IVF0023170 (gene) Melon (IVF77) v1

Overview


Name	IVF0023170
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	30S ribosomal protein S4, chloroplastic
Location	tig00000662: 106826 .. 107524 (+)
RNA-Seq Expression	IVF0023170
Synteny	IVF0023170

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCCAAAACCGGAAACGATCTTAAAAACCAATCGCGTTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATATTATTACAGCAAAAGATGAAAAAAAATCGAGAACACTGATTCAAAATTATCTTGATTCATCCCCCCCTCAGGAATTGCCAAAACATTTGACTCTTCAGCCATTGCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTCAGTTTAAAAATAAATGAATTGCTCGTTGTAGAATATTATTCTCGTCAGACTTAAACCTAACTAAAAAACAAGGGTTCGGACAATTTCGTCCTCCCCTTCGCCGAAGTCTAAGTAAAGAGACCGAAGGAAAGTAAGGTTTTGATCCGG

mRNA sequence

ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCCAAAACCGGAAACGATCTTAAAAACCAATCGCGTTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATATTATTACAGCAAAAGATGAAAAAAAATCGAGAACACTGATTCAAAATTATCTTGATTCATCCCCCCCTCAGGAATTGCCAAAACATTTGACTCTTCAGCCATTGCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTCAGTTTAAAAATAAATGAATTGCTCGTTGTAGAATATTATTCTCGTCAGACTTAAACCTAACTAAAAAACAAGGGTTCGGACAATTTCGTCCTCCCCTTCGCCGAAGTCTAAGTAAAGAGACCGAAGGAAAGTAAGGTTTTGATCCGG

Coding sequence (CDS)

ATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCCAAAACCGGAAACGATCTTAAAAACCAATCGCGTTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCGATTGGGTATGGCTTCGACTATTCCTCAAGCCCGACAATTAGTTAATCATAGACATATTTTAGTTAATGGTTCTATAGTGGATATACCAAGTTATCGGTGCAAACCCCGAGATATTATTACAGCAAAAGATGAAAAAAAATCGAGAACACTGATTCAAAATTATCTTGATTCATCCCCCCCTCAGGAATTGCCAAAACATTTGACTCTTCAGCCATTGCAATATAAAGGATTAGTCAATCAAATAATAGATAGTAAATGGGTCAGTTTAAAAATAAATGAATTGCTCGTTGTAGAATATTATTCTCGTCAGACTTAA

Protein sequence

MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIIDSKWVSLKINELLVVEYYSRQT

Homology

[Close]

BLAST of IVF0023170 vs. ExPASy Swiss-Prot
Match: Q4VZH3 (30S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 4.1e-107
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYR PRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRRPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy Swiss-Prot
Match: Q49KZ6 (30S ribosomal protein S4, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rps4 PE=3 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 8.4e-100
Identity = 183/201 (91.04%), Postives = 193/201 (96.02%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRP+ G+DL+NQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIITA+D++KSR +IQNY DSSP +E+PKHLTL P QYKGLVNQIID
Sbjct: 121 CIVDIPSYRCKPRDIITARDDQKSRAMIQNYFDSSPHEEVPKHLTLHPFQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKW+ LKINELLVVEYYSRQT
Sbjct: 181 SKWIGLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy Swiss-Prot
Match: A6MM38 (30S ribosomal protein S4, chloroplastic OS=Buxus microphylla OX=153571 GN=rps4 PE=3 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.4e-99
Identity = 186/201 (92.54%), Postives = 192/201 (95.52%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRP+ G+DL+NQSRSGK+SQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPRAGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIITAKDE+KSR LIQNYLDSSP +ELPKHLTL   QYKGLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDIITAKDEQKSRALIQNYLDSSPHEELPKHLTLHSFQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWV LKINELLVVEYYSRQT
Sbjct: 181 SKWVGLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy Swiss-Prot
Match: Q1KXV7 (30S ribosomal protein S4, chloroplastic OS=Helianthus annuus OX=4232 GN=rps4 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 2.1e-98
Identity = 183/201 (91.04%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLT+KRP+ G+DL+NQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTNKRPRAGSDLRNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIP ARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMAPTIPGARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRD I A+DE+KSR LIQN LDSSPP+ELP HLTLQP QYKGLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDTIAARDEQKSRALIQNSLDSSPPEELPNHLTLQPFQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWV LKINELLVVEYYSRQT
Sbjct: 181 SKWVGLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy Swiss-Prot
Match: Q09FV9 (30S ribosomal protein S4, chloroplastic OS=Nandina domestica OX=41776 GN=rps4 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 4.6e-98
Identity = 184/201 (91.54%), Postives = 190/201 (94.53%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRP  G+DL+NQSRSGK+SQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPTPGSDLRNQSRSGKRSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIP ARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPGARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIIT +DE+KSR LIQNYLDSSP +ELPKHLTL   QYKGLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDIITTRDEQKSRALIQNYLDSSPHEELPKHLTLHSSQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWV LKINELLVVEYYSRQT
Sbjct: 181 SKWVGLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy TrEMBL
Match: A0A218KG36 (30S ribosomal protein S4, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=rps4 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy TrEMBL
Match: A0A1X9Q1U9 (30S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy TrEMBL
Match: A0A249RZ87 (30S ribosomal protein S4, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rps4 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy TrEMBL
Match: A0A1S4EU11 (30S ribosomal protein S4, chloroplastic OS=Cucumis melo OX=3656 GN=rps4 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. ExPASy TrEMBL
Match: A0A286NFR5 (30S ribosomal protein S4, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rps4 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.8e-105
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. NCBI nr
Match: YP_004841785.1 (ribosomal protein S4 [Cucumis melo subsp. melo] >YP_009004046.1 ribosomal protein S4 [Cucumis hystrix] >YP_009346486.1 ribosomal protein S4 [Cucumis x hytivus] >YP_009560837.1 ribosomal protein S4 [Trichosanthes kirilowii] >YP_009752414.1 ribosomal protein S4 [Trichosanthes tricuspidata] >YP_009753622.1 ribosomal protein S4 [Trichosanthes wallichiana] >YP_009753707.1 ribosomal protein S4 [Trichosanthes nervifolia] >YP_009860075.1 ribosomal protein S4 [Cucumis melo subsp. agrestis] >AAZ94653.1 ribosomal protein S4 [Cucumis sativus] >ALF03303.1 ribosomal protein S4 [Cucumis sativus var. hardwickii] >ASY96608.1 ribosomal protein S4 [Cucumis melo var. conomon] >ASY96695.1 ribosomal protein S4 [Cucumis melo var. makuwa] >ASY96782.1 ribosomal protein S4 [Cucumis melo var. momordica] >ASY96869.1 ribosomal protein S4 [Cucumis melo var. dudaim] >ASY96956.1 ribosomal protein S4 [Cucumis melo var. cantalupo] >ASY97130.1 ribosomal protein S4 [Cucumis melo var. inodorus] >ASY97304.1 ribosomal protein S4 [Cucumis melo var. flexuosus] >AVE15333.1 ribosomal protein S4 [Cucumis sativus var. sativus] >QJF46385.1 ribosomal protein S4 [Cucumis melo])

HSP 1 Score: 390 bits (1002), Expect = 1.29e-136
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 201
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. NCBI nr
Match: YP_009456148.1 (ribosomal protein S4 [Lagenaria siceraria] >YP_009752498.1 ribosomal protein S4 [Trichosanthes tubiflora] >YP_009753091.1 ribosomal protein S4 [Corallocarpus boehmii] >YP_009753176.1 ribosomal protein S4 [Trichosanthes truncata] >YP_009753260.1 ribosomal protein S4 [Nothoalsomitra suberosa] >YP_009753876.1 ribosomal protein S4 [Trichosanthes lobata] >QNM38533.1 ribosomal protein S4 [Lagenaria siceraria var. microcarpa] >AHM88706.1 ribosomal protein S4 [Lagenaria siceraria] >AHM88765.1 ribosomal protein S4 [Lagenaria siceraria] >AHM88938.1 ribosomal protein S4 [Lagenaria siceraria] >AHM88996.1 ribosomal protein S4 [Lagenaria siceraria])

HSP 1 Score: 388 bits (997), Expect = 7.44e-136
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSR LIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 201
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. NCBI nr
Match: YP_009751487.1 (ribosomal protein S4 [Thladiantha dubia] >QIT03968.1 ribosomal protein S4 [Thladiantha dubia])

HSP 1 Score: 388 bits (996), Expect = 1.06e-135
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDS PPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSFPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 201
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. NCBI nr
Match: YP_247601.1 (ribosomal protein S4 [Cucumis sativus] >Q4VZH3.1 RecName: Full=30S ribosomal protein S4, chloroplastic [Cucumis sativus] >CAJ00760.1 ribosomal protein S4 [Cucumis sativus])

HSP 1 Score: 387 bits (994), Expect = 2.13e-135
Identity = 200/201 (99.50%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYR PRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRRPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 201
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. NCBI nr
Match: YP_010131096.1 (ribosomal protein S4 [Benincasa hispida] >QPZ75743.1 ribosomal protein S4 [Benincasa hispida] >QSQ72312.1 ribosomal protein S4 [Benincasa hispida])

HSP 1 Score: 387 bits (994), Expect = 2.13e-135
Identity = 199/201 (99.00%), Postives = 200/201 (99.50%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG
Sbjct: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
           SIVDIPSYRCKPRDIITAKDEKKSR L+QNYLDSSPPQELPKHLTLQPLQYKGLVNQIID
Sbjct: 121 SIVDIPSYRCKPRDIITAKDEKKSRALMQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 201
           SKWVSLKINELLVVEYYSRQT
Sbjct: 181 SKWVSLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. TAIR 10
Match: ATCG00380.1 (chloroplast ribosomal protein S4 )

HSP 1 Score: 343.2 bits (879), Expect = 1.4e-94
Identity = 178/201 (88.56%), Postives = 184/201 (91.54%), Query Frame = 0


Query: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKTGNDLKNQSRSGKKSQYRIRLEEKQKLRFHYGL 60
           MSRYRGPRFKKIRRLGALPGLTSKRPK G+DL+NQSRS KKSQYRIRLEEKQKLRFHYGL
Sbjct: 1   MSRYRGPRFKKIRRLGALPGLTSKRPKAGSDLRNQSRSVKKSQYRIRLEEKQKLRFHYGL 60

Query: 61  TERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMASTIPQARQLVNHRHILVNG 120
           TE QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMA TIPQARQLVNH HILVNG
Sbjct: 61  TEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNG 120

Query: 121 SIVDIPSYRCKPRDIITAKDEKKSRTLIQNYLDSSPPQELPKHLTLQPLQYKGLVNQIID 180
            IVDIPSYRCKPRDIIT KDE+ SRTL+QN LDSS P+ELP HLTL   QY+GLVNQIID
Sbjct: 121 RIVDIPSYRCKPRDIITVKDEQNSRTLVQNLLDSSAPEELPNHLTLHTFQYEGLVNQIID 180

Query: 181 SKWVSLKINELLVVEYYSRQT 202
            K V LKINELLVVEYYSRQT
Sbjct: 181 RKCVGLKINELLVVEYYSRQT 201

[Close]

BLAST of IVF0023170 vs. TAIR 10
Match: AT2G07734.1 (Alpha-L RNA-binding motif/Ribosomal protein S4 family protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 88  EMRLDNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKD 141
           E R D I  RL    TIPQARQ ++HR + VN  +V I  ++    DII+ ++
Sbjct: 104 ETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQE 156

[Close]

BLAST of IVF0023170 vs. TAIR 10
Match: ATMG00290.1 (mitochondrial ribosomal protein S4 )

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 22/53 (41.51%), Postives = 31/53 (58.49%), Query Frame = 0


Query: 88  EMRLDNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSYRCKPRDIITAKD 141
           E R D I  RL    TIPQARQ ++HR + VN  +V I  ++    DII+ ++
Sbjct: 104 ETRFDVIPLRLHFLETIPQARQPISHRRVCVNKGMVSITHFKLSHGDIISFQE 156

[Close]

BLAST of IVF0023170 vs. TAIR 10
Match: AT5G39850.1 (Ribosomal protein S4 )

HSP 1 Score: 42.0 bits (97), Expect = 6.7e-04
Identity = 30/97 (30.93%), Postives = 46/97 (47.42%), Query Frame = 0


Query: 36  SRSGKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRIAGKAKGSTGQVLL----QLLEMRL 95
           SR    ++  + L+EK   R   G    + +    +  + +     VL       LE RL
Sbjct: 52  SRIRNAARELLTLDEKNPRRIFEGEALLRRMNRYGLLDETQNKLDYVLALTVENFLERRL 111

Query: 96  DNILFRLGMASTIPQARQLVNHRHILVNGSIVDIPSY 129
             I+F+ GMA +I  AR L+  RHI V   +V+IPS+
Sbjct: 112 QTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNIPSF 148

The following BLAST results are available for this feature:

BLAST of IVF0023170 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZH3	4.1e-107	99.50	30S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 ...	[more]
Q49KZ6	8.4e-100	91.04	30S ribosomal protein S4, chloroplastic OS=Eucalyptus globulus subsp. globulus O...	[more]
A6MM38	1.4e-99	92.54	30S ribosomal protein S4, chloroplastic OS=Buxus microphylla OX=153571 GN=rps4 P...	[more]
Q1KXV7	2.1e-98	91.04	30S ribosomal protein S4, chloroplastic OS=Helianthus annuus OX=4232 GN=rps4 PE=...	[more]
Q09FV9	4.6e-98	91.54	30S ribosomal protein S4, chloroplastic OS=Nandina domestica OX=41776 GN=rps4 PE...	[more]

BLAST of IVF0023170 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A218KG36	1.8e-105	100.00	30S ribosomal protein S4, chloroplastic OS=Cucumis sativus var. hardwickii OX=31...	[more]
A0A1X9Q1U9	1.8e-105	100.00	30S ribosomal protein S4, chloroplastic OS=Cucumis sativus OX=3659 GN=rps4 PE=3 ...	[more]
A0A249RZ87	1.8e-105	100.00	30S ribosomal protein S4, chloroplastic OS=Cucumis melo var. cantalupensis OX=36...	[more]
A0A1S4EU11	1.8e-105	100.00	30S ribosomal protein S4, chloroplastic OS=Cucumis melo OX=3656 GN=rps4 PE=3 SV=...	[more]
A0A286NFR5	1.8e-105	100.00	30S ribosomal protein S4, chloroplastic OS=Cucumis melo var. flexuosus OX=112079...	[more]

BLAST of IVF0023170 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_004841785.1	1.29e-136	100.00	ribosomal protein S4 [Cucumis melo subsp. melo] >YP_009004046.1 ribosomal protei...	[more]
YP_009456148.1	7.44e-136	99.50	ribosomal protein S4 [Lagenaria siceraria] >YP_009752498.1 ribosomal protein S4 ...	[more]
YP_009751487.1	1.06e-135	99.50	ribosomal protein S4 [Thladiantha dubia] >QIT03968.1 ribosomal protein S4 [Thlad...	[more]
YP_247601.1	2.13e-135	99.50	ribosomal protein S4 [Cucumis sativus] >Q4VZH3.1 RecName: Full=30S ribosomal pro...	[more]
YP_010131096.1	2.13e-135	99.00	ribosomal protein S4 [Benincasa hispida] >QPZ75743.1 ribosomal protein S4 [Benin...	[more]

BLAST of IVF0023170 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00380.1	1.4e-94	88.56	chloroplast ribosomal protein S4	[more]
AT2G07734.1	1.8e-04	41.51	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	1.8e-04	41.51	mitochondrial ribosomal protein S4	[more]
AT5G39850.1	6.7e-04	30.93	Ribosomal protein S4	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 89..152 e-value: 1.6E-19 score: 80.9
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 89..136 e-value: 4.9E-20 score: 71.0
IPR002942	RNA-binding S4 domain	CDD	cd00165	S4	coord: 89..148 e-value: 5.71218E-19 score: 75.3637
IPR001912	Ribosomal protein S4/S9, N-terminal	SMART	SM01390	Ribosomal_S4_2	coord: 3..88 e-value: 1.1E-23 score: 94.7
IPR001912	Ribosomal protein S4/S9, N-terminal	PFAM	PF00163	Ribosomal_S4	coord: 3..88 e-value: 7.8E-21 score: 74.8
None	No IPR available	GENE3D	1.10.1050.10	Ribosomal Protein S4 Delta 41; Chain A, domain 1	coord: 3..199 e-value: 1.5E-95 score: 320.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..43
None	No IPR available	PANTHER	PTHR11831:SF35	30S RIBOSOMAL PROTEIN S4, CHLOROPLASTIC	coord: 1..200
None	No IPR available	PROSITE	PS50889	S4	coord: 89..150 score: 15.007857
None	No IPR available	SUPERFAMILY	55174	Alpha-L RNA-binding motif	coord: 3..199
IPR036986	RNA-binding S4 domain superfamily	GENE3D	3.10.290.10		coord: 88..184 e-value: 1.5E-95 score: 320.5
IPR005709	Ribosomal protein S4, bacterial-type	TIGRFAM	TIGR01017	TIGR01017	coord: 3..199 e-value: 6.4E-65 score: 216.6
IPR005709	Ribosomal protein S4, bacterial-type	HAMAP	MF_01306_B	Ribosomal_S4_B	coord: 1..199 score: 30.448046
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 1..200
IPR018079	Ribosomal protein S4, conserved site	PROSITE	PS00632	RIBOSOMAL_S4	coord: 87..111

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023170.1	IVF0023170.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding