.1	IVF0023195.1	mRNA