IVF0023150 (gene) Melon (IVF77) v1

Overview
NameIVF0023150
Typegene
OrganismCucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
DescriptionVPS13 domain-containing protein
Locationchr02: 9389534 .. 9389710 (-)
RNA-Seq ExpressionIVF0023150
SyntenyIVF0023150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTAACTTCTTATACTGCAGGTATGGAAGATTTCGCCCTTGGTGCTCCCCCCTTTCGAGGAAAGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCGCAACAATCTGTCTTGTTAGATGTACGAAAAAAATTAAAGAAATGTTCATGGAAATATCTTGGACAGAGACTGTAA

mRNA sequence

ATGCCTAACTTCTTATACTGCAGGTATGGAAGATTTCGCCCTTGGTGCTCCCCCCTTTCGAGGAAAGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCGCAACAATCTGTCTTGTTAGATGTACGAAAAAAATTAAAGAAATGTTCATGGAAATATCTTGGACAGAGACTGTAA

Coding sequence (CDS)

ATGCCTAACTTCTTATACTGCAGGTATGGAAGATTTCGCCCTTGGTGCTCCCCCCTTTCGAGGAAAGTGAAGGGTTGGCAAATGTTATGGTGGCATTATGCGCAACAATCTGTCTTGTTAGATGTACGAAAAAAATTAAAGAAATGTTCATGGAAATATCTTGGACAGAGACTGTAA

Protein sequence

MPNFLYCRYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Homology
BLAST of IVF0023150 vs. ExPASy Swiss-Prot
Match: Q55EI3 (Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoideum OX=44689 GN=vps13E PE=3 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 5.5e-04
Identity = 19/45 (42.22%), Postives = 28/45 (62.22%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWK 53
           RY +FRP C     +VKG   +WWH+A +S++ D R K  + +WK
Sbjct: 469 RYHKFRPHC-----RVKGNARIWWHFAFRSIISDFRSKKTEMTWK 508

BLAST of IVF0023150 vs. ExPASy TrEMBL
Match: A0A0A0LXR7 (VPS13 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G653310 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.3e-27
Identity = 54/57 (94.74%), Postives = 56/57 (98.25%), Query Frame = 0

Query: 2  PNFLYCRYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 59
          PNFLYCRYGRFRPWC PLSRKVKGWQMLWWHYAQQSVLLDVRK+LKKCSW+YLGQRL
Sbjct: 8  PNFLYCRYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 64

BLAST of IVF0023150 vs. ExPASy TrEMBL
Match: A0A5A7T5L4 (Putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00620 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 59
           +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Sbjct: 300 KYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 350

BLAST of IVF0023150 vs. ExPASy TrEMBL
Match: A0A1S3B8J3 (putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487212 PE=3 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 59
           +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Sbjct: 298 KYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 348

BLAST of IVF0023150 vs. ExPASy TrEMBL
Match: A0A1S4DUY4 (uncharacterized protein LOC103487212 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487212 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 2.5e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 59
           +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Sbjct: 117 KYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 167

BLAST of IVF0023150 vs. ExPASy TrEMBL
Match: A0A6J1JMV4 (uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111485823 PE=3 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 8.0e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 59
           +YGRFRPWC PLSRKVKGWQ+LWWHYAQQSVLLDVRKKLKKCSW+YLGQRL
Sbjct: 300 KYGRFRPWCYPLSRKVKGWQILWWHYAQQSVLLDVRKKLKKCSWRYLGQRL 350

BLAST of IVF0023150 vs. NCBI nr
Match: KAA0038223.1 (putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (294), Expect = 3.28e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 58
           +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Sbjct: 300 KYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 350

BLAST of IVF0023150 vs. NCBI nr
Match: XP_016899794.1 (PREDICTED: uncharacterized protein LOC103487212 isoform X2 [Cucumis melo])

HSP 1 Score: 117 bits (294), Expect = 6.36e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 58
           +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Sbjct: 117 KYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 167

BLAST of IVF0023150 vs. NCBI nr
Match: XP_008443663.1 (PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis melo])

HSP 1 Score: 117 bits (294), Expect = 6.36e-29
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 58
           +YGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL
Sbjct: 298 KYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 348

BLAST of IVF0023150 vs. NCBI nr
Match: XP_031736165.1 (uncharacterized protein LOC101204937 isoform X4 [Cucumis sativus])

HSP 1 Score: 114 bits (285), Expect = 1.05e-27
Identity = 48/51 (94.12%), Postives = 50/51 (98.04%), Query Frame = 0

Query: 8  RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 58
          RYGRFRPWC PLSRKVKGWQMLWWHYAQQSVLLDVRK+LKKCSW+YLGQRL
Sbjct: 3  RYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 53

BLAST of IVF0023150 vs. NCBI nr
Match: XP_031736164.1 (uncharacterized protein LOC101204937 isoform X3 [Cucumis sativus])

HSP 1 Score: 113 bits (282), Expect = 2.66e-27
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 58
           +YGRFRPWC PLSRKVKGWQMLWWHYAQQSVLLDVRK+LKKCSW+YLGQRL
Sbjct: 298 KYGRFRPWCFPLSRKVKGWQMLWWHYAQQSVLLDVRKRLKKCSWRYLGQRL 348

BLAST of IVF0023150 vs. TAIR 10
Match: AT5G24740.2 (Protein of unknown function (DUF1162) )

HSP 1 Score: 79.3 bits (194), Expect = 1.1e-15
Identity = 35/51 (68.63%), Postives = 40/51 (78.43%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLDVRKKLKKCSWKYLGQRL 59
           RYGR+RP  + LSRK  GWQ LWWHYAQ SVL DVRKKL K SW++L QR+
Sbjct: 308 RYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSDVRKKLWKTSWRFLEQRM 358

BLAST of IVF0023150 vs. TAIR 10
Match: AT5G24740.1 (Protein of unknown function (DUF1162) )

HSP 1 Score: 57.4 bits (137), Expect = 4.5e-09
Identity = 24/34 (70.59%), Postives = 26/34 (76.47%), Query Frame = 0

Query: 8   RYGRFRPWCSPLSRKVKGWQMLWWHYAQQSVLLD 42
           RYGR+RP  + LSRK  GWQ LWWHYAQ SVL D
Sbjct: 308 RYGRYRPCSTSLSRKPPGWQKLWWHYAQNSVLSD 341

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q55EI35.5e-0442.22Putative vacuolar protein sorting-associated protein 13E OS=Dictyostelium discoi... [more]
Match NameE-valueIdentityDescription
A0A0A0LXR76.3e-2794.74VPS13 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G653310 PE=4 ... [more]
A0A5A7T5L42.5e-2398.04Putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis m... [more]
A0A1S3B8J32.5e-2398.04putative vacuolar protein sorting-associated protein 13A isoform X1 OS=Cucumis m... [more]
A0A1S4DUY42.5e-2398.04uncharacterized protein LOC103487212 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A6J1JMV48.0e-2292.16uncharacterized protein LOC111485823 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
KAA0038223.13.28e-2998.04putative vacuolar protein sorting-associated protein 13A isoform X1 [Cucumis mel... [more]
XP_016899794.16.36e-2998.04PREDICTED: uncharacterized protein LOC103487212 isoform X2 [Cucumis melo][more]
XP_008443663.16.36e-2998.04PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X1 [... [more]
XP_031736165.11.05e-2794.12uncharacterized protein LOC101204937 isoform X4 [Cucumis sativus][more]
XP_031736164.12.66e-2792.16uncharacterized protein LOC101204937 isoform X3 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
AT5G24740.21.1e-1568.63Protein of unknown function (DUF1162) [more]
AT5G24740.14.5e-0970.59Protein of unknown function (DUF1162) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (IVF77) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031646Vacuolar protein sorting-associated protein 13, second N-terminal domainPFAMPF16908VPS13coord: 8..57
e-value: 9.9E-8
score: 32.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
IVF0023150.1IVF0023150.1mRNA