IVF0023126 (gene) Melon (IVF77) v1

Overview


Name	IVF0023126
Type	gene
Organism	Cucumis melo L. ssp. agrestis cv. IVF77 (Melon (IVF77) v1)
Description	Protein PSY3
Location	chr12: 843200 .. 843508 (+)
RNA-Seq Expression	IVF0023126
Synteny	IVF0023126

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGGTACGGAAAATATGCTAATTTATAACCTATTATTGAGTAGTTTAGATTTACATAATGTATAGAAACTAAAATCTAATATCATATCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAA

mRNA sequence

ATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAA

Coding sequence (CDS)

ATGGATTATTCCAAAACTCGTCTCGCCCTCCTCCTCTTGCTCTCGTTTGCCATCGTTACTTTTGCTCGGATCATACCCCATTCAGAAAACCAAGAGGTAGCATATACAATAAATGACTATCCTGATCCAGGAGCTAATCCAAGACATGATCCATTTCCACCTCCGCCACAACAATTCGAGGTCAGCGTTGTCAAAGTCCAACACATCAGGAAAAACCCCTAA

Protein sequence

MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFEVSVVKVQHIRKNP

Homology

[Close]

BLAST of IVF0023126 vs. ExPASy TrEMBL
Match: A0A5D3BBU7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G00970 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 3.3e-33
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60

Query: 61 VSVVKVQHIRKNP 74
          VSVVKVQHIRKNP
Sbjct: 61 VSVVKVQHIRKNP 73

[Close]

BLAST of IVF0023126 vs. ExPASy TrEMBL
Match: A0A5A7SPC6 (Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.3e-25
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK RLAL LLLSF +VT ARIIPHSENQE AY INDYPDPGANPRHDPFPPP QQFE
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFE 60

Query: 61 VSVVKVQHIRKN 73
          VSVVK   I+KN
Sbjct: 61 VSVVKGHRIKKN 72

[Close]

BLAST of IVF0023126 vs. ExPASy TrEMBL
Match: A0A5A7SMH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00880 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.3e-24
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MDYSKTRL-ALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQF 60
          M+Y K RL AL LLLSFA+VT ARI+PHSENQE AY INDYPDPGANPRHDPFPPPPQQF
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQF 60

Query: 61 EVSVVKVQHIRKNP 74
          E+SVVK   I+KNP
Sbjct: 61 EISVVKDHDIKKNP 74

[Close]

BLAST of IVF0023126 vs. ExPASy TrEMBL
Match: A0A0A0LV67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.8e-23
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQ-F 60
          MDYSK RL+LLLLLSF +VT ARIIPHSENQEVAY INDYPDPGANPRH+PFPPPP+  F
Sbjct: 1  MDYSKARLSLLLLLSFVLVTSARIIPHSENQEVAYMINDYPDPGANPRHNPFPPPPRHLF 60

Query: 61 EVSVVKVQHIRKNP 74
          E+SVVK   I KNP
Sbjct: 61 EISVVKDGDITKNP 74

[Close]

BLAST of IVF0023126 vs. ExPASy TrEMBL
Match: A0A0A0M0T8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.0e-21
Identity = 54/74 (72.97%), Postives = 59/74 (79.73%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPP-PQQF 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP    F
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVSVVKVQHIRKNP 74
          EV+ V+ +HI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of IVF0023126 vs. NCBI nr
Match: KAA0031837.1 (hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ97300.1 hypothetical protein E5676_scaffold194G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 149 bits (377), Expect = 2.02e-45
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE
Sbjct: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60

Query: 61 VSVVKVQHIRKNP 73
          VSVVKVQHIRKNP
Sbjct: 61 VSVVKVQHIRKNP 73

[Close]

BLAST of IVF0023126 vs. NCBI nr
Match: KAA0031836.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 122 bits (307), Expect = 9.75e-35
Identity = 60/72 (83.33%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK RLAL LLLSF +VT ARIIPHSENQE AY INDYPDPGANPRHDPFPPP QQFE
Sbjct: 1  MDYSKARLALFLLLSFVLVTSARIIPHSENQEAAYMINDYPDPGANPRHDPFPPPSQQFE 60

Query: 61 VSVVKVQHIRKN 72
          VSVVK   I+KN
Sbjct: 61 VSVVKGHRIKKN 72

[Close]

BLAST of IVF0023126 vs. NCBI nr
Match: KAA0031838.1 (hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (297), Expect = 3.36e-33
Identity = 59/74 (79.73%), Postives = 64/74 (86.49%), Query Frame = 0


Query: 1  MDYSKTRL-ALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQF 60
          M+Y K RL AL LLLSFA+VT ARI+PHSENQE AY INDYPDPGANPRHDPFPPPPQQF
Sbjct: 1  MNYFKARLIALFLLLSFALVTSARIMPHSENQEAAYMINDYPDPGANPRHDPFPPPPQQF 60

Query: 61 EVSVVKVQHIRKNP 73
          E+SVVK   I+KNP
Sbjct: 61 EISVVKDHDIKKNP 74

[Close]

BLAST of IVF0023126 vs. NCBI nr
Match: KGN65816.1 (hypothetical protein Csa_023196 [Cucumis sativus])

HSP 1 Score: 109 bits (272), Expect = 2.19e-29
Identity = 54/74 (72.97%), Postives = 60/74 (81.08%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQ-F 60
          MDYSK RLAL LLLSFA+ T ARIIPHSENQE  Y +NDY DPGANPRHDPFPPP +  F
Sbjct: 1  MDYSKARLALFLLLSFALATSARIIPHSENQEATYIMNDYSDPGANPRHDPFPPPLEHSF 60

Query: 61 EVSVVKVQHIRKNP 73
          EV+ V+ +HI KNP
Sbjct: 61 EVNAVRGRHITKNP 74

[Close]

BLAST of IVF0023126 vs. NCBI nr
Match: TYJ97296.1 (Protein PSY3 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.73e-25
Identity = 51/73 (69.86%), Postives = 57/73 (78.08%), Query Frame = 0


Query: 1  MDYSKTRLALLLLLSFAIVTFARIIPHSENQEVAYTINDYPDPGANPRHDPFPPPPQQFE 60
          MDYSK RLAL LLLSF +V  ARIIP+SEN E AY INDYPDPGANPRH P PPP +Q +
Sbjct: 1  MDYSKARLALFLLLSFVLVASARIIPYSENHEAAYMINDYPDPGANPRHRP-PPPSRQSK 60

Query: 61 VSVVKVQHIRKNP 73
          VS+ K  HI K+P
Sbjct: 61 VSIDKGSHIGKSP 72

The following BLAST results are available for this feature:

BLAST of IVF0023126 vs.


Match Name	E-value	Identity	Description

BLAST of IVF0023126 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BBU7	3.3e-33	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SPC6	4.3e-25	83.33	Protein PSY3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00860 P...	[more]
A0A5A7SMH7	6.3e-24	79.73	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LV67	1.8e-23	79.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532230 PE=4 SV=1	[more]
A0A0A0M0T8	5.0e-21	72.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G532240 PE=4 SV=1	[more]

BLAST of IVF0023126 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0031837.1	2.02e-45	100.00	hypothetical protein E6C27_scaffold848G00870 [Cucumis melo var. makuwa] >TYJ9730...	[more]
KAA0031836.1	9.75e-35	83.33	Protein PSY3 [Cucumis melo var. makuwa]	[more]
KAA0031838.1	3.36e-33	79.73	hypothetical protein E6C27_scaffold848G00880 [Cucumis melo var. makuwa]	[more]
KGN65816.1	2.19e-29	72.97	hypothetical protein Csa_023196 [Cucumis sativus]	[more]
TYJ97296.1	2.73e-25	69.86	Protein PSY3 [Cucumis melo var. makuwa]	[more]

BLAST of IVF0023126 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
IVF0023126.1	IVF0023126.1	mRNA